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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0390100 |
| Transcript ID | LotjaGi2g1v0390100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GATA transcription factor, putative; TAIR: AT3G50870.1 GATA type zinc finger transcription factor family protein; Swiss-Prot: sp|Q8LC79|GAT18_ARATH GATA transcription factor 18; TrEMBL-Plants: tr|A0A1J7FXI9|A0A1J7FXI9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0390100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88593486..88595390) extracted from Lotus japonicus Gifu genome v1.2.
CCAAAACAAAACCACATCTCTCTCTTTCTTTTTCTTTCTTGTTCCAGCAGCTACTGCTATAAATTGAAACTACGCAAGGG GAAATCTTACATGAAGTCACAAACAGTGCCTCAGATAGAAAAACTCATACACTTTGCTTATTATACCCTCACTCCCTCCC TGACTCACTCACTGCACCACTTCAGAATAATGCACCCATTGGGTCCCTCTCTTTATTTATAATCAACTCTCCATTTGCAA TTCACGACAACGAGGAGTCTGCACCTGCTGACTAGTATTTCGCCATTTTATTAGCCTCACGACAACAACACTCACCCCCT CTTCCCCCACTCCGTACCATTCACCCTCTTTCTTCCAACTTCCAAGTCCTCCGTTTTATTATTGCTTGCACTTCTCTGTT TCTCTGTTCTCTGTTCTGTTCTCTCTCACCTTTGCCTATTAATTCTCCTCTATCCTCATCACACTTTCACATTTCATTTG CTCTCTCTTCAATCGGAAGAAACCGTTTTCTAAACACTGGAATAACAAGAAGCCAACGATGCATCGTGCTTGCAGTGAAC ACGTGATGGGACACTGCACATGTGGGATGTTTCATGGCCAAACAAACTCCTTCTCAATGCTCTTCTCCATGCCCAACCAC CAACCCTATGATGAATATTCCGACATGTATTCCTACACCCCTTCTTCCTCCTCCGTGGACTGCACGCTCTCCCTAGGTAC TCCATCCACCCGTGTAACCACCGAAGACCATGAAGAGAAGCGAAACCACCGCCACGAACGCCGCTCTGTCTCTAACTTTT GCTGGGATTTACTCCAACCCAAACACAGCTCTCAATCCCAAACCAAGTCCACAAGAGGAGGCACCACCACTAATACAAAC TCAAACAATGATTCTCTCCTCGCTCGCCGCTGCGCCAACTGCGACACCACCTCAACACCACTCTGGAGGAATGGCCCTCG AGGACCAAAGGTATATGTTATAAACATATCTACACACAAACTATCGAAGTCTTTTATTTAGTTCATGTGATTAAGAATTT TCAATAGTTCATCTAAGTATGGTTTTCTCTAGAAATCTTAGTTTACAAATTAATTTTAGTACATAGTACTATGTAATAGT TTGAATGAGCCAGTTTTAACATCATCTACCATGCTCTTTCAAATATTTTCATTTATTTTAATAGCTTCTGTATGAATTAA TTGCAGTCGCTGTGCAATGCCTGTGGGATAAGATTCAAGAAGGAAGAGAGAAGAGCAAGTGCTGCCGCCGCCACACCGGC GACAGCCACTGGCGGTGTAATGGAGTCGTCTCAAATGTACAACCACAACAACAGCTCATGGTACGGAAACTCACAGAGCC AGAAGATGCAGTGCTTCTCACCGGCGATGGGAAACGAGCTCCGGTTCATGGATGAGTCCGATAGGGACTCCGAGAATGGC ATTCCCTTCCTCTCTTGGAGACTCAACGTGACGGACAGAACAAGCCTCGTTCATGACTTCACCAGATGAAAAAAATAATC ATATAATAATAATGATAACAGAAGATTACAAAAGGAGCTTCTCTTACCTAGACGGTCAAGACCAGGCAGTTATACGTCAA CGTTTAATGATGGTGATGTAGAAGATGTTTTTGATTGCGATGGTTGTGGTCTCGTCAACATGATGTTTTCTTTTCTTTTT TAGTTAATTAACCTTTTTTTTCTTTGCTTTCCTTTTCTCCCTCTCCTTGTCTTGCTGTTGCATAAGATGGAGTGAGAAAT GGATAATTCTTATTTCTTAGCTTGCTTTTTTCTTTGGACTTCTTTAACTATCTCTTGCACTCATATATGATCCTACTTTT TTTGTTGCTTCACTTTCCCATCTTTTGTAGATTAGTGGTTATATGTAGTTGAAGTTGACCGTGAT
CDS sequence (LotjaGi2g1v0390100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATCGTGCTTGCAGTGAACACGTGATGGGACACTGCACATGTGGGATGTTTCATGGCCAAACAAACTCCTTCTCAAT GCTCTTCTCCATGCCCAACCACCAACCCTATGATGAATATTCCGACATGTATTCCTACACCCCTTCTTCCTCCTCCGTGG ACTGCACGCTCTCCCTAGGTACTCCATCCACCCGTGTAACCACCGAAGACCATGAAGAGAAGCGAAACCACCGCCACGAA CGCCGCTCTGTCTCTAACTTTTGCTGGGATTTACTCCAACCCAAACACAGCTCTCAATCCCAAACCAAGTCCACAAGAGG AGGCACCACCACTAATACAAACTCAAACAATGATTCTCTCCTCGCTCGCCGCTGCGCCAACTGCGACACCACCTCAACAC CACTCTGGAGGAATGGCCCTCGAGGACCAAAGTCGCTGTGCAATGCCTGTGGGATAAGATTCAAGAAGGAAGAGAGAAGA GCAAGTGCTGCCGCCGCCACACCGGCGACAGCCACTGGCGGTGTAATGGAGTCGTCTCAAATGTACAACCACAACAACAG CTCATGGTACGGAAACTCACAGAGCCAGAAGATGCAGTGCTTCTCACCGGCGATGGGAAACGAGCTCCGGTTCATGGATG AGTCCGATAGGGACTCCGAGAATGGCATTCCCTTCCTCTCTTGGAGACTCAACGTGACGGACAGAACAAGCCTCGTTCAT GACTTCACCAGATGA
Protein sequence (LotjaGi2g1v0390100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHRACSEHVMGHCTCGMFHGQTNSFSMLFSMPNHQPYDEYSDMYSYTPSSSSVDCTLSLGTPSTRVTTEDHEEKRNHRHE RRSVSNFCWDLLQPKHSSQSQTKSTRGGTTTNTNSNNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERR ASAAAATPATATGGVMESSQMYNHNNSSWYGNSQSQKMQCFSPAMGNELRFMDESDRDSENGIPFLSWRLNVTDRTSLVH DFTR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 244 | 234 | 1.0E-90 | – | |
| PANTHER | 11 | 244 | 234 | 1.0E-90 | – | |
| MobiDBLite | 60 | 79 | 20 | - | – | |
| MobiDBLite | 95 | 118 | 24 | - | – | |
| ProSiteProfiles | 119 | 155 | 37 | 13.943 | ||
| SMART | 119 | 173 | 55 | 1.3E-18 | ||
| Gene3D | 120 | 165 | 46 | 1.9E-14 | ||
| SUPERFAMILY | 122 | 163 | 42 | 9.03E-14 | – | |
| CDD | 124 | 156 | 33 | 3.94315E-13 | ||
| ProSitePatterns | 125 | 150 | 26 | - | ||
| Pfam | 125 | 159 | 35 | 5.8E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi2g1v0390100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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