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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0396200 |
| Transcript ID | LotjaGi2g1v0396200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF4228 domain protein; TAIR: AT3G50800.1 hypothetical protein; Swiss-Prot: sp|P14242|PMS1_YEAST DNA mismatch repair protein PMS1; TrEMBL-Plants: tr|A0A0L9UR78|A0A0L9UR78_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0396200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89372717..89376816) extracted from Lotus japonicus Gifu genome v1.2.
TGACATCCAATATTTTTTTATTCTGTAGCAAAGTCGCTATTAACTAGATTTCATGGGTGCACGCGCGTAGATGTCAAAGT CAATAATTGTATAACGTTATGTGACACATTGACATTAGCTAGCAAGCATGATCCTGATCTCTCATGGTGGAAGGAAGAAA CCAGATCTAAACAAAAAGCCAAAAATACAAAAAGAAAAAAGTGATCAAGAAATGCAAGATAAGTAGTGTACTACTAGTAG TAGTGGAGTGGAAGAAACCAAACCAAACCATCCAAACTCTAAAAGCAATGGGCGTGTGCGCATCAAAGACCAATGAAAAA CCAAGAGCAAGTGGAAAGGGTGGTCGTGGTGGCGGTGGTGCGGCGGAATCTTTCCGGCGGCCGTCGTCAGTCATGGTGAT GAACTTGGCCGGCGGTGGAATCAAGGAGTACAAGCAACCGGTCCCAGCTAGAGTTGTTGTGTCGGAGAATCCTGATTACT ACCTATGTAACTCAGAGTCAATGTGCGTCGGCACGTGCATGCCACGCGTTCCTGATGAGGAGGTGCTTCTACCTGGCCGA ATTTACTTTCTAGTCCCTCTCTCTCATTCTCATCACCAGTTGTCTCTCCCTCTCCTCTGTGATCTCGCTGTTAAAGCTAG TTCAGTGCTGGATAATGCAAATCCTTCTACTTCCACCACCACCAGCACAAGCTGTAAGCAAGGAACAGAGCCTATGTTCA TCTTCAACGCCCTTAACTTTGACCCTTCATTCTGTTTTCATCGACCCTGACATGACCGTGTAATTATTCATGTAAGTCAA TTGATTACATTGATCAATTTTTGTTATTTATCTTTCATTTTATTTTTAATGGTGTTTCATATATGATGATTTAACTAATT TGTCTAAGTAAGACCTTGGAATGAATCATTCATTCATTTTTGTGTAAGTTCAATTGGTTCTAAAACTGTGAATTGGTCAA TTGGTTTACACTAAGATATAGAAAGTGAGTAAGTGTTCTAGAACTGTGAATTGGTATATTGATTTACACTAAGTGCATCT TTGGAATTGAAATTCGTTTGAAACTATCATGAGAAAGGATAGAAGTAATTGTTCCAAGACACATGAGAAAGTAAAAGAAA GGATTTTAGTAATTAATAAAAGGGTTAAGGATCATATTAGTCCCTGTGTTTGTAAAAACGTTTGATTTTAGTCCCTCAGT CAAAAAACCGTCATTAACTGTATTATAAACCGCCACTAACTGTACAAAAAACGGCCACTAATCGTCATTTTTTTGTTAAG GGACCAAAATCAAACACTTTTATAAACACATGACTAATATGACAGTTAACCCTTAATAAAATATAAGATATATGATGTGA TATAGTAAGAGGATGAAAAGGGAATATAAAGAAAAAGATGATTAAGAGAACTTTGAAGGGCTAAAGTTAATGTGAAAATT ACATGTTGAACGGATATCTATGTTTGATTATAGGTTTGTCACATGTGTTGGTGACTTCTGACTAGGTAAAAAATATGTTT TCATTAGATCATAAAAACTAATTTATATCAAACAAAATTTCCATGAACAAAAAAGATGAAGTTTTTCTATGAACCATTTT AGATTCGGGTAAGGAACAGAAATACATTTACCCTAAAAAATCTAAATTTGATGAAAAAAATGGAAATACATTGATTATGT AAAATTATTGACTTTGACCTCTACACCTACACGGATAGATACAACTTATAATAGGGGCTTCGCTCACTTTAAGGTTTTAA CACAAATATTAGAAAACCATATTAATGAACATTGAACGAACGAGTTGGATGATTTAGTTAAGGAACATCTCATCTCAGTT AAGGTCGATCAGTCCTACAATGACTCACTTAATAACAAGTCAACGAGGCTGCCCAATGGAAACTTGCTCTTAGAAGGCTT ATAGTGGGTCTTTCTAAAGACTTGCAAAGACATCTATGATGGACTCCGAGCTTATAAATACAAGTGTAGTTGTTCAATTA CGTAACTTTTGCTCATAATGAAGTAATACTCTGTAATTATCTCTTTGTTCTCACACTAACTTTAACGTCTGAGTATATAC TATAAGTACAATTATGTCGTGTAAACATAGTTTTGTTGTACGAGGTGAACCAGTCATGACCGAACACAACTACCGAAGGA AAAAGAACCACACAAATCAAAATAACTGAAACAACTCATATATAGAATTTTAAATGAATTATGTTATGTAACATTTAAAC AATTAATAACCAAATTAATGTTTAAACAAATAATATAAATTAGTCATCAGCAGAGACTGCAATGCACCCGCTGATTGGTT GGTCCGGAAGGGTTCGTCAACACCAGCCATGGACCTTTGCATACTGGAGGACCCTCCTTCAGATTTAGAGATCCTAGTAC TAAGGGATCGTTTAGCTATTACTTAGTTCTTTTGTTTCGGTTGTTTCATTTCCGATGTAGCAAAAAAAAAATTTAACTTT TGAAATGAATTATGTTATGTAACATTTAAACAATTAATAATCAAATTAATCAAATTAATGTTTAAACATCAATATAAAAT TAGTCAGGAACTTTTCAAAAAAAGAAAACAATATAAAATTAGTCAATAAATAATAATAATTATTTTGTTAAAACTTTTGA AACGAATTATGTTAAGTAACATTTAAACAATTAATAATCAAATTAATGTTTAAACATAACATAAAATTAGTCAATAAATA GTAATAATTATTTTTAAAACTTTTGAAGTATTTTCCTATATATACTGTTATTTTTATGTATATATCAGTTACACAAACCA CAATATACAATTTCATATAACACCATGTCAATATTTATGCAACCTTTCTTTTCACTTGCTTTGGCCTTATTCCTTCTCTC AGCTGAAGCAGCCACTGTGCTAGACTCGGTGGTTCCGCAACTCTCGGCAGAGGCCAAGGAGTTCTTAGACGCGCACAACT GGGCAAGAGCCGAAGTGGGTGTTGAACCGCTGGAGTGGAGCGAGGCGCTGGCCAAGGATGCGGGCCTGTTTGCCCGATAC CAAAGGGACCGCTTAGGGTGTAAGTTGGCAAATTTCAGTCACAATAAGTATGGAAGTAACCAGGATTTGGGAGGCATGGG GTGGACACCAAGCGTCGCTGTGCAAGATTGGGTGAACGAGAAAGAGTTCTATAGCTACAGGACCAACTCCTGCGTGGCAC CGAGCTTCCCATGTTGGCATTACACGCAGGTGGTGTGGAGGAAGTCAAAGCAGGTGGGGTGCGCACAACTCACGTGTGTT GTGGATAAGCTTATCTTGACCATTTGTTTTTATGATCCTCCGGGAAACATCAACGGGGAGAGCCCATACTGATGATTCTA ATGCCAATGTCGCTTTATATTTAGCACGACACTAAGAAAGATTACTTTATCTCATACAAGAATTTTTTATATTAGTTTAC AGAGTTATGGTTCATTCACGTTATTTCTTCATCTTAGCTCCATCTTTTTATTAAGGCTTAATACATCAGAAGGTCTCTAA AATTATAAAGGGAATCAGTTTCAGGGTCTGTAAAATTTTCGCATCAAATTGGGTTCCTAAGAAATTTATTTTAATTCAAT TAAGCTAAAATGCTGTCAGATATGACTGTCAATATGGGCCAGCCCGGCCCATATGGGTCAGCCCGTATGGATTGGGTTGA AAACGGGTTGGGTTGCGTCAACCCGAGGTCTTAACGAGCCAGGAAAATATGAACCCAACCCGGCTCGCTACGAGCTCGCG GGCTGGCTCGCGGATTGAGTGAAATAAATATAAAAATAGAGAAATTGGATTAGAAAATGTTTAAAATGTTATAAAAAAAT AATTTCAAAAAAATACTTACGGAAATTGGTATGAACACATAAGAAAGAGGTTTATCAACGCAATTATTTTTATCTCACAT TTGAAATATAGAAAAAGAATTTAGTTTACAGGATTTAAGAACACAATTATTTTACTATCACATTTAAAATGAGATAACTA ATATAATAACAATAAATAAATTAAAACACAAAAACTCGACTCAAATTTAAAGAAATGAAAATTTCTATTTTTTTATCTAA AAATAATCCATAAAACTAAC
CDS sequence (LotjaGi2g1v0396200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCGTGTGCGCATCAAAGACCAATGAAAAACCAAGAGCAAGTGGAAAGGGTGGTCGTGGTGGCGGTGGTGCGGCGGA ATCTTTCCGGCGGCCGTCGTCAGTCATGGTGATGAACTTGGCCGGCGGTGGAATCAAGGAGTACAAGCAACCGGTCCCAG CTAGAGTTGTTGTGTCGGAGAATCCTGATTACTACCTATGTAACTCAGAGTCAATGTGCGTCGGCACGTGCATGCCACGC GTTCCTGATGAGGAGGTGCTTCTACCTGGCCGAATTTACTTTCTAGTCCCTCTCTCTCATTCTCATCACCAGTTGTCTCT CCCTCTCCTCTGTGATCTCGCTGTTAAAGCTAGTTCAGTGCTGGATAATGCAAATCCTTCTACTTCCACCACCACCAGCA CAAGCTGTAAGCAAGGAACAGAGCCTATGTTCATCTTCAACGCCCTTAACTTTGACCCTTCATTCTGTTTTCATCGACCC TGA
Protein sequence (LotjaGi2g1v0396200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVCASKTNEKPRASGKGGRGGGGAAESFRRPSSVMVMNLAGGGIKEYKQPVPARVVVSENPDYYLCNSESMCVGTCMPR VPDEEVLLPGRIYFLVPLSHSHHQLSLPLLCDLAVKASSVLDNANPSTSTTTSTSCKQGTEPMFIFNALNFDPSFCFHRP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 127 | 127 | 5.3E-57 | – | |
| PANTHER | 1 | 127 | 127 | 5.3E-57 | – | |
| MobiDBLite | 1 | 28 | 28 | - | – | |
| Pfam | 31 | 129 | 99 | 1.8E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0396200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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