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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0396300 |
| Transcript ID | LotjaGi2g1v0396300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | HTH-type transcriptional regulator; TAIR: AT4G37240.1 HTH-type transcriptional regulator; Swiss-Prot: sp|A2ST18|Y1307_METLZ UPF0179 protein Mlab_1307; TrEMBL-Plants: tr|V7CIX4|V7CIX4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0396300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89388364..89389350) extracted from Lotus japonicus Gifu genome v1.2.
CCCCGCTTCTCCAGCTAAAACTACTCACCCCTCCTTCCTTTGCCTCCTCACAACAACACCATCTACCGAGTCACGACTCA CTGAGTCGTTTCATAATGGGAAACTGCAAATCCTCCGATTCAACTCAGGTCGCCACGGCCAAACTCGTCCTGCACGACGG AAGGTTACAGGAGTTTTCATACCCAGTCAAGGTTTCCTACTTGATGCAGGCGTACCCAGCATGCTTCATATGCAACTCCG ACGAGCTTGGCTTCGACGACGTTGTCACCGCCGTTGATGAGAACCAGGTGTTGCAGCCTGGCCAGCTTTATTTCGCTCTT CCGTTGAGCTGGTTGCGGCATCCTTTGCAGGCTCACGAGATGGCTGCATTGGCCGTTAAGGCCAGCTCCGCGCTCATGAA AAGCGCCGCCTCTGATAAATACGGTTACCGCCGGAAGCAGGTTATGTTCTCCGGTGAATGTGACGTTAAGCGTGAGTCTC CGGTGGATGGTTCAGGCGGCGGTACTGTGCATAGGTCGAGAAGAGTAAGGACCCGTGGCGGTAGTGCTGGTGGTGGGCAG TTTTCGGCGTTGATGTTGAGTTCGATACCGGAGTAGGGGTAGTTTCGGAAGTAATGTTAGACGGTGAATTTTTGTTGTAA ATAGATTTTTTTTAAAACAAAAATATAAGATTTTGATGACTACAGCTGTTTGTTTCGGGGAACAATGAAAGCAATTTAGA TTCACGAAGAGTTAGACAAATTGGATATTCCATTTGGATATTTTGACCACAGAGTCACATTTATTATTCGGTTCCCTTAA AATTGTGGTAATTTTTAGCATAAGTTTATTTTCGAGTGCCAGTTTTTCATTCTTAGTAGCAGATTGACCCAAATGATGAA CAGCAAACAAAAGCGTCCAAATTAGTAGCAGTAGTTTGCCATTTAGGGTAATTAACTTACTAGCCTTATGCATGTATATA TGTGTCCGTTAAATAATTAAATTATTT
CDS sequence (LotjaGi2g1v0396300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAACTGCAAATCCTCCGATTCAACTCAGGTCGCCACGGCCAAACTCGTCCTGCACGACGGAAGGTTACAGGAGTT TTCATACCCAGTCAAGGTTTCCTACTTGATGCAGGCGTACCCAGCATGCTTCATATGCAACTCCGACGAGCTTGGCTTCG ACGACGTTGTCACCGCCGTTGATGAGAACCAGGTGTTGCAGCCTGGCCAGCTTTATTTCGCTCTTCCGTTGAGCTGGTTG CGGCATCCTTTGCAGGCTCACGAGATGGCTGCATTGGCCGTTAAGGCCAGCTCCGCGCTCATGAAAAGCGCCGCCTCTGA TAAATACGGTTACCGCCGGAAGCAGGTTATGTTCTCCGGTGAATGTGACGTTAAGCGTGAGTCTCCGGTGGATGGTTCAG GCGGCGGTACTGTGCATAGGTCGAGAAGAGTAAGGACCCGTGGCGGTAGTGCTGGTGGTGGGCAGTTTTCGGCGTTGATG TTGAGTTCGATACCGGAGTAG
Protein sequence (LotjaGi2g1v0396300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNCKSSDSTQVATAKLVLHDGRLQEFSYPVKVSYLMQAYPACFICNSDELGFDDVVTAVDENQVLQPGQLYFALPLSWL RHPLQAHEMAALAVKASSALMKSAASDKYGYRRKQVMFSGECDVKRESPVDGSGGGTVHRSRRVRTRGGSAGGGQFSALM LSSIPE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 165 | 165 | 3.9E-53 | – | |
| PANTHER | 1 | 165 | 165 | 3.9E-53 | – | |
| Pfam | 1 | 166 | 166 | 1.9E-27 | ||
| MobiDBLite | 127 | 156 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0396300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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