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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0396700 |
| Transcript ID | LotjaGi2g1v0396700.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phototropic-responsive NPH3 family protein; TAIR: AT5G66560.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q94A73|Y5656_ARATH BTB/POZ domain-containing protein At5g66560; TrEMBL-Plants: tr|A0A151R6R9|A0A151R6R9_CAJCA BTB/POZ domain-containing protein family; Found in the gene: LotjaGi2g1v0396700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89433054..89436922) extracted from Lotus japonicus Gifu genome v1.2.
AGAAATCTTAATGGTTTCTCAAACCCTAAATTGTGATTACACTGTTCTGATTCATATATCAGAACTAATCAAACAAAGTT AATAGGTGAGAAAAAGAGAATTCTTATTCTTGAATATTCCATCATTCACGCAAAAGTAAGTATAGGACTTTTCAACGGCG CCTCCATCCGACATCTCAATTCAAAGGAGAGAACATCAGTAGGTAGAGATTGTGAGTGTGGGACAGTGGGAGTGAAAGAC TAGAAAGAGGAAAGGAAGCTCTCATAAAAGGAAGGTAAACTATAACCCTTTTTCAGGAATTTGCACACTGTTTCACCTAG TTCATTCCTTTTTTCCTCTTTGTAATCAACTCTTATTACCTGGTTTTTATCGATAAAACCTCATCAGAAAGCACAAAAAC ACAATTTACTATCATTCTAATCTTCTATTTTTTTGCAATTGCCTCTGCAAGGTATTAGAGTTCAACCATTTCATCATTCA TGGATATGAATTTGTATTGTACTATATTGTAGTAACTAGTGAGCTAGTGTTAGATTTCAGGAGAATCATTATACATTAAA ATGGCAACAGGGGAAAAACTCAGTTCCAGAGGAAATTCCTGGTTAGATCAATACCTTTTCTCTCTCACTCACTCACTCAC TCACTGCCTTTGAACTTTTCCATATACAAAATAAATTGTTCCTCCATGCAGGTTCTGCACAACTGGATTACCAAGTGACA TTGTGGTTCAACTTGATGACATGAACTTCCATCTTCATAAGGTAAGAATTGAAATTGCAATCCATTATGAATTCAATACT TTAACAACATTCCCCATTCTCTGAAATATGTTGTTTGCATGTTTCATTCAGATTCCTCTCATGTCAAAAAGTAGAAAGTT TCACCAACTGATTACAGAGCAAGACGATGAGGAAGAAGGAGAAGATGTTGAACACCTTCACTTGGCACTCGCAGACTTCC CTGGCGGCTCAGAAGCCTTCGAATTGGCGGTGAAATTCTGTTACGACGTCAAAATCGACTTATCCTCTTCCAACGTGGCT TCTCTCCGCTGCGCCGGAGAGTTTCTAGAGATGACAGAAGAGTATTCTGAAGACAATCTCATCTCCAAGACAGAGCAGTT TCTTTCTCGCTCAGTCCTCAACAGCGTCAAGGACTCCATCACAGCACTGCAATCCTGCGAGCGACTCATGCCTCTGGCGG AGACATTGGAAATCACGAAGAGGTGCATCGCTTCCATTGTCTCCGCCGCATCATCGGCGGATCCCGCTCCGTTCAGTTGG CCGGTGAGCGATTCCGCATCCAAACAGAGCCTCGAGATCGGAATAAGGAGAGGCAGAAGAAGAAACGGTGAAGAAGATGC TTGGTTTGAGGAGATTTCACTTCTCGGTTTGCCTCTGTTCAAGCAATTGATTCTCGCCATGCGAGCATCTGAATTGAAAC CAGAGGTAATCAAAACCTGCCTCATCCATTACGCCAAGAAACGAATTCCAGGTTTATCGAGGTCAAATCGGAAACCGTTA ACATCATCATCATCTTCAGAAGCAGAGCAGAAAGAGCTATTGGAGACTGTGATCTCGAATCTTCCGCTGGAGAAAACTCC AAAGCCATCAACCGCCACGAGATACCTCTTCGGACTGTTACGCACCGCCATTATACTGAAAGCTTCCGAAGAATGCAGAA ACGCGTTGGAGAAGAAGATCGGATCGCAGCTTGAAGAAGCTACTCTCGACGATCTTCTCATCCCTAGCTACTCCTATCTC AACGAAACTCTCTACGACGTTGATTGCGCGGCGAGAATTCTAGGTCACTTCTTGGAGCAAGAACGGAATGCCGCTGCTGC AAACGACGGCGGCATTACGAGATCGCCGGCGTTGATGCTCGTCGGGAAACTCATCGACGGCTATCTCGCCGAGATCGCCT CCGACGCGAATCTCACGGTTTCCAAATTCTACGATCTTGCCATCTCTCTTCCCGACGGAGCGAGGCTCTTCGACGACGGT CTCTATCGCGCGGTTGATGTCTACCTCAAGGTACTATTGAATATAGATTATACCGATTTTCTGTTATGAGATTCTGTTAT AACAGAATTGGTTATTGAAATTGGAAAATTCGGTTACGTTTGCAGGCGCATCCGTGGGTTACGGAATCGGAGAGGGAGAA GATTTGCGGAGTTTTGGATTGTCAGAAGCTCACACTGGAGGCGTGCACTCACGCCGCGCAGAATGAGAGACTACCGGTGC GAGCGTTGGTTCAGGTGCTATTCTTCGAGCAGCTTCAGCTGCGGCACGCCGTCGCCGGAACGCTGATATCGGCGGTGGAT CCCGGGAGGTTATCGGGAGCGTTGAGATCGGAAGTGGAGGGTGAGGAGGAGGAGGAGGATCGTGGTGGAGAATGCGATGG TAGTCACACGTGGCGGGTGACGGTGAGAGAGAATCAGGTGTTGCGCTTGGACATGGATAGCATGAGGACGCGGGTGCACC AGTTGGAGCGAGAGTGTTCCACCATAAGGAAAGTGATCGAGAATATGGACAAGCCGGGACCACGCGGCGGTGGTGGGTGG CGGGCCACCCTGGAGAAGAAGATTGGTTGCAAATTCAAGACGAATGTATGTGATTCGCATGATCATGTGGTTGCTGATAC GCGTAAGGGTAGGTCCCACCAGCGTCCTCACCGTGAATAGGCAGCACCTTAACACTTCCCTCGCGCTAAAATAATCCATT GAAGTTTTAATCAAATCCCACCAGTAATTTCAAATCTGTGTCATAAAAAAATCAAAGAAAGGAAGAAAACACTCCAAAAT ATACCCTCCATTTTTCTAGTAGTTGTTTTTCTATCACATGATATTATTCTTTTGTCGTATTAATTTGGGTGTTAAAACAT TTTCCATAAAAATTTGGAGAATGTTTGAGCCAATTATTTGGTTGATTAGGTAAATTGCTGCTTGACATAGTTAAGGGGAT GGGGACTCATAAGGAGTTTGTAATTTGACTAGCGTTGCATGGCACAATGAAGAGAGCGAAATTTCATGTAAATTACAGGT TGTTATTGGTTACAGATAATTGGTCATCTTATTGCTTCTAGTGAAAGCTGGCTCGTGCTTAACTGCTGACTAAAAACACT GAAGTACTTGGAATGCACCTAAGAAATTAAAAGAAGATAGAAAGGGATACAAGCTGAAGAGACATTATTATTGCTGTCCA TGTCTTGTAGGGCAAATGATTTGATTCTTACTTTGGAAAGTAGGTAATGGTCAAATGTGTATGATTTCCTTTGTGTTCCG CAATTCTTTAGCACCATTGATTTTTATTTGGGGGACTCGTCCATGGTCCACATGGTCCACATCTTCTCATGCAACTATTA TGTTGACAAGAGACCGTGCAACTGAAAAATGACACTCCACTACTCCAGTGATAGAGAATGCGCAGGAACCTTCCCTTAAA ATGTGCAATTCATCTAAAACGAAGACAGCTAATAACAATACAATGTGGATATGTAGATATGCTAATCAGTTAAGTAATTA ATCAGCTTGATGGATTAATCCGGTCAAATCACTCAAGACTATGTTAATTGAGGATGAAATGATCGAATTCTAGTATAAGT AAAGGGGAGGAGAGTTTCATTTAGGTTGGAGAGGGGGTCTTGAGATCGTCCACCATCGTCCACCGTAACCAAGGCCATAA GGGATCCCCTATAAAGACACTCAAATCCCTAAATTAGTGACTAGTGAAGTTTGAAGGTTTCTCTAAGACTTATATAAAGA TTGTGTACCCTCTCTAAGGTTGTATCAGACCCTTTATTTTGTGAGCACGGGTGGATATGGAACTTGAGGGATTTTAATAA GTATTTTGTTTTTGAATGAATCTTGGTCG
CDS sequence (LotjaGi2g1v0396700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTTTGCATGTTTCATTCAGATTCCTCTCATGTCAAAAAGTAGAAAGTTTCACCAACTGATTACAGAGCAAGACGA TGAGGAAGAAGGAGAAGATGTTGAACACCTTCACTTGGCACTCGCAGACTTCCCTGGCGGCTCAGAAGCCTTCGAATTGG CGGTGAAATTCTGTTACGACGTCAAAATCGACTTATCCTCTTCCAACGTGGCTTCTCTCCGCTGCGCCGGAGAGTTTCTA GAGATGACAGAAGAGTATTCTGAAGACAATCTCATCTCCAAGACAGAGCAGTTTCTTTCTCGCTCAGTCCTCAACAGCGT CAAGGACTCCATCACAGCACTGCAATCCTGCGAGCGACTCATGCCTCTGGCGGAGACATTGGAAATCACGAAGAGGTGCA TCGCTTCCATTGTCTCCGCCGCATCATCGGCGGATCCCGCTCCGTTCAGTTGGCCGGTGAGCGATTCCGCATCCAAACAG AGCCTCGAGATCGGAATAAGGAGAGGCAGAAGAAGAAACGGTGAAGAAGATGCTTGGTTTGAGGAGATTTCACTTCTCGG TTTGCCTCTGTTCAAGCAATTGATTCTCGCCATGCGAGCATCTGAATTGAAACCAGAGGTAATCAAAACCTGCCTCATCC ATTACGCCAAGAAACGAATTCCAGGTTTATCGAGGTCAAATCGGAAACCGTTAACATCATCATCATCTTCAGAAGCAGAG CAGAAAGAGCTATTGGAGACTGTGATCTCGAATCTTCCGCTGGAGAAAACTCCAAAGCCATCAACCGCCACGAGATACCT CTTCGGACTGTTACGCACCGCCATTATACTGAAAGCTTCCGAAGAATGCAGAAACGCGTTGGAGAAGAAGATCGGATCGC AGCTTGAAGAAGCTACTCTCGACGATCTTCTCATCCCTAGCTACTCCTATCTCAACGAAACTCTCTACGACGTTGATTGC GCGGCGAGAATTCTAGGTCACTTCTTGGAGCAAGAACGGAATGCCGCTGCTGCAAACGACGGCGGCATTACGAGATCGCC GGCGTTGATGCTCGTCGGGAAACTCATCGACGGCTATCTCGCCGAGATCGCCTCCGACGCGAATCTCACGGTTTCCAAAT TCTACGATCTTGCCATCTCTCTTCCCGACGGAGCGAGGCTCTTCGACGACGGTCTCTATCGCGCGGTTGATGTCTACCTC AAGGTACTATTGAATATAGATTATACCGATTTTCTGTTATGA
Protein sequence (LotjaGi2g1v0396700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLFACFIQIPLMSKSRKFHQLITEQDDEEEGEDVEHLHLALADFPGGSEAFELAVKFCYDVKIDLSSSNVASLRCAGEFL EMTEEYSEDNLISKTEQFLSRSVLNSVKDSITALQSCERLMPLAETLEITKRCIASIVSAASSADPAPFSWPVSDSASKQ SLEIGIRRGRRRNGEEDAWFEEISLLGLPLFKQLILAMRASELKPEVIKTCLIHYAKKRIPGLSRSNRKPLTSSSSSEAE QKELLETVISNLPLEKTPKPSTATRYLFGLLRTAIILKASEECRNALEKKIGSQLEEATLDDLLIPSYSYLNETLYDVDC AARILGHFLEQERNAAAANDGGITRSPALMLVGKLIDGYLAEIASDANLTVSKFYDLAISLPDGARLFDDGLYRAVDVYL KVLLNIDYTDFLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 402 | 395 | 3.4E-168 | – | |
| PANTHER | 8 | 402 | 395 | 3.4E-168 | ||
| CDD | 10 | 94 | 85 | 1.30022E-23 | – | |
| SUPERFAMILY | 10 | 99 | 90 | 1.26E-6 | ||
| Pfam | 177 | 405 | 229 | 9.8E-73 | ||
| ProSiteProfiles | 177 | 413 | 237 | 67.461 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0396700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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