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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0396700 |
| Transcript ID | LotjaGi2g1v0396700.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phototropic-responsive NPH3 family protein; TAIR: AT5G66560.3 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q94A73|Y5656_ARATH BTB/POZ domain-containing protein At5g66560; TrEMBL-Plants: tr|A0A151R6R9|A0A151R6R9_CAJCA BTB/POZ domain-containing protein family; Found in the gene: LotjaGi2g1v0396700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89433629..89436766) extracted from Lotus japonicus Gifu genome v1.2.
GGCGCCTCCATCCGACATCTCAATTCAAAGGAGAGAACATCAGTAGGTAGAGATTGTGAGTGTGGGACAGTGGGAGTGAA AGACTAGAAAGAGGAAAGGAAGCTCTCATAAAAGGAAGGTAAACTATAACCCTTTTTCAGGAATTTGCACACTGTTTCAC CTAGTTCATTCCTTTTTTCCTCTTTGTAATCAACTCTTATTACCTGGTTTTTATCGATAAAACCTCATCAGAAAGCACAA AAACACAATTTACTATCATTCTAATCTTCTATTTTTTTGCAATTGCCTCTGCAAGGTATTAGAGTTCAACCATTTCATCA TTCATGGATATGAATTTGTATTGTACTATATTGTAGTAACTAGTGAGCTAGTGTTAGATTTCAGGAGAATCATTATACAT TAAAATGGCAACAGGGGAAAAACTCAGTTCCAGAGGAAATTCCTGGTTAGATCAATACCTTTTCTCTCTCACTCACTCAC TCACTCACTGCCTTTGAACTTTTCCATATACAAAATAAATTGTTCCTCCATGCAGGTTCTGCACAACTGGATTACCAAGT GACATTGTGGTTCAACTTGATGACATGAACTTCCATCTTCATAAGGTAAGAATTGAAATTGCAATCCATTATGAATTCAA TACTTTAACAACATTCCCCATTCTCTGAAATATGTTGTTTGCATGTTTCATTCAGATTCCTCTCATGTCAAAAAGTAGAA AGTTTCACCAACTGATTACAGAGCAAGACGATGAGGAAGAAGGAGAAGATGTTGAACACCTTCACTTGGCACTCGCAGAC TTCCCTGGCGGCTCAGAAGCCTTCGAATTGGCGGTGAAATTCTGTTACGACGTCAAAATCGACTTATCCTCTTCCAACGT GGCTTCTCTCCGCTGCGCCGGAGAGTTTCTAGAGATGACAGAAGAGTATTCTGAAGACAATCTCATCTCCAAGACAGAGC AGTTTCTTTCTCGCTCAGTCCTCAACAGCGTCAAGGACTCCATCACAGCACTGCAATCCTGCGAGCGACTCATGCCTCTG GCGGAGACATTGGAAATCACGAAGAGGTGCATCGCTTCCATTGTCTCCGCCGCATCATCGGCGGATCCCGCTCCGTTCAG TTGGCCGGTGAGCGATTCCGCATCCAAACAGAGCCTCGAGATCGGAATAAGGAGAGGCAGAAGAAGAAACGGTGAAGAAG ATGCTTGGTTTGAGGAGATTTCACTTCTCGGTTTGCCTCTGTTCAAGCAATTGATTCTCGCCATGCGAGCATCTGAATTG AAACCAGAGGTAATCAAAACCTGCCTCATCCATTACGCCAAGAAACGAATTCCAGGTTTATCGAGGTCAAATCGGAAACC GTTAACATCATCATCATCTTCAGAAGCAGAGCAGAAAGAGCTATTGGAGACTGTGATCTCGAATCTTCCGCTGGAGAAAA CTCCAAAGCCATCAACCGCCACGAGATACCTCTTCGGACTGTTACGCACCGCCATTATACTGAAAGCTTCCGAAGAATGC AGAAACGCGTTGGAGAAGAAGATCGGATCGCAGCTTGAAGAAGCTACTCTCGACGATCTTCTCATCCCTAGCTACTCCTA TCTCAACGAAACTCTCTACGACGTTGATTGCGCGGCGAGAATTCTAGGTCACTTCTTGGAGCAAGAACGGAATGCCGCTG CTGCAAACGACGGCGGCATTACGAGATCGCCGGCGTTGATGCTCGTCGGGAAACTCATCGACGGCTATCTCGCCGAGATC GCCTCCGACGCGAATCTCACGGTTTCCAAATTCTACGATCTTGCCATCTCTCTTCCCGACGGAGCGAGGCTCTTCGACGA CGGTCTCTATCGCGCGGTTGATGTCTACCTCAAGGTACTATTGAATATAGATTATACCGATTTTCTGTTATGAGATTCTG TTATAACAGAATTGGTTATTGAAATTGGAAAATTCGGTTACGTTTGCAGGCGCATCCGTGGGTTACGGAATCGGAGAGGG AGAAGATTTGCGGAGTTTTGGATTGTCAGAAGCTCACACTGGAGGCGTGCACTCACGCCGCGCAGAATGAGAGACTACCG GTGCGAGCGTTGGTTCAGGTGCTATTCTTCGAGCAGCTTCAGCTGCGGCACGCCGTCGCCGGAACGCTGATATCGGCGGT GGATCCCGGGAGGTTATCGGGAGCGTTGAGATCGGAAGTGGAGGGTGAGGAGGAGGAGGAGGATCGTGGTGGAGAATGCG ATGGTAGTCACACGTGGCGGGTGACGGTGAGAGAGAATCAGGTGTTGCGCTTGGACATGGATAGCATGAGGACGCGGGTG CACCAGTTGGAGCGAGAGTGTTCCACCATAAGGAAAGTGATCGAGAATATGGACAAGCCGGGACCACGCGGCGGTGGTGG GTGGCGGGCCACCCTGGAGAAGAAGATTGGTTGCAAATTCAAGACGAATGTATGTGATTCGCATGATCATGTGGTTGCTG ATACGCGTAAGGGTAGGTCCCACCAGCGTCCTCACCGTGAATAGGCAGCACCTTAACACTTCCCTCGCGCTAAAATAATC CATTGAAGTTTTAATCAAATCCCACCAGTAATTTCAAATCTGTGTCATAAAAAAATCAAAGAAAGGAAGAAAACACTCCA AAATATACCCTCCATTTTTCTAGTAGTTGTTTTTCTATCACATGATATTATTCTTTTGTCGTATTAATTTGGGTGTTAAA ACATTTTCCATAAAAATTTGGAGAATGTTTGAGCCAATTATTTGGTTGATTAGGTAAATTGCTGCTTGACATAGTTAAGG GGATGGGGACTCATAAGGAGTTTGTAATTTGACTAGCGTTGCATGGCACAATGAAGAGAGCGAAATTTCATGTAAATTAC AGGTTGTTATTGGTTACAGATAATTGGTCATCTTATTGCTTCTAGTGAAAGCTGGCTCGTGCTTAACTGCTGACTAAAAA CACTGAAGTACTTGGAATGCACCTAAGAAATTAAAAGAAGATAGAAAGGGATACAAGCTGAAGAGACATTATTATTGCTG TCCATGTCTTGTAGGGCAAATGATTTGATTCTTACTTTGGAAAGTAGGTAATGGTCAAATGTGTATGATTTCCTTTGTGT TCCGCAATTCTTTAGCAC
CDS sequence (LotjaGi2g1v0396700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTTTGCATGTTTCATTCAGATTCCTCTCATGTCAAAAAGTAGAAAGTTTCACCAACTGATTACAGAGCAAGACGA TGAGGAAGAAGGAGAAGATGTTGAACACCTTCACTTGGCACTCGCAGACTTCCCTGGCGGCTCAGAAGCCTTCGAATTGG CGGTGAAATTCTGTTACGACGTCAAAATCGACTTATCCTCTTCCAACGTGGCTTCTCTCCGCTGCGCCGGAGAGTTTCTA GAGATGACAGAAGAGTATTCTGAAGACAATCTCATCTCCAAGACAGAGCAGTTTCTTTCTCGCTCAGTCCTCAACAGCGT CAAGGACTCCATCACAGCACTGCAATCCTGCGAGCGACTCATGCCTCTGGCGGAGACATTGGAAATCACGAAGAGGTGCA TCGCTTCCATTGTCTCCGCCGCATCATCGGCGGATCCCGCTCCGTTCAGTTGGCCGGTGAGCGATTCCGCATCCAAACAG AGCCTCGAGATCGGAATAAGGAGAGGCAGAAGAAGAAACGGTGAAGAAGATGCTTGGTTTGAGGAGATTTCACTTCTCGG TTTGCCTCTGTTCAAGCAATTGATTCTCGCCATGCGAGCATCTGAATTGAAACCAGAGGTAATCAAAACCTGCCTCATCC ATTACGCCAAGAAACGAATTCCAGGTTTATCGAGGTCAAATCGGAAACCGTTAACATCATCATCATCTTCAGAAGCAGAG CAGAAAGAGCTATTGGAGACTGTGATCTCGAATCTTCCGCTGGAGAAAACTCCAAAGCCATCAACCGCCACGAGATACCT CTTCGGACTGTTACGCACCGCCATTATACTGAAAGCTTCCGAAGAATGCAGAAACGCGTTGGAGAAGAAGATCGGATCGC AGCTTGAAGAAGCTACTCTCGACGATCTTCTCATCCCTAGCTACTCCTATCTCAACGAAACTCTCTACGACGTTGATTGC GCGGCGAGAATTCTAGGTCACTTCTTGGAGCAAGAACGGAATGCCGCTGCTGCAAACGACGGCGGCATTACGAGATCGCC GGCGTTGATGCTCGTCGGGAAACTCATCGACGGCTATCTCGCCGAGATCGCCTCCGACGCGAATCTCACGGTTTCCAAAT TCTACGATCTTGCCATCTCTCTTCCCGACGGAGCGAGGCTCTTCGACGACGGTCTCTATCGCGCGGTTGATGTCTACCTC AAGGCGCATCCGTGGGTTACGGAATCGGAGAGGGAGAAGATTTGCGGAGTTTTGGATTGTCAGAAGCTCACACTGGAGGC GTGCACTCACGCCGCGCAGAATGAGAGACTACCGGTGCGAGCGTTGGTTCAGGTGCTATTCTTCGAGCAGCTTCAGCTGC GGCACGCCGTCGCCGGAACGCTGATATCGGCGGTGGATCCCGGGAGGTTATCGGGAGCGTTGAGATCGGAAGTGGAGGGT GAGGAGGAGGAGGAGGATCGTGGTGGAGAATGCGATGGTAGTCACACGTGGCGGGTGACGGTGAGAGAGAATCAGGTGTT GCGCTTGGACATGGATAGCATGAGGACGCGGGTGCACCAGTTGGAGCGAGAGTGTTCCACCATAAGGAAAGTGATCGAGA ATATGGACAAGCCGGGACCACGCGGCGGTGGTGGGTGGCGGGCCACCCTGGAGAAGAAGATTGGTTGCAAATTCAAGACG AATGTATGTGATTCGCATGATCATGTGGTTGCTGATACGCGTAAGGGTAGGTCCCACCAGCGTCCTCACCGTGAATAG
Protein sequence (LotjaGi2g1v0396700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLFACFIQIPLMSKSRKFHQLITEQDDEEEGEDVEHLHLALADFPGGSEAFELAVKFCYDVKIDLSSSNVASLRCAGEFL EMTEEYSEDNLISKTEQFLSRSVLNSVKDSITALQSCERLMPLAETLEITKRCIASIVSAASSADPAPFSWPVSDSASKQ SLEIGIRRGRRRNGEEDAWFEEISLLGLPLFKQLILAMRASELKPEVIKTCLIHYAKKRIPGLSRSNRKPLTSSSSSEAE QKELLETVISNLPLEKTPKPSTATRYLFGLLRTAIILKASEECRNALEKKIGSQLEEATLDDLLIPSYSYLNETLYDVDC AARILGHFLEQERNAAAANDGGITRSPALMLVGKLIDGYLAEIASDANLTVSKFYDLAISLPDGARLFDDGLYRAVDVYL KAHPWVTESEREKICGVLDCQKLTLEACTHAAQNERLPVRALVQVLFFEQLQLRHAVAGTLISAVDPGRLSGALRSEVEG EEEEEDRGGECDGSHTWRVTVRENQVLRLDMDSMRTRVHQLERECSTIRKVIENMDKPGPRGGGGWRATLEKKIGCKFKT NVCDSHDHVVADTRKGRSHQRPHRE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 577 | 569 | 5.5E-244 | – | |
| PANTHER | 9 | 577 | 569 | 5.5E-244 | ||
| CDD | 10 | 94 | 85 | 6.36915E-24 | – | |
| SUPERFAMILY | 10 | 99 | 90 | 2.2E-6 | ||
| ProSiteProfiles | 177 | 452 | 276 | 94.147 | ||
| Pfam | 177 | 428 | 252 | 4.1E-89 | ||
| MobiDBLite | 475 | 494 | 20 | - | – | |
| Coils | 504 | 524 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0396700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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