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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0400200 |
| Transcript ID | LotjaGi2g1v0400200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin dependent kinase inhibitor; TAIR: AT1G49620.1 Cyclin-dependent kinase inhibitor family protein; Swiss-Prot: sp|Q94CL9|KRP7_ARATH Cyclin-dependent kinase inhibitor 7; TrEMBL-Plants: tr|Q9FS28|Q9FS28_PEA Cyclin dependent kinase inhibitor; Found in the gene: LotjaGi2g1v0400200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89788356..89791186) extracted from Lotus japonicus Gifu genome v1.2.
CTGCGATAAACGACAAATCCTCGTGTGCTTGTTGTGGCGTCCACGTCACAGAAAGAAGAGAAACGATGGTGGTGATTAGT AGAAGGGTAGAATTCAGTGAATGGCAAATTCGCGTTTAAGCAATTGCGGAAGGGACATATCCGTAATTGAAATATTGAAC ACAATTATTTTGCTTAAGACCGGTTCTCCACCAAACGGAATTATCGAACGCAACGCAAATACATGATCATGAAGAGATGA TTCTTTCTTCTTCTCCTCCTTCTTCTCGTTTCCACTGCCAAAATCTGCACTGTTATCTCATCCCTGCACCTTGCACCTTG ATCCTCTTCCATTAATTTCTCCGTTTACGGTTTCCGTCAGCTTCCATGACGTGTCAGTCAATCCTTCGGCCAAGTTTCGG CGCTGGCTTGAACCCCACTTGATCCGCATAACGGCGCCGTCAATTTCCCCGTTTTGAGATTCCCCCGTCACTGTTAACGG AGACTGGACCACCACCACCACACTCACTCACACACTATGAAAATGCTATCACCCAATCCCAACCGTTGAACCCTCTCGTC ATTATCACATTTTTCGTCGTCTCCGTACTACACGCGCGCACTCTCTCTCTCTCTCTCTTACATTCACAAAAACGCACAGC ATCAGCGAGAAAGAGAGAGAGAGCACCTACAACACCTGAAAAGCGAGCGAGGAGTGAGGTGTGGAATTCGAAGGAGCACG TACTTGCAGAGAGAGATTCAATTCAATTCACTGATTGCGTAGTAGTCGTCAATGGAGATGGCACAGAACGGTGTCAGGAC ACGAGCTCAAGCCGCATTAGCCATGGAAGAAGAAGAAGAAGAAGCTACCAGTTCACCTGCACAAACACAAACACCAAAGA GAAGGAAGATCAACAACAACACCACCACCAAACCAGAACGAGAATTCCCTCACCACAAGGCTCAGACTCCGACGGCGGAA CGGCCTACCTCCGATGACTTACCGGCTGCCTCTTGCTGTTCCAGCAACGGATCCGTCGGGAACGATGAGAAAACGAACGA TCTGGAGGTAAGAGGAATTAATTTCCTGTGTTAATTCTCTGAACTGATGAACAATTACTGAACCTGCGTTTTGTAGCTCT CTCTCTCTTTAATTAATTACTCTACTAGTTACTACTACTACTACTCATTGAAATGAAATGGCTCTTTCACTTTCACTGGT TCAATTGCATTTACAGCGAAATTAATTAATGCAGTTTCAAACGTTTCTTCCTCAGGTTGAGAGCGCGCAAGTTGAAACGT CGACGCGCAATTGCGGTGAACAACAAGAAGAAGAAGAAGAAGAAACTCACAGGTTTAATTTAATTTTGAAATTAATTGAT TTTACCGTTTTTAATTTTTCAAAATTTGAAATCGCTTCCAGCAGTTTCATGTCGTTTGAGTTCGTTCGAAAACGCTTCGA ATCAACGGTACCTCACTCACAACAGTCATAAAATCTTTCAGTTCAAAACAAAATCCTGAGCCATTCTCTATATATACACG CACATTCATTCCATTTGTAATTCTGTGTCATCAGGAGAGAGATGAGCCACTCGAGCAAGAACGGAGGAAATTCTCAGGAG ATGGAGTCAATGGAGGCCAATTCTCACCGTCCTACATCAACAGCAGCGATCAGAAAGCCAACGGAATTGGAGCTCGATGA ATTCTTCTCCGCCCATGAGAAAGACATTCAGCAGCGTTTTCAAGACAAGTAAGTTCAATCAACACTCAATTTCACTCCTC TCTCACTCTCTCTCTTCTTTTTCCTTTTCTGATTTCACATCATAATCACCTTACCATATGTACAAAGCTTCATTCATGAT CATCGTTCCTCTTCAAATTGATCTTGTAGGTATAATTTTGATATCGTGAAGGATGTGCCATTGGAAGGACGCTACGAGTG GGTTCAGTTTAAGCCATGAACGATTTGCGTCCCTTTAGTTCTCACCAGCCACCGTAGAAGAAAGAAGCTAGGCAGTGATC GATTTGAACCTGCAACTTTGCTGACATTGTTATTATTCTTAGTTCTTACCTTTAGTTTAGACATTTTAGTTTTAATTTTA CCAGAACTATGTTATTTTGGTGTACAGCTTTTAGATTTTTCTGTGTTGTGGTGGTTGAGGTGATGAACAAGCTAGCTTTC AGCTTCGTTTGTTCTTTGTACTGATTTAACGCAGAAGAAGCTATAGCTTAAGCCTTACAGCTGTAGCTAATTGTGCTGAA TTTCTGTAAGTTCTCTCCCTGAAGAACAAAACGATTCGATTGATCCCTAGAAAAAGCGTTTCTGCAATCTGCATCGACTC TCGTTTTCTCTCTAACCTCCCCTAAAATTTCGTGTCCTTTATTCAATTTGTTTTAACTGTGATCCATCAAAGTCTGTGTT TGTATGATTGCATCTTCTTTTTCTTTTCTTTCTCACTTTCCTTTTTCTTAACTTTTTTGAAATTTCACAAGTATTTTAAA GAAATTCAAAACAGAAGAAAACAAGGAAGGAGAAGGAGAGTAATTAACCATTCTTCTGGAATCGCAGCTAGTTTTTCGTT TAATTGTGGGGCTTGGGAGAGGTACTTGTAGGGACAGGCATCATGCCGTGTAAGTTACGGGGTATGAGTTTGAGAGAGGG GTGGCAAAAGCTGATCTTATTATCCTCCCATGTGATAAGAGAAAGAAGAGTAGTAGTAGTAGTACTCTTCCAATCTTGGA ACCAAATCCACTGCACTTTTCACAAGTACAACAAAATTGGTAACAGAGTGAAAATTTGGAAGATTGTTAATTGTTATTTT CTGCATATACATACCTCTTTCTCGCTTGATC
CDS sequence (LotjaGi2g1v0400200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGATGGCACAGAACGGTGTCAGGACACGAGCTCAAGCCGCATTAGCCATGGAAGAAGAAGAAGAAGAAGCTACCAG TTCACCTGCACAAACACAAACACCAAAGAGAAGGAAGATCAACAACAACACCACCACCAAACCAGAACGAGAATTCCCTC ACCACAAGGCTCAGACTCCGACGGCGGAACGGCCTACCTCCGATGACTTACCGGCTGCCTCTTGCTGTTCCAGCAACGGA TCCGTCGGGAACGATGAGAAAACGAACGATCTGGAGGTTGAGAGCGCGCAAGTTGAAACGTCGACGCGCAATTGCGGTGA ACAACAAGAAGAAGAAGAAGAAGAAACTCACAGGAGAGAGATGAGCCACTCGAGCAAGAACGGAGGAAATTCTCAGGAGA TGGAGTCAATGGAGGCCAATTCTCACCGTCCTACATCAACAGCAGCGATCAGAAAGCCAACGGAATTGGAGCTCGATGAA TTCTTCTCCGCCCATGAGAAAGACATTCAGCAGCGTTTTCAAGACAAGTATAATTTTGATATCGTGAAGGATGTGCCATT GGAAGGACGCTACGAGTGGGTTCAGTTTAAGCCATGA
Protein sequence (LotjaGi2g1v0400200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEMAQNGVRTRAQAALAMEEEEEEATSSPAQTQTPKRRKINNNTTTKPEREFPHHKAQTPTAERPTSDDLPAASCCSSNG SVGNDEKTNDLEVESAQVETSTRNCGEQQEEEEEETHRREMSHSSKNGGNSQEMESMEANSHRPTSTAAIRKPTELELDE FFSAHEKDIQQRFQDKYNFDIVKDVPLEGRYEWVQFKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 151 | 151 | - | – | |
| PIRSF | 3 | 198 | 196 | 8.2E-35 | ||
| PANTHER | 11 | 198 | 188 | 5.7E-37 | – | |
| PANTHER | 11 | 198 | 188 | 5.7E-37 | – | |
| MobiDBLite | 27 | 41 | 15 | - | – | |
| MobiDBLite | 42 | 62 | 21 | - | – | |
| MobiDBLite | 71 | 86 | 16 | - | – | |
| MobiDBLite | 105 | 124 | 20 | - | – | |
| MobiDBLite | 125 | 148 | 24 | - | – | |
| Gene3D | 152 | 198 | 47 | 5.4E-8 | – | |
| Pfam | 153 | 195 | 43 | 7.3E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Cyclin-dependent protein serine/threonine kinase inhibitor activity | Stops, prevents or reduces the activity of a cyclin-dependent protein serine/threonine kinase. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Cell cycle arrest | A regulatory process that halts progression through the cell cycle during one of the normal phases (G1, S, G2, M). |
Expression pattern of LotjaGi2g1v0400200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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