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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0402000 |
| Transcript ID | LotjaGi2g1v0402000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Remorin family protein; TAIR: AT1G45207.3 Remorin family protein; Swiss-Prot: sp|Q7XII4|REM41_ORYSJ Remorin 4.1; TrEMBL-Plants: tr|A0A1J7G2M9|A0A1J7G2M9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0402000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89928766..89932520) extracted from Lotus japonicus Gifu genome v1.2.
TTTGCACTATGTGATGTAGATAACCATAAATCATTTTTTTGAGAAACATAGCATGTCAAATGCAAGGAAATGTTTTATTC AACACTGCATTATGTCTCCCAGCTCATGCCAATGTCTCAAACTCCTAGTAAAACCACAATCATACACTCATTATTTCCAC CGCAAAGCAATGGTTCTTCTCTTATCTTCATAAAATTGTTTCATTCATTGGGATTGGACTCATGTGAAATGTCCCAACCT ATAGTTGTCCACACATAACTGTTGGACATATCCTTACAATTAGGGACGGATGCAAGTGTTGAGGCATGAGGGCAAGTGCC CTCACTTGATTTTGCAAAATATCATTAGAAAAAAATTTGAGTAGCAAAAGTATGTAGTTTTTTATGGTCATTTGGTAAAA AATGCCCTCACTTGTGTCTCACATTACTAAATGCCATCACTTGTGTCCCACATTGCTATGTGCCCTCACTTGAGTAGTAA AAGTATGTGGTTTTTTATGCTCATTTAGTAAAAAGTGCTCTCACTTGTGTCACGTTTGATAAAAAATATTCTCACTTCTA ATAGTATATGTTAATTTTTTTATTACAAATTTATATTTATATATTGCTCTCACAACATTAAATTTCTGGATCCATCACTG CTTACAGTACTAATAGACAATAGTGGCAGAAAATGTCACTCAAAACTAACCATCTACCATTCCCACTAGACAAAGATTGA TGAAAATAATATTTGCAAATTTAACAACAAAATCATCAATTTCCTGATTTTATAGTATCTAATTTCAGCATTTGCTGCCA TATATAGACCACGTTTAAAACTCTTCTATTGTTTTGAGTTCATAATTAATTATCGGGAGAAGTTTTTATGTGTAGTTTTC GATTCCAGAATTGATTATGGAGTCATGAGCGGTAAAAATCTAATATAGTTTTATTTGTTGGGTACTAAGAATAAGTTTAT GTGCACATATGAAGTCAAACATATTTAAAAGCAGAACAGGATGTTACCTTATTCACAGTAACACAGTGCTTGCTTCCTCA GAGAGCTTTGGCAACTGAAAGGAGCTGCAAAACCAACAGTGTTATGAAGAAGAACTCTGGTTCCTCCCAGAAACTGGGTT CATTTCTAAGTCCAGGGGCACCAAGCAATAAAGAAAAAAGTGTAGAGAGCCAAAAGTGGTGGAGCTCAGAGAGGATGTTG CAACCAGCAAGCAGCAGTAGAAGACAGTCCAGTGTGGCTTCTTCTGGTTTAACACCCTTCAACAGTGGAAGAACAATACC TTCCAAATGGGATGATGCTGAGAGGTGGATTTGCAGCCCTGTTTCAAGCAGCTATGCTAATAACCAACATCAATTACCGC GGCGGCCGAAATCAAAAAGCGGTCCGATTGTGCCTCCCGGAGCAGGGTACTACTCGAATTACTCGCCTGCAATTCCGCTG AGACGCCAAAGTATGGTTGTGAAAAACTTAATGATGAGTTCACCTTTTTCAACAGGAGTTTTGGCACCAGATGCTCTTTC TCTTCACCATTATTATGCAGCACATGACACTGTTTTTAGTCCCCTTTATGATGATGATGATGATGATACTGACAATGAGA TACAATATTCTAGTTCTGAGCTCAACCAGAATGGTGTTGCTCTTCCATCAGTGTCTAGTGCACCCATGTGGTCAGAATTG CTTTGTGACCCTTCTTCACCTAACTTTCAAGGTATGCAGTTCTTGTCCAAAGGTAGAATAACAAAGATTACATTCCATAT TTCATTGAAGATGCTATCTATGTGTCCATGGATAAACCTTAGTGGATACATCATACTAATATTGACTGAGAACACCAATT CACTGTTGGGTAACAGCAAACTAATATTCCACTATGCACGAGGTCCAGGAAGGGACCGGACCCACTTTGCGGATCTAATG TAGACATAATTTGTGATCGTAAAATAACATAGCAACAATCTTCGGTTGCAGGCTCACACTCTATTAGGTAACAGCACAAT GTATAAATATTGGTTGATCATAGATCACTTGTTCAATTTGGCAATATAATGGAAGATGATTCCATAAAAGTGAGGACAGG ATTTTCTGTTTTTTGTGCATTCACCATGATGAATATGACCAATAATCATGTTAGTTCATGATTATTTGCATTCTAGAAAA GTTTCCACAGCCTAATGTGGTTCTTCTTCCATCATCCGACTATGTCTAACATTTGAGCATCAACATATTTAAAATGTTTC AGTTATTTTCATTTGCAGATGAGAAATGTAATGGAACTAAGAATGAGGAAACTGAGGTATCTCCTTTCTTAAGACGCGAT CAAGGTACCCAAATGAGCCTTCCAGAAACTGAGAATGATTCAGCACACTCGTCTGCAAAATCCTCCCCCAGTTTGGCCAT GAATCCAAAAAATTGTAATTCAAGTAAGTTAGAGGTCAGAGATGTGCAAGTAGACAATCAAGCTCCTGTTAATAAGTGGT CTAAGCAGAACCATCTACATGATGAAGACTTACAGAGAAGTAGTAAAGAAGCTCAAGCCTCAAGTTTGGATATTGCAGAG TCAACATTGGACATTTCCAAGTATGTTAGATAGTAGATAGATACCATCTTCTCTTTCTTCATATTTTTTTACCATTATTT TGTTTCATTAGGCTTGTTTTGCATCAATCTAATTGTCCTGATGTAGAATGAGTTTGTAGAATGCAATTATGCAAATGAAT CCCAAATTTACTGACATGCCTTTCATTGCCCAAAACCATCCTTAATTTGAAACTCTCCAATATTCATTCAGTGAGCAAAA ACAAAGAGTTATAATGTCATTGTTTTGTTTATGAATTTATTCATGAACACCATTATTTCGGAGCAGGTTTCACAGAGAGG AAGCCAAAATCATTGCTTGGGAGAGTTTGCAGAAGGCAAAGGCTGAAGCTGCAATACGAAAACTCGAGGTTTTAATTCAT CACAGTTTGTATTTGTGTATTGAACACTCTCATGTTTAGAAGGGGACAACAGTTTTACTACTTTTCTTGCAAGTTATAAC TTGTGAAAGTATGTTCATAGGATCATGCTGTGCAGAAAAACTCAGAAAATGTATATAATATATACAAAATAACTAAGTGC CTGTTTGAAAGCTTTTCTACAATTGATTCTGAAGTCAAAATCAATTTTGTGGAGAAGCTTCTTGTTTCAGAATTAAAACC TTTCTACAATTAAATAGCTTATTTTTTCTGATTATGGAAGCGTTTGACACAGATGAAATTGGAAAAGAAGAGATCCTCAT CAATGGATAAGATTCTAAAAAAGTTGAGAAGGGCTCAGATGAAAGCTGAAAAGATGAGAAGCTTAACACCTGTACAACAA CAGGGTCACAGGGTTTGCAAGACTTGGAAGGTATTTTCATTTCCCAAATGGTCTCCTAGCAGATGCTTCAGCAGCCATGC TCTGTGATCAGTACTATTTACAAGCTATGAAATCATCAAGATTTTTGTCCATGTAAACTCAATAGGAAAGATCATTTTTC AATCACATCCCCTTGTTTATTTAGCCTGCTGCACTTTCGATCTATATGTGAATACACAACATTGGCATTGCCATAATGCC ATTAGATTATTGGGCAGTGCATGACACAAAGAATAAAAGCCTTCCCTACATGTGTTACTTGTATGTCATTTTTGAATACG TTCTTTTCTTTCTTTGAATTCCTGTGTATTAAAAACACTCTTGTATAGTTTCCAAAATCATTTTTTTAAACATTA
CDS sequence (LotjaGi2g1v0402000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAAATGCAAGGAAATGTTTTATTCAACACTGCATTATGTCTCCCAGCTCATGCCAATGTCTCAAACTCCTAGTAAA ACCACAATCATACACTCATTATTTCCACCGCAAAGCAATGAGAGCTTTGGCAACTGAAAGGAGCTGCAAAACCAACAGTG TTATGAAGAAGAACTCTGGTTCCTCCCAGAAACTGGGTTCATTTCTAAGTCCAGGGGCACCAAGCAATAAAGAAAAAAGT GTAGAGAGCCAAAAGTGGTGGAGCTCAGAGAGGATGTTGCAACCAGCAAGCAGCAGTAGAAGACAGTCCAGTGTGGCTTC TTCTGGTTTAACACCCTTCAACAGTGGAAGAACAATACCTTCCAAATGGGATGATGCTGAGAGGTGGATTTGCAGCCCTG TTTCAAGCAGCTATGCTAATAACCAACATCAATTACCGCGGCGGCCGAAATCAAAAAGCGGTCCGATTGTGCCTCCCGGA GCAGGGTACTACTCGAATTACTCGCCTGCAATTCCGCTGAGACGCCAAAGTATGGTTGTGAAAAACTTAATGATGAGTTC ACCTTTTTCAACAGGAGTTTTGGCACCAGATGCTCTTTCTCTTCACCATTATTATGCAGCACATGACACTGTTTTTAGTC CCCTTTATGATGATGATGATGATGATACTGACAATGAGATACAATATTCTAGTTCTGAGCTCAACCAGAATGGTGTTGCT CTTCCATCAGTGTCTAGTGCACCCATGTGGTCAGAATTGCTTTGTGACCCTTCTTCACCTAACTTTCAAGATGAGAAATG TAATGGAACTAAGAATGAGGAAACTGAGGTATCTCCTTTCTTAAGACGCGATCAAGGTACCCAAATGAGCCTTCCAGAAA CTGAGAATGATTCAGCACACTCGTCTGCAAAATCCTCCCCCAGTTTGGCCATGAATCCAAAAAATTGTAATTCAAGTAAG TTAGAGGTCAGAGATGTGCAAGTAGACAATCAAGCTCCTGTTAATAAGTGGTCTAAGCAGAACCATCTACATGATGAAGA CTTACAGAGAAGTAGTAAAGAAGCTCAAGCCTCAAGTTTGGATATTGCAGAGTCAACATTGGACATTTCCAAGTTTCACA GAGAGGAAGCCAAAATCATTGCTTGGGAGAGTTTGCAGAAGGCAAAGGCTGAAGCTGCAATACGAAAACTCGAGATGAAA TTGGAAAAGAAGAGATCCTCATCAATGGATAAGATTCTAAAAAAGTTGAGAAGGGCTCAGATGAAAGCTGAAAAGATGAG AAGCTTAACACCTGTACAACAACAGGGTCACAGGGTTTGCAAGACTTGGAAGGTATTTTCATTTCCCAAATGGTCTCCTA GCAGATGCTTCAGCAGCCATGCTCTGTGA
Protein sequence (LotjaGi2g1v0402000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNARKCFIQHCIMSPSSCQCLKLLVKPQSYTHYFHRKAMRALATERSCKTNSVMKKNSGSSQKLGSFLSPGAPSNKEKS VESQKWWSSERMLQPASSSRRQSSVASSGLTPFNSGRTIPSKWDDAERWICSPVSSSYANNQHQLPRRPKSKSGPIVPPG AGYYSNYSPAIPLRRQSMVVKNLMMSSPFSTGVLAPDALSLHHYYAAHDTVFSPLYDDDDDDTDNEIQYSSSELNQNGVA LPSVSSAPMWSELLCDPSSPNFQDEKCNGTKNEETEVSPFLRRDQGTQMSLPETENDSAHSSAKSSPSLAMNPKNCNSSK LEVRDVQVDNQAPVNKWSKQNHLHDEDLQRSSKEAQASSLDIAESTLDISKFHREEAKIIAWESLQKAKAEAAIRKLEMK LEKKRSSSMDKILKKLRRAQMKAEKMRSLTPVQQQGHRVCKTWKVFSFPKWSPSRCFSSHAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 47 | 118 | 72 | - | – | |
| MobiDBLite | 47 | 119 | 73 | - | – | |
| PANTHER | 55 | 459 | 405 | 1.4E-141 | – | |
| PANTHER | 55 | 459 | 405 | 1.4E-141 | – | |
| MobiDBLite | 261 | 316 | 56 | - | – | |
| MobiDBLite | 281 | 316 | 36 | - | – | |
| MobiDBLite | 333 | 359 | 27 | - | – | |
| Pfam | 353 | 434 | 82 | 4.2E-19 | ||
| Coils | 387 | 407 | 21 | - | – | |
| Coils | 409 | 429 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0402000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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