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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0402100 |
| Transcript ID | LotjaGi2g1v0402100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT5G67060.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FHA7|HEC1_ARATH Transcription factor HEC1; TrEMBL-Plants: tr|C6TJ68|C6TJ68_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0402100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89951127..89952184) extracted from Lotus japonicus Gifu genome v1.2.
CCCAGCACTCTCAGCTCTAACTATTTTATTCTTCTTATCTCTCTGCTGCTGCAAATAGCCCTATACTTTCACAGCTCTTA CCTGCTTCAATCCTCACCCATCCCATACTCTGGTTCTTCTTCTTCCTTCCATTTCCCTGCTTCTTCTACTTACTTCCATT TCCATACCATTCCTCCCTGTCTCTCTTTCTCTGACGCCAGTGTGAAACTCATGGACATTGATATATTCAAAACCTCTGCG AATGATGGTAGCAGCATGGACATGATGGTAATGATGGAAAAGTTCCCTGAATTATGTGAACCTTTTTATAACACACTCAA CTTTGACTCAAATGTAACTACGCCTTCTTTGATTAACCCACCACCACCTTCATCTGCTAATTTCATCAACAACATTCCTC TGCAACAACACATGACTCTGCCTTTTCAATCCAACGAGAAGAAAAATTCTATGGCCGCTATGAGAGAGATGATTTTTCGA GTAGCAGTGATGCAGCCTGTTCAAATAGACCCGGAGTCCATCAAGCCACCAAAGAGGAAGAATGTGAAGATTTCCAAGGA TCCTCAGAGCGTGGCGGCGAGGCATAGAAGGGAAAGGATAAGCGAGAGGATAAGGATCCTGCAGAGATTAGTCCCTGGAG GAACGAAAATGGACACGGCTTCTATGTTGGATGAAGCTATACATTACATGAAGTTCTTGAAGAAACAAGTGCAGACTCTG CAGCAGGCAGGGACAAGTAGAAACTTCCAAGGAGTGTCTAACGCCAGTGTCAATTATTCTGCTGCTTTGATGAGGGGTTG CTAGCCTTGTCAAATGATGGATTCTCCTTCTACACAAATGCTCAGTTGAGAAGAAATTTAGTCAAGGATTTAATTTGCTT GATATGTGCATGAAAACCAATGAATTTATTCTGTACTGTACAATGTTGATGCATGGTTTGGTTTGGTGGTCATGGAATTG TGAAGACAGTGTTTGTCACTTTTATTGTCATTGTTTTGAGAAATTAATTATCTTACATTTTCAACATAAAATGAGAAGAA AAACTTGGTAATGAAAGC
CDS sequence (LotjaGi2g1v0402100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACATTGATATATTCAAAACCTCTGCGAATGATGGTAGCAGCATGGACATGATGGTAATGATGGAAAAGTTCCCTGA ATTATGTGAACCTTTTTATAACACACTCAACTTTGACTCAAATGTAACTACGCCTTCTTTGATTAACCCACCACCACCTT CATCTGCTAATTTCATCAACAACATTCCTCTGCAACAACACATGACTCTGCCTTTTCAATCCAACGAGAAGAAAAATTCT ATGGCCGCTATGAGAGAGATGATTTTTCGAGTAGCAGTGATGCAGCCTGTTCAAATAGACCCGGAGTCCATCAAGCCACC AAAGAGGAAGAATGTGAAGATTTCCAAGGATCCTCAGAGCGTGGCGGCGAGGCATAGAAGGGAAAGGATAAGCGAGAGGA TAAGGATCCTGCAGAGATTAGTCCCTGGAGGAACGAAAATGGACACGGCTTCTATGTTGGATGAAGCTATACATTACATG AAGTTCTTGAAGAAACAAGTGCAGACTCTGCAGCAGGCAGGGACAAGTAGAAACTTCCAAGGAGTGTCTAACGCCAGTGT CAATTATTCTGCTGCTTTGATGAGGGGTTGCTAG
Protein sequence (LotjaGi2g1v0402100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDIDIFKTSANDGSSMDMMVMMEKFPELCEPFYNTLNFDSNVTTPSLINPPPPSSANFINNIPLQQHMTLPFQSNEKKNS MAAMREMIFRVAVMQPVQIDPESIKPPKRKNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYM KFLKKQVQTLQQAGTSRNFQGVSNASVNYSAALMRGC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 41 | 41 | 2.4E-87 | – | |
| PANTHER | 1 | 41 | 41 | 2.4E-87 | – | |
| PANTHER | 40 | 184 | 145 | 2.4E-87 | – | |
| PANTHER | 40 | 184 | 145 | 2.4E-87 | – | |
| Gene3D | 109 | 175 | 67 | 2.8E-12 | ||
| ProSiteProfiles | 114 | 163 | 50 | 15.478 | ||
| SUPERFAMILY | 118 | 175 | 58 | 6.94E-15 | ||
| SMART | 120 | 169 | 50 | 6.8E-14 | ||
| Pfam | 124 | 163 | 40 | 2.4E-7 | ||
| CDD | 137 | 168 | 32 | 1.67741E-6 | ||
| Coils | 153 | 173 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi2g1v0402100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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