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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0402900 |
| Transcript ID | LotjaGi2g1v0402900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT4G36930.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FUA4|SPT_ARATH Transcription factor SPATULA; TrEMBL-Plants: tr|A0A151TIE6|A0A151TIE6_CAJCA Transcription factor SPATULA; Found in the gene: LotjaGi2g1v0402900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90031023..90033989) extracted from Lotus japonicus Gifu genome v1.2.
AAACTAGTAGCAATATAGCATGATAGAAGCATAGTCCTTCATTTTCCATTTGTTTGTGAAGAAACTAGTTGTTGTATACT TGTATTTGCATTGCCAATTACTCCTATCACCGCACGGAAACCACTCCAACCGTTTCTTTCTCTCTCTCTCTGGAACCAAC TTTTTCTTCTCTCGTAACTCTCAACCATTAACCACTCTCTTCCCCATTCTCATTATTATTATTCACACCACCCTCTCCAC CTCCAACTTCAACAATGGCAGAGGAAGATAGCTACAACCTCTCTTCTTCTTCCTCACAGGACGAAATCTCCCTTTTCCTC CGTCAGATTCTTCTCCGTTCATCATCCAACCCCAACATGCCTCCATCCTCCAACTCACCCCTTCATACCACCGCCGGAGC CTATCTCTCCGCTTCATCTCAGCCTCTGCCTGCTGCAAATGTCTCTTCCTCCTCTCTAGGTGTCAGTGAGAATGAGGCTG ATGAATATGACTGTGAAAGTGAGGTATTACTTCCTTCTCTTCATACTTTCTTTACCCTTTTCTCTGCATCTCCTTCACTG TGAAGATAATGTAAGATGAAACTGGTGGCCTAAAAAAAATGTTATTTTATTTTCTGGGTATGTTACTGGTTTGGATCTTT GTAAAATTGGTGCTAAAAAGGGAGGATTTTTCTGCTTTTTTTCTTTCTTTCTGGATTTGATTTGAAGTGAAAAGCTATGT TCATTTTTGAGGTACAAGTGTTTGATGATTTTTTTCTGAATGAAGGAGGGTGTTGAAGCATTGGGTGAAGAGGTTAGGAC AAAGTCTCTTCCTTCTTCTAGGAGCTCATCTAAAAGGACTAGAGCAGCAGAGGTTCATAATTTGTCTGAAAAGGTTTGTG ATTTTTTTGTTCATGGATGTTTGTGGTAATTGGGTTTGGTTTTATTCATGCTTATGTGATTTTTCTGTGTCTCTGGGGCT TGTTTGGCAGAGGAGAAGGAGCAGGATCAACGAGAAGATGAAGGCTTTGCAAAATCTGATTCCAAACTCTAACAAGGTAC ATGAGTTTCTTCAACCTTGGTAAGAATGGGTGTGTTTTGTGATTCATGGTTAGTCTTATTGTGGTGTGTTGTGTTTGTGT GTGCAGACTGATAAGGCTTCCATGCTTGATGAAGCTATTGATTACCTTAAACAGCTTCAGCTCCAAGTACAAGTCTGTAT CTCTTTTCTATGGTTATATTTTTGTCCTGTCTGGGGGAGGCTGTGAGATTCATTTTCTCCTGTTCATTCTAACTTGAATT GGAATTTTCATGAAGTTGCTAGTTCATGAGTTTTGATGTTCTGACTTCTAATTATTTGTATCCTTCTTTTCTCTTATTCT TTTCCTGTGTACAACAGTATATGAATGGGAAACTGACAATATTGGAAAATTTGAGAAAAGCCTTTCTGGAACTGTTTGTC TTTAGGCCAAACATAACTGATATTCTTTTTTATGCTGAAGCCTGTAGCAAAGTAATCAATGTTGATTCTGCTTATAGCTA AAAGTTTTAGTTTCCAAAGCATTACTAACATTTGAAGTGCCATTGTTTATCTTTGCTAATGCACAAACCCACATAATTCT CCAGTAGTTTCTTTTTATTGCTCTTTGCATATATATGTAAGCCTCAAGTGACTTGTATGTTGAATTTTGATGAAGATATC TTGAATGAACTATAAGTAGCAACTGACATGGAGTATTAGTGGGATAAAAAACATGTGTGAAGATTCATTTTTGTTACTCA AAGTAAAAGGAAACCTTCACTGAATGCAGCACTACAACTAAATCTTGTGATATAATATTTCAGATGCTGTCAATGAGAAA TGGATTGAGTTTGCATCCTATGTGCTTCTCTGAAGGCTTGCAGCCTCTGCAATTGTCTCGGATGAGTATGGATTCAAGTG AAGGAAACAAGTCTACCCTTTTAAACATGACTACTACTCTGCCTCTGCAACAAGAGAACCCCTTGCACTATGCATCATCC AATCTCAATCTACCTAGCAAACAAGTTTTGCCAAATAAGCCATCAGCGTCCCATCATTCATTTGTTAACAACTTGGAAAC TTCTTTCTGGCAGGAACCGCAAATCCTGGCACCGCACAGAGGATCTTCCGAGGTAAGCTCAGCCATGTGGGATGCCATAC TTAGTTAAAAATTTAAATTCTAGTCATTGTTAAGTGTTCTTTTCGCTTGAATTGTAAAGGCAATACATGGGGAAGTCATA TGGCAGCACCAGCAATCAAATGCAATCCATTCAGATACCAATCCAATAGGTGGTTCTCAAGGTGCGGCACATGTTTCTTA CAAATTACAATTCGATGCAACTATTTCATTACTATGAAAAAATCTCATCCTCTTCACCCTTTTTCCAATCCTCAGGTGTA AAAGAATTGGAGGCAGACATATTACCTACCGTGTCACTTTCATTTGGGATGCGAACTTCTGACCCTGAGGACAACAACCC CTTGCAACCATGCATTGCGGGAAGAGATCAGTCAGGAGTGATCATAAGAAGTAGCGAGCCTAACATAATTCTTACATCAC AGTGAAGTAGGTAAATGGCACATGATGCTTAAGAAAGCATTTCACATATATCTTGATGCATGCAACATGTCTGCAGAAGG GGATTTGTAACTTGAGGACAGGGAGATCAGATTTTTGAAGTTTGCCAGACCTCCTATACTTTTTGAATTTCAGTTTCCTC ATCAGCGTAGGAAACCTTTTTGTGGTGTAGCCTATGGCCTATGTGACATGAGAGCAGCACCCAGCTTCTCAAGTTGATAA ATTATCTATTATCTATATGTTTGTGATTAGTGATTACTGATTACCTCTGTAGAACATTGAAGGAACGTTTTCCAAATGTG CACTGTGTAGTGTATGCAGAGATAGATAACTGCAGGTATATAAGTACAACGACTGTAGAATCTACTATGATAATGAAAAA CGCACCA
CDS sequence (LotjaGi2g1v0402900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAGGAAGATAGCTACAACCTCTCTTCTTCTTCCTCACAGGACGAAATCTCCCTTTTCCTCCGTCAGATTCTTCT CCGTTCATCATCCAACCCCAACATGCCTCCATCCTCCAACTCACCCCTTCATACCACCGCCGGAGCCTATCTCTCCGCTT CATCTCAGCCTCTGCCTGCTGCAAATGTCTCTTCCTCCTCTCTAGGTGTCAGTGAGAATGAGGCTGATGAATATGACTGT GAAAGTGAGGGTGTTGAAGCATTGGGTGAAGAGGTTAGGACAAAGTCTCTTCCTTCTTCTAGGAGCTCATCTAAAAGGAC TAGAGCAGCAGAGGTTCATAATTTGTCTGAAAAGAGGAGAAGGAGCAGGATCAACGAGAAGATGAAGGCTTTGCAAAATC TGATTCCAAACTCTAACAAGACTGATAAGGCTTCCATGCTTGATGAAGCTATTGATTACCTTAAACAGCTTCAGCTCCAA ATGCTGTCAATGAGAAATGGATTGAGTTTGCATCCTATGTGCTTCTCTGAAGGCTTGCAGCCTCTGCAATTGTCTCGGAT GAGTATGGATTCAAGTGAAGGAAACAAGTCTACCCTTTTAAACATGACTACTACTCTGCCTCTGCAACAAGAGAACCCCT TGCACTATGCATCATCCAATCTCAATCTACCTAGCAAACAAGTTTTGCCAAATAAGCCATCAGCGTCCCATCATTCATTT GTTAACAACTTGGAAACTTCTTTCTGGCAGGAACCGCAAATCCTGGCACCGCACAGAGGATCTTCCGAGGCAATACATGG GGAAGTCATATGGCAGCACCAGCAATCAAATGCAATCCATTCAGATACCAATCCAATAGGTGGTTCTCAAGGTGTAAAAG AATTGGAGGCAGACATATTACCTACCGTGTCACTTTCATTTGGGATGCGAACTTCTGACCCTGAGGACAACAACCCCTTG CAACCATGCATTGCGGGAAGAGATCAGTCAGGAGTGATCATAAGAAGTAGCGAGCCTAACATAATTCTTACATCACAGTG A
Protein sequence (LotjaGi2g1v0402900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEEDSYNLSSSSSQDEISLFLRQILLRSSSNPNMPPSSNSPLHTTAGAYLSASSQPLPAANVSSSSLGVSENEADEYDC ESEGVEALGEEVRTKSLPSSRSSSKRTRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIDYLKQLQLQ MLSMRNGLSLHPMCFSEGLQPLQLSRMSMDSSEGNKSTLLNMTTTLPLQQENPLHYASSNLNLPSKQVLPNKPSASHHSF VNNLETSFWQEPQILAPHRGSSEAIHGEVIWQHQQSNAIHSDTNPIGGSQGVKELEADILPTVSLSFGMRTSDPEDNNPL QPCIAGRDQSGVIIRSSEPNIILTSQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 29 | 49 | 21 | - | – | |
| PANTHER | 54 | 306 | 253 | 6.3E-115 | – | |
| PANTHER | 54 | 306 | 253 | 6.3E-115 | – | |
| MobiDBLite | 57 | 72 | 16 | - | – | |
| MobiDBLite | 57 | 76 | 20 | - | – | |
| MobiDBLite | 84 | 120 | 37 | - | – | |
| Gene3D | 103 | 166 | 64 | 3.5E-19 | ||
| SUPERFAMILY | 105 | 169 | 65 | 7.85E-19 | ||
| MobiDBLite | 106 | 120 | 15 | - | – | |
| ProSiteProfiles | 108 | 157 | 50 | 17.962 | ||
| CDD | 111 | 160 | 50 | 2.59683E-16 | ||
| Pfam | 112 | 158 | 47 | 3.1E-14 | ||
| SMART | 114 | 163 | 50 | 7.7E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi2g1v0402900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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