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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0403600 |
| Transcript ID | LotjaGi2g1v0403600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AP2-like ethylene-responsive transcription factor; TAIR: AT4G36920.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|P47927|AP2_ARATH Floral homeotic protein APETALA 2; TrEMBL-Plants: tr|V7CHF0|V7CHF0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0403600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90077146..90081242) extracted from Lotus japonicus Gifu genome v1.2.
CTCACATCGTTCTTTAAACACGAGGTCAAAAGTTCGATCGTTGTGACTAGTCGTTAACTGCTTAGTACAATACACTTGAT GAGATATTTAGTTACTACTGTCAGCAGTGGATACCCGAGAGCTAAGCTAGGTGAAAGTGGCCTCGTGTATGCTGAATTGG GCAGTTAGGGGAATTCAAAGATCTTTGATCAGCTTCCTTCTTTATTAGCACCTTTTTCCAACATCTCACTCTCTCTCTCT CACTCGTCGTAGGTTTGGTTTTTTCTTTCCTCTCTCTTTCTCACACACACAGTTCTGAACATTTCTCAGCAACTAGCTTC TCTTTTTCCTTATCTCCATTATTTTATTCTCAGGCAGAGAACCCAAGACAAAGAGTGTTGGCATACACAGTAGGGAGCAA CAACACAACAACAGAGTTCAATTGTTTCTTCTTCCTCCCTTTTTTCTTGGTTTGAGAGATGTGAAGAATCAGAAATCTGG ATGATTGATTGATTCATTGAGCTGAAAATTCTGAGTGATTTGTTTGTTGTTGATATCAGAGAAGTGAAGAAGAATAAGAA GAAGAAGAATGTGGGATCTGAATGGCTCCCCTGTTAAGAGAAAAGATTCAGAATCAGAGGAGTGTTCGAATTCGTTTAAG AGGCTTGGATCTCTTTCCAATTCAAGCTCCTCTGCGGTGGTCGTTGAAGACGGATCGGAAGTTGAAGAAGACGGTGGCGC CGGAGCTGAACTGGTCGGCAGAAGAAACAAGATATTCGGATTCTCTGTCACCCATGATGATGATAACGAGCCCATGGATA CTGACAACCCGCCGGTGACCCGCCAGTTTTTTCCGGTGGAGGGGGCGGACACGGCGACGGCGACACCCTCCGGTGGTGGT GGTGGAAGCTCTTCTTCCTTCCCTCGTGCTCACTGGGTAGGAGTTAAATTCTGTCAATCGGAAGCTCCCGGTGCCGGAAA CGGAAAATCAGTTGAAGTGTCGCAGCCGTTGAAGAAGAGTCGCCGAGGACCAAGGTCGCGTAGCTCACAGTATAGAGGAG TTACTTTTTACAGAAGAACTGGTCGATGGGAGTCTCACATATGGTTAGTACTTTGTATCTTCAATCCTGAAATTCATTAC TAGTTTTCTCAACACTGAAATTTTATGGTTCTGCTTGTTTGTTTGTTCTTCAGGGATTGTGGAAAACAAGTGTATCTGGG TAAGTGAGTAGTTAATTATATTTATTTTTTGTTGAATGATTATAGTTTGTGATGGTTATGATTTGGGAGACAGAGAAGAG GGTGTTATTATTATGGGGGAAATTTTCAGGGATGACTGATGAGAAAGTTTTGTCTGGGTGGTTTTTGTGTAGGTGGATTT GACACTGCACATGCTGCTGCTCGGTGAGCACTTGCTTTCTCTCTCTTTCCCTCCTTCTTTGCTCAGTTTATGATATTACT TTTCTGTATCTCCAAGCAAATCCATATAAAAATCCATTTTAGGAAATATAAGGTTGTGTTCATTCATCTATGTTTGCCCA GAGCATATGATAGAGCTGCCATTAAGTTCCGGGGAGTAGAGGCTGACATAAACTTCAACATTGAAGACTATGAAGATGAC TTGAAGCAGGTGAGAGAGATTCTGTGGATGGAAAACTCATGGTGAGGCCAAAATTATGGTTGACACTAAGGGAAAATGCT TCTGTTCAGGGTGATTTTGGCCTCAACTTGGTTTTCCACTATATATATTCAAACATATACTTCATTAATTTTTCCATGTT GAATTGTGATTGTTATCTGGTTCAATGCTATGTTAATAGATGAGTAATCTAACTAAGGAAGAGTTTGTGCACGTACTTCG CCGGCAAAGCACGGGATGTCCGAGAGGAAGCTCCAAGTATAGAGGTGTAACTTTGCATAAGTGTGGAAGATGGGAGGCTA GAATGGGCCAATTTTTAGGCAAAAAGTAGGTTCTAGTTATAATTTTCTACTTCTGTTCTTTGACCTGAACTTCATGTATG TTTATTTATGCCATAAAATTTGATTTCATTCACCAGGTATGTTTATCTGGGTCTGTTTGACACTGAGGTTGAAGCTGCAA GGTATGTGCTTTGCTTCTTGCTAGTTAAAAGTATCCATGAATCTAAATGCTTGCTAGGGTTTTGAACTTTTTTGGTCACA TTTTGTATATAGGGCATATGACAAGGCAGCAATAAAATCTAATGGCAAAGAGGCCGTCACCAATTTCGACCCAAGCATCT ATGATAATGAGCTCAATTCTGGTATGAAATGAACTGTAAGATTTATATGCACTGAAGTGTTTATATTTTACTAATCACAA TCACAGCTACTAATTGAAGTTATTAATTGTTGGGTGGCAGAATCCTCGGGCAAACCTGCTGATCATAATCTGGATTTGAG TTTGGGTAATTCAGGCTCTAATAAGCATAGCAATGGTCAAGCATTGGGGAATCACGCCCCAAATACTGCGAATGATCAGC ATCTGCCACCACCAGAATCTCAGTGGCGAAATGGGGGAAACAAGGCTAAGGTTAGTATGATACAACTTAACATTTTGTTA TTTGCTGATTAGTGCACTTAATTTTTCTTTTGAATTCTACCTGAATCAATCACCCTGGCCTTTGTGTTCAGCTGGTGAAT ATACTACCAAAACCATGTAGTATAAGCAACATGGAAGGCTATGTAAATGGACACGGAGAGAGTGAAGCCTCATGGCTTCT AAGCCAAACTCACCTCCAATCTCCACCCACCAATGCAATTCACAGATATGGTCCATATAGATCACCAGGAGAGCCTCAAT TTCTTCACAATTTTGCACACCTTCACCCCCAAAATTTTCATGTGAGTACCTCTTCAATTAATTTCTCTTTTAGCTAATTT ATTAATTGTATATATAAATGAGAGATGAATCAGGAAGCATCCTTCTTGTTAATTAGGATCCATGTTGAATTTAATTAGGG CATGTTCATAAATCTTGTCATGATTGAGTTCGAAGTCAGAAGCGGCAACGCTTCTTGCTTCTTGATTTGAGAATTGATTC TGAAGAAAAAGAAGTTGATCCAGATATAATTTGTTGTGTATTATGTAGGTTCCGAGCAGCAGCAGCAATGGAGGCCGAAT TGGAAGTGATCTTTCACTATCAATGTCCGATCAGCAACAGCAACAGCAACAGTGGCAAATGGGACCTCCACATTTGTTAG CAACTGCTGCAGCATCATCAGGATTCCCACCACAGATAAGACCATCCCAAGTTTGGCTGCACAAAAATGGATTCCACCCT CTCATGAGACCCTCTTAAGAAAATCACTCAATTTGTTCCCATTGAAATAATCTTCTTTTTGTGAGCATGTACAAATGGAA GCACAACATAGAGAAAGTCAAAAACCATAACTTTACTATTGAGGTGAAAGAGTGAAAAGGGGAAAAGCTATGGGAACTCT CATTTGTCTTGATCTGGGTCAGTCAAACTAACAAACCGACGAAATCTTTTAACCAGAGATACTAGATATTCATCAGGGCT AGCTAGCTCTGACTAAATTTTTCTGATCTTTTATATATAAACTATGATTTATTTGTTGCATTTTTCTGTGTTATGGTATT TATGACACCACCTATACGTTTCTTGATTTGGGATGCATAGCTATCACAAACACGTGGTTGTCAATTCGTTCCTTATATAA AGATGCTATATCATATGCTAGCTTTCAAGCTTTGGTTCATTAATTAATAGGGCGATTCATCAGGTTATTTTAGCTTCACG AAAAATATTGAGACAAAATATACAGTACTGTTATATATAGTTATAGTGTACATCTAGCTAGCTATTAAAAATGAAAATTA GAAAAAGAAATGAAGAAGAGTTTTTTGTGATGTGGGATGCAAAGTGGGTGAATTTGTGGGAAATGTGAAAGCATGGTGAT GAATAGTCTCTATCAAGATTGAAGGGTGTCCTTTGAATCAGTTCTCTTGGCCAAAAGCAGTCAGACAAAGGCTACTATTA TGACGAGAGAGACCTATCACAAGGCTCCATAAGGACACTGAAGAGAGGGGAAAAAGAGGAAGGGATCAAAAGGGTATAAA TGGCAAGGGGCTTGTGG
CDS sequence (LotjaGi2g1v0403600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGGATCTGAATGGCTCCCCTGTTAAGAGAAAAGATTCAGAATCAGAGGAGTGTTCGAATTCGTTTAAGAGGCTTGG ATCTCTTTCCAATTCAAGCTCCTCTGCGGTGGTCGTTGAAGACGGATCGGAAGTTGAAGAAGACGGTGGCGCCGGAGCTG AACTGGTCGGCAGAAGAAACAAGATATTCGGATTCTCTGTCACCCATGATGATGATAACGAGCCCATGGATACTGACAAC CCGCCGGTGACCCGCCAGTTTTTTCCGGTGGAGGGGGCGGACACGGCGACGGCGACACCCTCCGGTGGTGGTGGTGGAAG CTCTTCTTCCTTCCCTCGTGCTCACTGGGTAGGAGTTAAATTCTGTCAATCGGAAGCTCCCGGTGCCGGAAACGGAAAAT CAGTTGAAGTGTCGCAGCCGTTGAAGAAGAGTCGCCGAGGACCAAGGTCGCGTAGCTCACAGTATAGAGGAGTTACTTTT TACAGAAGAACTGGTCGATGGGAGTCTCACATATGGGATTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACTGCACA TGCTGCTGCTCGAGCATATGATAGAGCTGCCATTAAGTTCCGGGGAGTAGAGGCTGACATAAACTTCAACATTGAAGACT ATGAAGATGACTTGAAGCAGATGAGTAATCTAACTAAGGAAGAGTTTGTGCACGTACTTCGCCGGCAAAGCACGGGATGT CCGAGAGGAAGCTCCAAGTATAGAGGTGTAACTTTGCATAAGTGTGGAAGATGGGAGGCTAGAATGGGCCAATTTTTAGG CAAAAAGTATGTTTATCTGGGTCTGTTTGACACTGAGGTTGAAGCTGCAAGGGCATATGACAAGGCAGCAATAAAATCTA ATGGCAAAGAGGCCGTCACCAATTTCGACCCAAGCATCTATGATAATGAGCTCAATTCTGAATCCTCGGGCAAACCTGCT GATCATAATCTGGATTTGAGTTTGGGTAATTCAGGCTCTAATAAGCATAGCAATGGTCAAGCATTGGGGAATCACGCCCC AAATACTGCGAATGATCAGCATCTGCCACCACCAGAATCTCAGTGGCGAAATGGGGGAAACAAGGCTAAGCTGGTGAATA TACTACCAAAACCATGTAGTATAAGCAACATGGAAGGCTATGTAAATGGACACGGAGAGAGTGAAGCCTCATGGCTTCTA AGCCAAACTCACCTCCAATCTCCACCCACCAATGCAATTCACAGATATGGTCCATATAGATCACCAGGAGAGCCTCAATT TCTTCACAATTTTGCACACCTTCACCCCCAAAATTTTCATGTTCCGAGCAGCAGCAGCAATGGAGGCCGAATTGGAAGTG ATCTTTCACTATCAATGTCCGATCAGCAACAGCAACAGCAACAGTGGCAAATGGGACCTCCACATTTGTTAGCAACTGCT GCAGCATCATCAGGATTCCCACCACAGATAAGACCATCCCAAGTTTGGCTGCACAAAAATGGATTCCACCCTCTCATGAG ACCCTCTTAA
Protein sequence (LotjaGi2g1v0403600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWDLNGSPVKRKDSESEECSNSFKRLGSLSNSSSSAVVVEDGSEVEEDGGAGAELVGRRNKIFGFSVTHDDDNEPMDTDN PPVTRQFFPVEGADTATATPSGGGGGSSSSFPRAHWVGVKFCQSEAPGAGNGKSVEVSQPLKKSRRGPRSRSSQYRGVTF YRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEDDLKQMSNLTKEEFVHVLRRQSTGC PRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKSNGKEAVTNFDPSIYDNELNSESSGKPA DHNLDLSLGNSGSNKHSNGQALGNHAPNTANDQHLPPPESQWRNGGNKAKLVNILPKPCSISNMEGYVNGHGESEASWLL SQTHLQSPPTNAIHRYGPYRSPGEPQFLHNFAHLHPQNFHVPSSSSNGGRIGSDLSLSMSDQQQQQQQWQMGPPHLLATA AASSGFPPQIRPSQVWLHKNGFHPLMRPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| MobiDBLite | 1 | 87 | 87 | - | – | |
| PANTHER | 2 | 507 | 506 | 5.7E-187 | – | |
| PANTHER | 2 | 507 | 506 | 5.7E-187 | – | |
| MobiDBLite | 21 | 39 | 19 | - | – | |
| MobiDBLite | 64 | 78 | 15 | - | – | |
| MobiDBLite | 128 | 154 | 27 | - | – | |
| Gene3D | 153 | 212 | 60 | 4.4E-19 | ||
| SUPERFAMILY | 153 | 211 | 59 | 9.81E-16 | ||
| Pfam | 153 | 202 | 50 | 7.9E-9 | ||
| CDD | 154 | 211 | 58 | 8.2077E-12 | ||
| ProSiteProfiles | 154 | 210 | 57 | 17.596 | ||
| SMART | 154 | 216 | 63 | 2.0E-31 | ||
| SUPERFAMILY | 245 | 305 | 61 | 1.05E-16 | ||
| Gene3D | 245 | 305 | 61 | 6.2E-18 | ||
| CDD | 245 | 305 | 61 | 4.04238E-25 | ||
| Pfam | 245 | 292 | 48 | 1.4E-8 | ||
| SMART | 246 | 309 | 64 | 3.3E-30 | ||
| ProSiteProfiles | 246 | 303 | 58 | 15.475 | ||
| PRINTS | 247 | 258 | 12 | 7.0E-6 | ||
| PRINTS | 285 | 305 | 21 | 7.0E-6 | ||
| MobiDBLite | 310 | 366 | 57 | - | – | |
| MobiDBLite | 310 | 360 | 51 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0403600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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