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LotjaGi2g1v0403800.1

Overview

Field Value
Gene ID LotjaGi2g1v0403800
Transcript ID LotjaGi2g1v0403800.1
Lotus japonicus genome version Gifu v1.2
Description Ethylene-responsive transcription factor; TAIR: AT2G23340.1 DREB and EAR motif protein 3; Swiss-Prot: sp|O22174|ERF08_ARATH Ethylene-responsive transcription factor ERF008; TrEMBL-Plants: tr|A0A140WWF6|A0A140WWF6_LOTCO AP2/ERF; Found in the gene: LotjaGi2g1v0403800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:90099808..90101351) extracted from Lotus japonicus Gifu genome v1.2.

CTGATTTCATAAGTGAGTTCGATTCTATTTCTTTTGAGAAAAATTATGTTTAGTGCAGATTGAAAATAGCTCGTAGTTAT AAAATGACCGTTTTTAAACATAATTTTTCTGAGGAAACATTAAAATCAAACTCGCTTACGAAATTCGGGACTAATATTAG TATGAGCCCAAGAATAAATATAAAAGGAAGATAGAGGAGGTGGGGTTTGAAAGAAAGAAACCAACGTGGAGGCTTACCCA GATGACAAACCTTAGTGGGTGAGTCCTCGCTCGCATGAATGAACCATTCATCTTCAATTCTTCAATCCAAAAATCCATTC CTTCTTTCCCATTTAACAACCCCTTTTTCTTAGATTTTTCATTTTTCTTCAACTTTCTTTCTCTCTCTTGATTCTGACCT CTGAAACAAACCAGGGAGAGAAGGAAGAAGAAGATGAAGGGTGAAGGAGGAGGAGGGAAGAGAGGTGGTGGTGGTGTGGA AGGTGGTGCTGAGAGAAGGTACAAAGGAATCAGGATGAGGAAGTGGGGGAAGTGGGTTGCTGAAATCAGAGAACCAAACA AGCGTTCCAGGATTTGGCTCGGTTCATACTCCACCCCTGTCGCCGCCGCCAGAGCCTACGACACCGCCGTTTTCTACCTC CGGGGACCCTCCGCGCGCCTCAACTTCCCGGAGCTTCTTGCCGGAGAACGCGCCGCCTTCGTTGGCGGCGACTGCGATAT GTCGGCAGCTTTTATCAGGAAGAAAGCGACAGAGGTCGGTGCCAGAGTCGATGCTCTCCAGTCGGCAACTCTTCCCCTTC CCCACCACAACCACCACCCTCGTGCGGCGCCGGTGCCGGAGCTTCTCATAGGCGGTGGAGGCGGCGGGTCTGGAGATTTT GCGGAGCGGGTTGACCTGAATAAATTACCAGAACCCGAGAGTTCGGATGAATGGGATGTGAGCTGAGAAGAAAGTGAAAT GATGCTGTCTTTTTTTTCTGGGTCGGTGGTGGTTGCTAACATGCGCCATGGAGGTTACATGACGGCTGAAGCAAATTGAT CTTTGTTGATGAGGCCTTTGATGTTGGTGTTACTGTTATGGATTACTGTACTGTATCTCTTCCTTCTTTTCTTTTCTCTT TTTTTTTTTAGATTTTACAGGAGAAATTTTGGCGTTGTAAAATTGTTTAAATGTAAATTAACTAGTATCTATTAGTAGAA TCTTTTTCTTCTTAGTTTTTGTTGTGGCTTTAGTTTAGTTATCTTCATGTTTCAACAAGAGGCAGATGATAAATTCCTTA GCTTCTGTTCCTTTGATTCTGATGGTGTTTTTTTTTATTTGTTGAAAAAGCTTCCATTTATGTCTTTTATGTGAAGAAAG TCGGTGGAAAATAGGAATTTTTGGGATGAAAGCTAAGATGGTATAGTCAGAAAGGAAAAGAATGTGGGAGTGAAGGGAAA TGGATGGAGGAAGGAGACAGGAATGGCCTACGGTGGCCAGCAGTTGGGTGGAAAAGTGAGAGGGAACCATGCTAACCACT AAAGTAATAATAATAACTTCTAAA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0403800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGGGTGAAGGAGGAGGAGGGAAGAGAGGTGGTGGTGGTGTGGAAGGTGGTGCTGAGAGAAGGTACAAAGGAATCAG GATGAGGAAGTGGGGGAAGTGGGTTGCTGAAATCAGAGAACCAAACAAGCGTTCCAGGATTTGGCTCGGTTCATACTCCA CCCCTGTCGCCGCCGCCAGAGCCTACGACACCGCCGTTTTCTACCTCCGGGGACCCTCCGCGCGCCTCAACTTCCCGGAG CTTCTTGCCGGAGAACGCGCCGCCTTCGTTGGCGGCGACTGCGATATGTCGGCAGCTTTTATCAGGAAGAAAGCGACAGA GGTCGGTGCCAGAGTCGATGCTCTCCAGTCGGCAACTCTTCCCCTTCCCCACCACAACCACCACCCTCGTGCGGCGCCGG TGCCGGAGCTTCTCATAGGCGGTGGAGGCGGCGGGTCTGGAGATTTTGCGGAGCGGGTTGACCTGAATAAATTACCAGAA CCCGAGAGTTCGGATGAATGGGATGTGAGCTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0403800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKGEGGGGKRGGGGVEGGAERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPE LLAGERAAFVGGDCDMSAAFIRKKATEVGARVDALQSATLPLPHHNHHPRAAPVPELLIGGGGGGSGDFAERVDLNKLPE PESSDEWDVS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31729
19 167 149 5.4E-68 –
PANTHER
PTHR31729:SF0
19 167 149 5.4E-68 –
Gene3D
G3DSA:3.30.730.10
21 81 61 5.7E-29
IPR036955
SMART
SM00380
22 85 64 4.4E-38
IPR001471
CDD
cd00018
22 81 60 5.02553E-27
IPR001471
Pfam
PF00847
22 71 50 1.4E-10
IPR001471
SUPERFAMILY
SSF54171
22 80 59 7.19E-21
IPR016177
ProSiteProfiles
PS51032
22 79 58 22.313
IPR001471
PRINTS
PR00367
23 34 12 2.5E-11
IPR001471
PRINTS
PR00367
61 81 21 2.5E-11
IPR001471
MobiDBLite
mobidb-lite
121 170 50 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0403800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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