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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0403900 |
| Transcript ID | LotjaGi2g1v0403900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein, putative; TAIR: AT2G42240.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8VC52|RBPS2_MOUSE RNA-binding protein with multiple splicing 2; TrEMBL-Plants: tr|K7LN66|K7LN66_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0403900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90114663..90118808) extracted from Lotus japonicus Gifu genome v1.2.
CAGTGGGCCAGGCCCAGATAAGGAAGACCAGCTCCCTAATGGGCCAGCCCAATATTGTCAAGAAAATGAAAAGCACAACA ATTCAACAAAAAAAACAGAGGAGTTGTTGAGAGAGAAATGAAATACTCTAGGGCTTCCGAACCACTGCAATCGTGCTCCG ATGGACGACATGGCTGCCTACTACGCTCAAACCCAACCACCCGCCCTTCTCAATTATTCATATTATCAGCCACCTCCGCC GCCGCCTATCATGACGGTGGTGCCACCTCCTCCCGGCACCGTTTTCCCGCATCCGCAGTATGTTCCTCACCACCAGCAAC AACCTCTCTACAATTCCTTCGCTCTTCCTCAATCCCCCACACACGAGGTCCGTACCCTCTTCGTTGCTGGACTCCCTGAA GATGTAAAACCCCGCGAAATCTACAACCTCTTCCGCGAATTTCCTGGTTACGAATCATCGCATCTTCGTAGCCCCACCAA TTCATCACAGGTACAATAATAATCGATTCTGCAAACTGCAAAGCGTTTTCAACTGTTTTGATTATCTTGTAATTGTGTTT GCATTGATTGATTACTGATATGCTTTCTGTGACGTGATTTTTTGTTCCGATAGCCTTTTGCTTTTGCTGTGTTCATGAAT CAGCAATCTGCAGTAATGGCAATGCATGCTCTGAATGTAAGGCTCTTTTGTGTTACATACATTTCATGCTCAGTAGCAGT TTTCAGTGTCTGAATTGAATATTTTGATTGCTGTGGTTTGCAGGGGATGGTGTTTGATCTTGAAAAGAATTCAACTCTTT ATATTGATCTTGCCAAATCCAACTCTAGATCTAAGCGAACGCGGATAGGTGTGTGTGTGTCTTGATTACCTTATTTTCCT AATCCCATTTACATTTTAAGAGGTTTGAATTGAATTGTGATGGTTGATTGACATTGGTGAGCAGATGATGAGAGAGGTGG CTCGGATAAGAAAGCTAGAGGGTCTGCACCGTCATGGGCGACTCCTGATTCCGGTAAGTAAGATGGTGCTAGATTGTTTT AGTGTGTAGGATGTTGTTCTATGTATATGCGGTTGATGTTGATGATCTCTTGCTTAAAGACTAGTTAAATGTTGATCACA CAAAAGGACACTTTTATCTCACATTGCACATGTTTTGCACTCTTCGGCACTAGCAGGTGTTAGCAGCATTCACATGCCTG GAATGGGTAATCCTTCTATCAACATGAACACGATTGGTTATCCATCTGCACAAAGGTCATCTGCACTACTTAATCACACC TTTATTATATGGAAGTCATTGCTTCTAACTCAAATAGAGCACATTTTTCAATATTACAAGTTAATTATTTTGAGCTGCTG TTGGGGAACTCATTCTATATTATTAGAAGAAAATAACTAATGTGTTTATAGTACAAGAGAAATTCTTTTGGGCTATTGCC TTTGTATATCATGCTATCTCATCTAATTGTCTGTTTGTTTGTTTTCTGCAAAAGTTATGGGAGTGCTGATGGAAATGCTG TCAATGATGGTCTATATGGAAATCTGGTTAGTGTTATGTAGCACTCAATCTATCTGTTTTTTGCATCACCTTAAGATATT TACCTCTATTAGCTGTTCTAAATGGTTAAATCTTTCGGTGGTGAACTCAAAATGCTTTTCTCATAATCTTTTTTTTCCAG ACTATTAAAATTTGTGGTTAAACTGTACAATGTTTCTCAGTTATATGCTTTACATGGATTAGGCTGGTCAACATTATTAT GCTTTATTAAATTGTTGTATCTAACCGTGTTGTTTTTCCTTGTTTCTCTTGCATCTAGGACTATAGTTAATTTAAAATTA TTGCATTTTCCACTTCAAGTAATTGTTTTTATTTCATATCTTGTGTTGACAGAAAAAGTGTTCAATACCTTACATTCCTC AAAATACAATCCCCTGTGCAACTTTATTTGTAGCTAATCTGGGGCCGTCTTGTAATGAACAAGAGCTAATACAAGTGTTT TCTAGGTCAGTGTATATGTATTGTTCGAATTATTTTCGTATCTATACAGTCCGTAGATGCTGAAGTTGATTTTATTTTGG TGTATGTATCTTCTATCAGATATCCTGGATTTTTGAAACTGAAGATGCAGAGCACATATGGGGCTCCAGTTGCATTTGTT GATTTCCAGGTTTCTTTATTGTTGTCCTTTTTTTTTGCACTGCATATGATGAGACATGAATAAAAAAATGAAAAATTATG TTAATGAATTAAGAAAGTGGGTAGTTGAGTTTTTAATTAGGCAACAAGTCAACAACATGAAAAGTACCTAAAGAATAGCA CCTAAGTTTTACCCTTGGGAGTGTTATCACTCAGCAGTCAGCATGCTTCTTCTTGTGAAAGCATTGAAAGCCATGTTGAA AATTGCATAAAACTATTACCTAAATATTATAGTTATTCCCATATTTGATTTGCATGATTTTATTAGGAGGTTTTTGTGAA CTATCACGACAAGTGCATCTTGTAAAGCTCCCAGATTGATTGCTAACTTTATGTGCAGGACGTTGGTAGCTCCGCTGATG CTCTAAACAATCTGCAAGGCACCATTCTTCACTCCTCTCCAGCTGGCGAGGGAATGCGTTTAGAGTATCCTTTGGTTACC TGTTTGTTTTCTTTCATTGATTTTTTTTTCTCATCACCAACATTTGTTTTGTATACTTAATGATAATTTTAGATTTGCTA AATCGCGGATGGGAATGCGGAAGAAGCCAAAGTAAGTTACATGCTAGTAAGTAAAAAAAATTGAGATACACACTGTGCTG CGCTATGAATTGTTCTTTCCCGGTACAATAGAATGGATGCTGAGTGGTTTTATCCCAGAATTTGCAAATTTCAAATTTCA GTCTCTTAAAATGCATAGTAGGACCCCACGGCCCAAGTTAATTGTTTGTATTTTTCGTAGTGTTAGAGTTTCACATTGGA AAAGATCACCCGGGATTTTATTGACTGTAAATTTTATATAGAAGTACTTTTTTTTTACTTTTGATGGATTTATGATAATT CATATCAATTTTGTTTGATGTGTATCTTATGTGTTGTAATTTTGCTAGTGTAATTTATATGCCACTTCATACTTAGTGAA AAACTTAAAACTGATCATGGAATTCGACAGGCGTGGAACATATATTTGATATTTGACTCATCGCCGGAGTTCTCGTTTCT CGAAAATTATTAGGTGTACTTGTATTTTGTATGATTTTTCCAATTTTGTTCTAGTATGAAGTATTACCTCCTGTTATTAC TATTTTGATAGTTTATCCCTAATATTTATCACTTTTACAATTTCAGGAGAGTATTAGTTATATTTTCCAAATTACAGCCT TAGCATGACATTTTTAAATAATATTCTTTAATAGACGTGTCGCAATCTTACAGTATCAAATATTAAGGTATATGGTTAAG AATAGGGTTGACATTTAAAAATTTGGTTCCCTGGTGTATCAAGGGGCATTTTGGACCATCTCCCTCGCCACCTTCCCCTC GCCTCCTTCTCCACCATTCCCATGCTAGAAACGCTAGGACCCCCACCATTGTGTTGAACCACCCTAGTTGAGTTTGAACC AGCAAAGCAGAGCTCTTCTAACATTATCTCTCTCCCTCGTCGGTCTCCCTTTTCTCTCTCTAACGTTTTATCTCTTTCTC AAACTCTTGCTCTCGTTCTTTAGTTTCACTCATGAGGATGGTGCCGCCTCCTTCATGTTTCTATGTGACTTCATCAATCA CCCTAATTGATTTGATCTGAATGGTGGCTTTGGGTCTTGACAATATTGTCTTACTTTCCAAATTAGATTCGACTTGTGTG TATTTGAGGAAGTATTGCTTGCCCTAGAATTGGTCAAGAAGAAGATGGGAAGAAGTAATAGATTAAGGGTGAGGTTCCTT TGGGACGAAGAAGGGTTTCAACGAGTTGGGAGGGAATGAGAGATTGTGGGGAAAAGAAGGGTTTCAAATCGAAAGAAGAA AGAGAAATGCGATGTTTTCTCTAACGCACACAATCTTACCATTAAACCTTACAAACACCATGACTGGCACCATCTCACCA ACATTGTTGATGAAGACGTCGAGGTCGCTAAGACTATGGGTAGTTGCGGGTGGAGTCACAGAGAGG
CDS sequence (LotjaGi2g1v0403900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGACATGGCTGCCTACTACGCTCAAACCCAACCACCCGCCCTTCTCAATTATTCATATTATCAGCCACCTCCGCC GCCGCCTATCATGACGGTGGTGCCACCTCCTCCCGGCACCGTTTTCCCGCATCCGCAGTATGTTCCTCACCACCAGCAAC AACCTCTCTACAATTCCTTCGCTCTTCCTCAATCCCCCACACACGAGGTCCGTACCCTCTTCGTTGCTGGACTCCCTGAA GATGTAAAACCCCGCGAAATCTACAACCTCTTCCGCGAATTTCCTGGTTACGAATCATCGCATCTTCGTAGCCCCACCAA TTCATCACAGCCTTTTGCTTTTGCTGTGTTCATGAATCAGCAATCTGCAGTAATGGCAATGCATGCTCTGAATGGGATGG TGTTTGATCTTGAAAAGAATTCAACTCTTTATATTGATCTTGCCAAATCCAACTCTAGATCTAAGCGAACGCGGATAGAT GATGAGAGAGGTGGCTCGGATAAGAAAGCTAGAGGGTCTGCACCGTCATGGGCGACTCCTGATTCCGGTGTTAGCAGCAT TCACATGCCTGGAATGGGTAATCCTTCTATCAACATGAACACGATTGGTTATCCATCTGCACAAAGTTATGGGAGTGCTG ATGGAAATGCTGTCAATGATGGTCTATATGGAAATCTGAAAAAGTGTTCAATACCTTACATTCCTCAAAATACAATCCCC TGTGCAACTTTATTTGTAGCTAATCTGGGGCCGTCTTGTAATGAACAAGAGCTAATACAAGTGTTTTCTAGATATCCTGG ATTTTTGAAACTGAAGATGCAGAGCACATATGGGGCTCCAGTTGCATTTGTTGATTTCCAGGACGTTGGTAGCTCCGCTG ATGCTCTAAACAATCTGCAAGGCACCATTCTTCACTCCTCTCCAGCTGGCGAGGGAATGCGTTTAGAATTTGCTAAATCG CGGATGGGAATGCGGAAGAAGCCAAAGTAA
Protein sequence (LotjaGi2g1v0403900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDMAAYYAQTQPPALLNYSYYQPPPPPPIMTVVPPPPGTVFPHPQYVPHHQQQPLYNSFALPQSPTHEVRTLFVAGLPE DVKPREIYNLFREFPGYESSHLRSPTNSSQPFAFAVFMNQQSAVMAMHALNGMVFDLEKNSTLYIDLAKSNSRSKRTRID DERGGSDKKARGSAPSWATPDSGVSSIHMPGMGNPSINMNTIGYPSAQSYGSADGNAVNDGLYGNLKKCSIPYIPQNTIP CATLFVANLGPSCNEQELIQVFSRYPGFLKLKMQSTYGAPVAFVDFQDVGSSADALNNLQGTILHSSPAGEGMRLEFAKS RMGMRKKPK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 326 | 322 | 2.7E-147 | – | |
| PANTHER | 5 | 326 | 322 | 2.7E-147 | – | |
| Gene3D | 66 | 154 | 89 | 5.3E-23 | ||
| SUPERFAMILY | 70 | 306 | 237 | 9.46E-27 | ||
| CDD | 71 | 146 | 76 | 3.73949E-31 | – | |
| ProSiteProfiles | 71 | 150 | 80 | 13.021 | ||
| SMART | 72 | 144 | 73 | 5.2E-11 | ||
| Pfam | 73 | 136 | 64 | 6.5E-12 | ||
| MobiDBLite | 152 | 169 | 18 | - | – | |
| MobiDBLite | 152 | 185 | 34 | - | – | |
| Gene3D | 235 | 327 | 93 | 6.4E-19 | ||
| CDD | 240 | 319 | 80 | 3.45375E-41 | – | |
| ProSiteProfiles | 242 | 320 | 79 | 12.799 | ||
| SMART | 243 | 316 | 74 | 3.8E-7 | ||
| Pfam | 244 | 306 | 63 | 1.8E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0403900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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