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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0404700 |
| Transcript ID | LotjaGi2g1v0404700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transmembrane protein, putative (DUF247); TAIR: AT3G50120.1 transmembrane protein, putative (DUF247); Swiss-Prot: sp|Q9SD53|Y3720_ARATH UPF0481 protein At3g47200; TrEMBL-Plants: tr|A0A151SC85|A0A151SC85_CAJCA UPF0481 protein family; Found in the gene: LotjaGi2g1v0404700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90160939..90162537) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTAGCGGTATTCAACAAAGAACTCTTGAGTTGGTACCTTATCACCCTCAAACTCAGACAAACCTTAGAATCCGGGCG TCCACCATCTCCTAATTCAGAAAACCGGTCAATCGAGTTTCCTCCTCAGCAGCAGCAAAAGCTTCAGCAGGAACCTTCAG AATCATTGCATGTCATCGTCAATGAAAATGGTGAACATCTGCAAGAGGAAGAAGCTAGCTCCCCAGTATCTGATTGGGTG ATCTCCATCAAGGAAAAACTAGACCAGGCATGTCAAGATGATGTAGCAAGTTCATGGGCCAAGCTATCAATCTACAAAAT CCCCCACTACCTTAGAGATAGTACTGGCGATGACAAAGCATATGCACCTCAGATTGTGTCATTAGGTCCTTACCACCATG GCAAAAAGCGCCTTCGCCAAATGGAACGCCATAAATGGCGCTCCCTTGACCATGTCCTCAAGCGAACCAAACACGACATT AGGCTCTACCTCAACTCCATGAAAGAGATAGAAGAAAGAGCTCGCTCCTTCTATGAGGGACCAATCAGTTTAAGCAGCAA TGAGTTTGTGGAAATGTTGGTCCTTGATGGTTGTTTTGTGCTGGAGCTATTCAGAGGAGCTACAGAGGGGTTCAAGGAAC TCGGGTATTCAAGGAACGATCCTATTTTTGCAATGCGTGGATCAATGCACTCCATTCATAGAGACATGATCATGCTAGAA AACCAGCTTCCACTTTTCGTACTAGATCGGCTTTTGGGACTTCAACTTGGTAACCCAGACCTAAAAGGACTTGTTGCAGG TCTAGCTCTCAGGTTCTTCGACCCCTTAATGCCAACAGATGAGCCATTAACAAAGAGTGATATAAACAAATTGGAATCAT CATTTAAAAGCAGTGATACCTTTGATCCTTTATCTGATTTAGGCGGTCTTCATTGCTTGGATGTGTTCAGGAGAAGTCTA CTGCGCACAGGACCTCAATCAACACCAAGAATATGGATCAAACGCTGGTCGAATAACCATAGAGTTGCAGACAAACGGCG CCAGCAACTGATACACTGTGTCACAGAGCTTAAAGAGGCTGGAATCAAGTTCAAGAAAAGGAAGACGGACCGCTTCTGGG ATATAAAATTTGAGAACGGCATCCTGCGGATACCACGACTCTTGATCCATGATGGTACCAAGTCTCTGTTCCTCAACCTC ATTGCCTTTGAGCAGTGTCATCTTGATTGCAGCAATGACATCACATCCTATGTTATCTTCATGGACAACTTGATTAACTC TCCAGAAGATGTGGGGTACCTTCATTACCATGGGATAATCGAGCATTGGCTTGGCAGTGATGAAGAAGTTGCAGACCTTT TTAATCGCTTATGTCAAGAGGTTGTGTTTGACATTAACAACAGTTACCTTTCCACAATGTCAGATGCTGTGAATAGGTAT TATAACCATAGATGGAACAAGTGGTATGCAAGCTTGAGACACAATTACTTTAGTAATCCCTGGGCGATTATCTCTTTCAT TGCTGCTGTTGTCTTGTTGCTACTTACTCTTGCACAAACCTACTACAGTGTATATGGTTATTACAGACCAGCTCAGTAA
CDS sequence (LotjaGi2g1v0404700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAGCGGTATTCAACAAAGAACTCTTGAGTTGGTACCTTATCACCCTCAAACTCAGACAAACCTTAGAATCCGGGCG TCCACCATCTCCTAATTCAGAAAACCGGTCAATCGAGTTTCCTCCTCAGCAGCAGCAAAAGCTTCAGCAGGAACCTTCAG AATCATTGCATGTCATCGTCAATGAAAATGGTGAACATCTGCAAGAGGAAGAAGCTAGCTCCCCAGTATCTGATTGGGTG ATCTCCATCAAGGAAAAACTAGACCAGGCATGTCAAGATGATGTAGCAAGTTCATGGGCCAAGCTATCAATCTACAAAAT CCCCCACTACCTTAGAGATAGTACTGGCGATGACAAAGCATATGCACCTCAGATTGTGTCATTAGGTCCTTACCACCATG GCAAAAAGCGCCTTCGCCAAATGGAACGCCATAAATGGCGCTCCCTTGACCATGTCCTCAAGCGAACCAAACACGACATT AGGCTCTACCTCAACTCCATGAAAGAGATAGAAGAAAGAGCTCGCTCCTTCTATGAGGGACCAATCAGTTTAAGCAGCAA TGAGTTTGTGGAAATGTTGGTCCTTGATGGTTGTTTTGTGCTGGAGCTATTCAGAGGAGCTACAGAGGGGTTCAAGGAAC TCGGGTATTCAAGGAACGATCCTATTTTTGCAATGCGTGGATCAATGCACTCCATTCATAGAGACATGATCATGCTAGAA AACCAGCTTCCACTTTTCGTACTAGATCGGCTTTTGGGACTTCAACTTGGTAACCCAGACCTAAAAGGACTTGTTGCAGG TCTAGCTCTCAGGTTCTTCGACCCCTTAATGCCAACAGATGAGCCATTAACAAAGAGTGATATAAACAAATTGGAATCAT CATTTAAAAGCAGTGATACCTTTGATCCTTTATCTGATTTAGGCGGTCTTCATTGCTTGGATGTGTTCAGGAGAAGTCTA CTGCGCACAGGACCTCAATCAACACCAAGAATATGGATCAAACGCTGGTCGAATAACCATAGAGTTGCAGACAAACGGCG CCAGCAACTGATACACTGTGTCACAGAGCTTAAAGAGGCTGGAATCAAGTTCAAGAAAAGGAAGACGGACCGCTTCTGGG ATATAAAATTTGAGAACGGCATCCTGCGGATACCACGACTCTTGATCCATGATGGTACCAAGTCTCTGTTCCTCAACCTC ATTGCCTTTGAGCAGTGTCATCTTGATTGCAGCAATGACATCACATCCTATGTTATCTTCATGGACAACTTGATTAACTC TCCAGAAGATGTGGGGTACCTTCATTACCATGGGATAATCGAGCATTGGCTTGGCAGTGATGAAGAAGTTGCAGACCTTT TTAATCGCTTATGTCAAGAGGTTGTGTTTGACATTAACAACAGTTACCTTTCCACAATGTCAGATGCTGTGAATAGGTAT TATAACCATAGATGGAACAAGTGGTATGCAAGCTTGAGACACAATTACTTTAGTAATCCCTGGGCGATTATCTCTTTCAT TGCTGCTGTTGTCTTGTTGCTACTTACTCTTGCACAAACCTACTACAGTGTATATGGTTATTACAGACCAGCTCAGTAA
Protein sequence (LotjaGi2g1v0404700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAVFNKELLSWYLITLKLRQTLESGRPPSPNSENRSIEFPPQQQQKLQQEPSESLHVIVNENGEHLQEEEASSPVSDWV ISIKEKLDQACQDDVASSWAKLSIYKIPHYLRDSTGDDKAYAPQIVSLGPYHHGKKRLRQMERHKWRSLDHVLKRTKHDI RLYLNSMKEIEERARSFYEGPISLSSNEFVEMLVLDGCFVLELFRGATEGFKELGYSRNDPIFAMRGSMHSIHRDMIMLE NQLPLFVLDRLLGLQLGNPDLKGLVAGLALRFFDPLMPTDEPLTKSDINKLESSFKSSDTFDPLSDLGGLHCLDVFRRSL LRTGPQSTPRIWIKRWSNNHRVADKRRQQLIHCVTELKEAGIKFKKRKTDRFWDIKFENGILRIPRLLIHDGTKSLFLNL IAFEQCHLDCSNDITSYVIFMDNLINSPEDVGYLHYHGIIEHWLGSDEEVADLFNRLCQEVVFDINNSYLSTMSDAVNRY YNHRWNKWYASLRHNYFSNPWAIISFIAAVVLLLLTLAQTYYSVYGYYRPAQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 500 | 500 | - | – | |
| MobiDBLite | 24 | 53 | 30 | - | – | |
| PANTHER | 71 | 531 | 461 | 1.1E-238 | – | |
| PANTHER | 71 | 531 | 461 | 1.1E-238 | ||
| Pfam | 104 | 515 | 412 | 1.9E-126 | ||
| Coils | 153 | 173 | 21 | - | – | |
| Phobius | 501 | 522 | 22 | - | – | |
| TMHMM | 503 | 525 | 23 | - | – | |
| Phobius | 523 | 532 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0404700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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