Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0404900 |
| Transcript ID | LotjaGi2g1v0404900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin; TAIR: AT5G67260.1 CYCLIN D3;2; Swiss-Prot: sp|Q9FGQ7|CCD32_ARATH Cyclin-D3-2; TrEMBL-Plants: tr|I3SFC1|I3SFC1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0404900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90175387..90177415) extracted from Lotus japonicus Gifu genome v1.2.
GCATGTAGTAAAAAGCAGAACACAGAATCAAAAGAAAATGACATTGTTTTTCGAAGAAGAAGAAGAACCATAACATCTCT TCATCTTCATCTTCTTCTTCTTCCAACAACAGAGAAAAATGCCTCAACAACACTCTCCCTCTTCCCTCAACATCCTTCTC TGCCAAGAACAATGCACTTTCCACAACAACACTCTCCCATCTTTACCTTTGATTTCGCTCGACAATGAAGACGATTACCT CACCACTCTAATCTCCAAAGAGAAAGCAACCCATTTCCATTCCCCTGCTGATGGAATCCTAGCTTCTCATGAGGGTCATC GCCATGATGCTGTTCGCTGGATTTCTGGAGTTTCAGCTTTCTATGGTTTCACTGCTTTGACCACTGTTCTTGCAGTTAAC TACTTTGACAGGTTCGTATCGACCCTGAAGTTTCAGATGGATAAGCCATGGATGACTCACCTCACTGCAGTCACCTGTTT GTCTCTTGCTGCAAAAATGGAAGAAACCCAAGTGCCACTTCTTTTGGACCTTCAGCAAGTATGCTTTTGATGTTTCCTTA TATAGAATGCTGTTTGTTTTTTGTTCTTTGCCTTTAAGGTTTTTGAAATTAGGGTTCTTGTTTTGATTAGGTGGAGGAAT CAGAGTTCTTGTTTGAAGCAAAGACCATACAGAGAATGGAGCTACTTGTGTTGTCAACTCTTAATTGGAGAATGAACCCT GTTACCCCAATTTCCTTCTTTCAATGCGTTGTCACAAGGCTTGGTTTCATGAATGGCTTGCTTTCTGAGTTTCTGTGTAG GTGCGAACGAGTTCTTCTCTGTCTCATTGTGGGTAAGCAATGGAACTAGTAAACAACATGAACAATTTCTAATTCTATCA ATGTGGTTGAAGACATTCACATACAATTGATTATTTTATTTTTTTTAGATTCAAGGGTTATGAGCTATCCCCCTTCTACA TTGGCTGCTGCAACAATGATCCATATCATTAAAGAGATTGAACCGTTTAATGCAACAGAATACACAGATCAACTTTTGGA TTTACTCAAAATTAGTGAGGTATGTTCTTCAACTTCAATGGTTATGTTCCCTTGGATATCCTGATTTTCAAATCTGCTAA AGATTCAATAAGGTAATTGCATAGTTGAAATAATTGGATAGTTTTGGCGGTGATGTAACAGGAACAAGTGAATGAGTGCT ACAAAATCATGCTGAAACTATTAGTTTGCTGTGGTGATGTTCACAATCTTCACCAAAAGCGTAAACGCCTTTATGAACCA AGTAGCCCCGGTGGAGTCATTGATGCATCTTTCAGCTGTGACAGCTCAAATGATTCATGGACCGTGGCATCACCATTATC ACTCTCAGTGGAGCCTGTGTTTAAGAGGAGCAAAGCTCAAGATCAGCATATGCGATTGCCTTCAATAAATCGCATGTCTG TTCATCTTCTAAATAGTCCTCGTTAATAACTTATCTTAGAATAACTTATAACATGTTAGGTTTATTTGGCAATGCCTATA TATCTTGGAGTTATGTTATTTAGGTGAGGTGTAATATGTTTTCAGCTTTTGCATTGCTGGCCTAACATATGAAAATGAAT TATGCAGAGAGGCCCTATTAGTTTAAGCAGAACAAGGATCTGATGCTGAGTAGAAAGTTGAATTGTAGATTTATCATTTA CTTGTGTTGAGTTTCCAATTCAATCTGTTACACATTATATTTCTCAAGAAGCACAATTAAGATATTTCCCTTGTTCCATT TACTTTATCATCTGCCAATCTCTTTCCTGTTGTGCAGAATTAAAACTGCACATGGTGGTTAAAAGATAAACAAAGATGGA TGTAATGTCTTTAGTGATGCATTAGATTAATAAAGCCACTGCAAGTCATCTTTGTTATCCCTTCAGGAGATACAGTGGTT CTTTAGCAGTGCATACCTCTATTATTTCCCTAAACCCTATTTTGCCTAGAACATGCCAAATTCATTAATCTGTTTATACT TGCAGTTATCTCAATTGTTTATAAGAAGG
CDS sequence (LotjaGi2g1v0404900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTCAACAACACTCTCCCTCTTCCCTCAACATCCTTCTCTGCCAAGAACAATGCACTTTCCACAACAACACTCTCCC ATCTTTACCTTTGATTTCGCTCGACAATGAAGACGATTACCTCACCACTCTAATCTCCAAAGAGAAAGCAACCCATTTCC ATTCCCCTGCTGATGGAATCCTAGCTTCTCATGAGGGTCATCGCCATGATGCTGTTCGCTGGATTTCTGGAGTTTCAGCT TTCTATGGTTTCACTGCTTTGACCACTGTTCTTGCAGTTAACTACTTTGACAGGTTCGTATCGACCCTGAAGTTTCAGAT GGATAAGCCATGGATGACTCACCTCACTGCAGTCACCTGTTTGTCTCTTGCTGCAAAAATGGAAGAAACCCAAGTGCCAC TTCTTTTGGACCTTCAGCAAGTGGAGGAATCAGAGTTCTTGTTTGAAGCAAAGACCATACAGAGAATGGAGCTACTTGTG TTGTCAACTCTTAATTGGAGAATGAACCCTGTTACCCCAATTTCCTTCTTTCAATGCGTTGTCACAAGGCTTGGTTTCAT GAATGGCTTGCTTTCTGAGTTTCTGTGTAGGTGCGAACGAGTTCTTCTCTGTCTCATTGTGGATTCAAGGGTTATGAGCT ATCCCCCTTCTACATTGGCTGCTGCAACAATGATCCATATCATTAAAGAGATTGAACCGTTTAATGCAACAGAATACACA GATCAACTTTTGGATTTACTCAAAATTAGTGAGGAACAAGTGAATGAGTGCTACAAAATCATGCTGAAACTATTAGTTTG CTGTGGTGATGTTCACAATCTTCACCAAAAGCGTAAACGCCTTTATGAACCAAGTAGCCCCGGTGGAGTCATTGATGCAT CTTTCAGCTGTGACAGCTCAAATGATTCATGGACCGTGGCATCACCATTATCACTCTCAGTGGAGCCTGTGTTTAAGAGG AGCAAAGCTCAAGATCAGCATATGCGATTGCCTTCAATAAATCGCATGTCTGTTCATCTTCTAAATAGTCCTCGTTAA
Protein sequence (LotjaGi2g1v0404900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPQQHSPSSLNILLCQEQCTFHNNTLPSLPLISLDNEDDYLTTLISKEKATHFHSPADGILASHEGHRHDAVRWISGVSA FYGFTALTTVLAVNYFDRFVSTLKFQMDKPWMTHLTAVTCLSLAAKMEETQVPLLLDLQQVEESEFLFEAKTIQRMELLV LSTLNWRMNPVTPISFFQCVVTRLGFMNGLLSEFLCRCERVLLCLIVDSRVMSYPPSTLAAATMIHIIKEIEPFNATEYT DQLLDLLKISEEQVNECYKIMLKLLVCCGDVHNLHQKRKRLYEPSSPGGVIDASFSCDSSNDSWTVASPLSLSVEPVFKR SKAQDQHMRLPSINRMSVHLLNSPR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 73 | 73 | - | – | |
| PANTHER | 22 | 277 | 256 | 3.5E-96 | ||
| PANTHER | 22 | 277 | 256 | 3.5E-96 | – | |
| SUPERFAMILY | 34 | 169 | 136 | 4.95E-31 | ||
| Pfam | 44 | 169 | 126 | 3.8E-25 | ||
| Gene3D | 65 | 169 | 105 | 4.4E-45 | – | |
| CDD | 67 | 161 | 95 | 2.85779E-12 | ||
| SMART | 73 | 162 | 90 | 8.7E-13 | ||
| TMHMM | 74 | 96 | 23 | - | – | |
| Phobius | 74 | 96 | 23 | - | – | |
| Phobius | 97 | 345 | 249 | - | – | |
| SUPERFAMILY | 153 | 271 | 119 | 4.71E-9 | ||
| Gene3D | 170 | 260 | 91 | 4.4E-45 | – | |
| Pfam | 171 | 268 | 98 | 5.1E-17 | ||
| SMART | 171 | 299 | 129 | 3.8E-7 | ||
| SMART | 175 | 263 | 89 | 0.9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi2g1v0404900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…