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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0405900 |
| Transcript ID | LotjaGi2g1v0405900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GH3.3; TAIR: AT2G14960.1 Auxin-responsive GH3 family protein; Swiss-Prot: sp|O82333|GH31_ARATH Probable indole-3-acetic acid-amido synthetase GH3.1; TrEMBL-Plants: tr|G7K574|G7K574_MEDTR Indole-3-acetic acid-amido synthetase; Found in the gene: LotjaGi2g1v0405900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90299525..90302319) extracted from Lotus japonicus Gifu genome v1.2.
CAAGAATTGTCTTAGTCTTTTTGTCCCCCAGATCCACCTTGACTCCCTCAGCGTCCTTCCCATAGTACTATTTCCTCCGG CCTGTCGACGTGGCAACCCGTGACATGGCACTGAGTTTTTTGCCGCTATAAATACCCCATCACTCTCTTCCTTCTTCATT CCCATTCCACCCAAGTTATCAAACATTGTTTCTACTTTCTCATTTGTTTGCTCTCTAGAACCTTCTGTCATCTTTTCCTT TCCTTGATTAGCATAACTCATTGTCGATCATCATGGTCGTTGAATCTGAACCCTTGCAATCCCCTCGTTCATCTAGCACC GATGAGAAGAACGCAAAGGCTCTTCAATTCATTGAAGAAATGACCCGAAACACTGACTCTGTCCAAGAGAGAGTCCTTTC TGAGATTCTGAGCCAAAACGCTGAAACTGAGTACCTGAAACGTTTCGGTCTCAACGGAGCCACTGACCGTGAAACCTTCA AGTCCAAGGTCCCCGTCGTTACATACGAGGATCTGCTGCCTGACATTCAACGTATTGCTAATGGTGACCGCTCTCCTATC CTCTCCGCTCACCCCATCTCTGAGTTCCTCACAAGGTATATATATAATATACAAATTTCAATATTAATAGTATATATTTT AATATAAATTCATTTTTATATATTTTTATTCAATCATGGTTGAATGAGTTTACATGTGTGAACAGTTCTGGAACATCTGC TGGTGAAAGAAAACTGATGCCAACAATTGCTGAAGAGATGGACCGTCGACAGTTACTGTACAGTCTTTTGATGCCGGTGA TGAACCAGTACGTTTTTTTTCATTTATTGCGTAGTTATTATGCATTGATTGTAATGAGTAACAGTAGAATTTTGGAATTT ATTGATCATTTTCTTTTTGTGCAGATACGTGCCTGATTTGGACAAAGGCAAGGCACTGCACTTCCTGTTCATTAAAGCAG AGACCAAGACTCCTAGTGGGTTAGTGGCACGTCCAGTGCTCACGAGCTATTACAAGAGTGAACAGTTCAAGAAAAGACCA TTTGACCCTTACAATGTTTTGACTAGCCCAAATGAAGCAGTCCTCTGCTCCGATTCGTTTCAGAGCATGTATACACAGAT GTTGTGTGGCCTCTACATGCGCCACGAGGTTCTCCGAGTCGGGGCGGTTTTCGCCTCCGGTCTTCTCAGAGCCATCCGGT TCCTCCAGCTCAATTGGGAAGAATTAGCCCATGACATCTCCACCGGAACCCTAAATCCCAAAATCATTGAACCTTCCCTC AAGGAATGTATGTCCGGAATCATGAAACCGGATCCTGAACTCGCTGATTTCATTGTAAAAGAGTGCTCAGGGGAGAATTG GGAGCGCATAATCCCCAGGATTTGGCCTAACACCAAGTACCTCGATGTCATCGTCACCGGTGCCATGGCTCAGTACATCC CAACCCTTGATTACTACAGCGGTAACCTTCCGAAGCCGTGTACCATGTACGCGTCTTCAGAATGTTACTTTGGGCTTAAC CTCAAGCCCATGGCTGAGCCTTCCGAGGTTTCATACACTATCATGCCAAACATGGGGTACTTTGAATTCTTACCCCATGA TGAGTCATCGAGTCACGTGACAAGCATGTTGTCACGTGACTCTCCCCCTTGCCTGGTTGATATGGCCGACGTGGAAGAGG GAAAATACTATGAGCTCATTATTACAACATACTCCGGTCTTTGTCGATACCGTGTGGGTGACATCCTCCAGGTCACCGGT TTCCACAACGCGGACCCACAGTTCCGGTTCGTGCGGCGGAAGAATGTGCTTCTGAGCATTGATTCGGACAAAACAGACGA GTCAGAGCTTCAAAGAGCAATTGAAAATGCTGAGCAATTATTGAAGGAGTTCAAAACCAGTGTGGTTGAGTACACTAGCT TCGCTGATACCAAATCGATTCCGGGGCATTATGTAATTTACTGGGAGCTTCTAATGAAAGACTCGTCTTTCCCTCCAACG GGTGATGTGTTGGACAAGTGCTGTTTGGTTATGGAAGAGTCGTTGAACACGGTTTACAGGCAAGGAAGGAACGCTGATAA TTCTATTGGACCGCTAGAGATACGAGTGGTGAAGAATGGCACGTTTGAGGAGCTAATGGACTACGCGATCTCAAGAGGCG CGTCGATTAACCAGTACAAGGTGCCAAGGTGCGTGAGCTTCACGCCCATAATGGAACTGCTTGATTCTAGGGTTGTTTCC TCTCATTTTAGCCCAGCTGCACCGCATTGGACCCCGGAACGTCGTCGTTGAGGGGTGGCTAGGAACTAGCTAGTAACGTA CAACATGCAGACATGCACGAGAATAAGGGGCGAAAAGAAAAAGTGATGTTTTCCCTACCAAACCAGAAAGTATCTGCATT CAATGTTGTTTGATATTTCAAAAATGCACTATTTTTTCTTTTAGATGTTTTGTTCTTTTTTTTTTTCTCTTTTTGGCTGT GCCTTTGTTAAACAGTTATTCCTTTTTAGCTTTTATTGTCTGTAAAATAAGTTGAGCAATTCAAAGTGGGTGCTTGCACA TGTAGCTTTCATGTAAATGCTTGTTTATCCTCAGTTTGGAAATCATGTTAGCTTACGTTCACACTTTGTGTCCTAAAGTT TTGAAAAGACTTCAAAACTCAGAAATGATTGATACCGCTCACGTTTGGTGTGTGTCTAATTAAGTTGAACACTATGTGTG ATTAATTGAGTGTTTGATTAATATACTGAAAAAATTACACTGAAATTAAAATTACGGTAAACAATTATTTGTGCC
CDS sequence (LotjaGi2g1v0405900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCGTTGAATCTGAACCCTTGCAATCCCCTCGTTCATCTAGCACCGATGAGAAGAACGCAAAGGCTCTTCAATTCAT TGAAGAAATGACCCGAAACACTGACTCTGTCCAAGAGAGAGTCCTTTCTGAGATTCTGAGCCAAAACGCTGAAACTGAGT ACCTGAAACGTTTCGGTCTCAACGGAGCCACTGACCGTGAAACCTTCAAGTCCAAGGTCCCCGTCGTTACATACGAGGAT CTGCTGCCTGACATTCAACGTATTGCTAATGGTGACCGCTCTCCTATCCTCTCCGCTCACCCCATCTCTGAGTTCCTCAC AAGTTCTGGAACATCTGCTGGTGAAAGAAAACTGATGCCAACAATTGCTGAAGAGATGGACCGTCGACAGTTACTGTACA GTCTTTTGATGCCGGTGATGAACCAATACGTGCCTGATTTGGACAAAGGCAAGGCACTGCACTTCCTGTTCATTAAAGCA GAGACCAAGACTCCTAGTGGGTTAGTGGCACGTCCAGTGCTCACGAGCTATTACAAGAGTGAACAGTTCAAGAAAAGACC ATTTGACCCTTACAATGTTTTGACTAGCCCAAATGAAGCAGTCCTCTGCTCCGATTCGTTTCAGAGCATGTATACACAGA TGTTGTGTGGCCTCTACATGCGCCACGAGGTTCTCCGAGTCGGGGCGGTTTTCGCCTCCGGTCTTCTCAGAGCCATCCGG TTCCTCCAGCTCAATTGGGAAGAATTAGCCCATGACATCTCCACCGGAACCCTAAATCCCAAAATCATTGAACCTTCCCT CAAGGAATGTATGTCCGGAATCATGAAACCGGATCCTGAACTCGCTGATTTCATTGTAAAAGAGTGCTCAGGGGAGAATT GGGAGCGCATAATCCCCAGGATTTGGCCTAACACCAAGTACCTCGATGTCATCGTCACCGGTGCCATGGCTCAGTACATC CCAACCCTTGATTACTACAGCGGTAACCTTCCGAAGCCGTGTACCATGTACGCGTCTTCAGAATGTTACTTTGGGCTTAA CCTCAAGCCCATGGCTGAGCCTTCCGAGGTTTCATACACTATCATGCCAAACATGGGGTACTTTGAATTCTTACCCCATG ATGAGTCATCGAGTCACGTGACAAGCATGTTGTCACGTGACTCTCCCCCTTGCCTGGTTGATATGGCCGACGTGGAAGAG GGAAAATACTATGAGCTCATTATTACAACATACTCCGGTCTTTGTCGATACCGTGTGGGTGACATCCTCCAGGTCACCGG TTTCCACAACGCGGACCCACAGTTCCGGTTCGTGCGGCGGAAGAATGTGCTTCTGAGCATTGATTCGGACAAAACAGACG AGTCAGAGCTTCAAAGAGCAATTGAAAATGCTGAGCAATTATTGAAGGAGTTCAAAACCAGTGTGGTTGAGTACACTAGC TTCGCTGATACCAAATCGATTCCGGGGCATTATGTAATTTACTGGGAGCTTCTAATGAAAGACTCGTCTTTCCCTCCAAC GGGTGATGTGTTGGACAAGTGCTGTTTGGTTATGGAAGAGTCGTTGAACACGGTTTACAGGCAAGGAAGGAACGCTGATA ATTCTATTGGACCGCTAGAGATACGAGTGGTGAAGAATGGCACGTTTGAGGAGCTAATGGACTACGCGATCTCAAGAGGC GCGTCGATTAACCAGTACAAGGTGCCAAGGTGCGTGAGCTTCACGCCCATAATGGAACTGCTTGATTCTAGGGTTGTTTC CTCTCATTTTAGCCCAGCTGCACCGCATTGGACCCCGGAACGTCGTCGTTGA
Protein sequence (LotjaGi2g1v0405900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVVESEPLQSPRSSSTDEKNAKALQFIEEMTRNTDSVQERVLSEILSQNAETEYLKRFGLNGATDRETFKSKVPVVTYED LLPDIQRIANGDRSPILSAHPISEFLTSSGTSAGERKLMPTIAEEMDRRQLLYSLLMPVMNQYVPDLDKGKALHFLFIKA ETKTPSGLVARPVLTSYYKSEQFKKRPFDPYNVLTSPNEAVLCSDSFQSMYTQMLCGLYMRHEVLRVGAVFASGLLRAIR FLQLNWEELAHDISTGTLNPKIIEPSLKECMSGIMKPDPELADFIVKECSGENWERIIPRIWPNTKYLDVIVTGAMAQYI PTLDYYSGNLPKPCTMYASSECYFGLNLKPMAEPSEVSYTIMPNMGYFEFLPHDESSSHVTSMLSRDSPPCLVDMADVEE GKYYELIITTYSGLCRYRVGDILQVTGFHNADPQFRFVRRKNVLLSIDSDKTDESELQRAIENAEQLLKEFKTSVVEYTS FADTKSIPGHYVIYWELLMKDSSFPPTGDVLDKCCLVMEESLNTVYRQGRNADNSIGPLEIRVVKNGTFEELMDYAISRG ASINQYKVPRCVSFTPIMELLDSRVVSSHFSPAAPHWTPERRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 12 | 600 | 589 | 0.0 | – | |
| PANTHER | 12 | 600 | 589 | 0.0 | ||
| Pfam | 27 | 573 | 547 | 7.7E-201 | ||
| Coils | 447 | 474 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0405900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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