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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0405900 |
| Transcript ID | LotjaGi2g1v0405900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GH3.3; TAIR: AT2G23170.1 Auxin-responsive GH3 family protein; Swiss-Prot: sp|O22190|GH33_ARATH Indole-3-acetic acid-amido synthetase GH3.3; TrEMBL-Plants: tr|A0A142L096|A0A142L096_PEA Indole-3-acetyl-amido synthetase; Found in the gene: LotjaGi2g1v0405900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90300216..90301815) extracted from Lotus japonicus Gifu genome v1.2.
ACATGTGTGAACAGTTCTGGAACATCTGCTGGTGAAAGAAAACTGATGCCAACAATTGCTGAAGAGATGGACCGTCGACA GTTACTGTACAGTCTTTTGATGCCGGTGATGAACCAGTACGTTTTTTTTCATTTATTGCGTAGTTATTATGCATTGATTG TAATGAGTAACAGTAGAATTTTGGAATTTATTGATCATTTTCTTTTTGTGCAGATACGTGCCTGATTTGGACAAAGGCAA GGCACTGCACTTCCTGTTCATTAAAGCAGAGACCAAGACTCCTAGTGGGTTAGTGGCACGTCCAGTGCTCACGAGCTATT ACAAGAGTGAACAGTTCAAGAAAAGACCATTTGACCCTTACAATGTTTTGACTAGCCCAAATGAAGCAGTCCTCTGCTCC GATTCGTTTCAGAGCATGTATACACAGATGTTGTGTGGCCTCTACATGCGCCACGAGGTTCTCCGAGTCGGGGCGGTTTT CGCCTCCGGTCTTCTCAGAGCCATCCGGTTCCTCCAGCTCAATTGGGAAGAATTAGCCCATGACATCTCCACCGGAACCC TAAATCCCAAAATCATTGAACCTTCCCTCAAGGAATGTATGTCCGGAATCATGAAACCGGATCCTGAACTCGCTGATTTC ATTGTAAAAGAGTGCTCAGGGGAGAATTGGGAGCGCATAATCCCCAGGATTTGGCCTAACACCAAGTACCTCGATGTCAT CGTCACCGGTGCCATGGCTCAGTACATCCCAACCCTTGATTACTACAGCGGTAACCTTCCGAAGCCGTGTACCATGTACG CGTCTTCAGAATGTTACTTTGGGCTTAACCTCAAGCCCATGGCTGAGCCTTCCGAGGTTTCATACACTATCATGCCAAAC ATGGGGTACTTTGAATTCTTACCCCATGATGAGTCATCGAGTCACGTGACAAGCATGTTGTCACGTGACTCTCCCCCTTG CCTGGTTGATATGGCCGACGTGGAAGAGGGAAAATACTATGAGCTCATTATTACAACATACTCCGGTCTTTGTCGATACC GTGTGGGTGACATCCTCCAGGTCACCGGTTTCCACAACGCGGACCCACAGTTCCGGTTCGTGCGGCGGAAGAATGTGCTT CTGAGCATTGATTCGGACAAAACAGACGAGTCAGAGCTTCAAAGAGCAATTGAAAATGCTGAGCAATTATTGAAGGAGTT CAAAACCAGTGTGGTTGAGTACACTAGCTTCGCTGATACCAAATCGATTCCGGGGCATTATGTAATTTACTGGGAGCTTC TAATGAAAGACTCGTCTTTCCCTCCAACGGGTGATGTGTTGGACAAGTGCTGTTTGGTTATGGAAGAGTCGTTGAACACG GTTTACAGGCAAGGAAGGAACGCTGATAATTCTATTGGACCGCTAGAGATACGAGTGGTGAAGAATGGCACGTTTGAGGA GCTAATGGACTACGCGATCTCAAGAGGCGCGTCGATTAACCAGTACAAGGTGCCAAGGTGCGTGAGCTTCACGCCCATAA TGGAACTGCTTGATTCTAGGGTTGTTTCCTCTCATTTTAGCCCAGCTGCACCGCATTGGACCCCGGAACGTCGTCGTTGA
CDS sequence (LotjaGi2g1v0405900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAACAATTGCTGAAGAGATGGACCGTCGACAGTTACTGTACAGTCTTTTGATGCCGGTGATGAACCAATACGTGCC TGATTTGGACAAAGGCAAGGCACTGCACTTCCTGTTCATTAAAGCAGAGACCAAGACTCCTAGTGGGTTAGTGGCACGTC CAGTGCTCACGAGCTATTACAAGAGTGAACAGTTCAAGAAAAGACCATTTGACCCTTACAATGTTTTGACTAGCCCAAAT GAAGCAGTCCTCTGCTCCGATTCGTTTCAGAGCATGTATACACAGATGTTGTGTGGCCTCTACATGCGCCACGAGGTTCT CCGAGTCGGGGCGGTTTTCGCCTCCGGTCTTCTCAGAGCCATCCGGTTCCTCCAGCTCAATTGGGAAGAATTAGCCCATG ACATCTCCACCGGAACCCTAAATCCCAAAATCATTGAACCTTCCCTCAAGGAATGTATGTCCGGAATCATGAAACCGGAT CCTGAACTCGCTGATTTCATTGTAAAAGAGTGCTCAGGGGAGAATTGGGAGCGCATAATCCCCAGGATTTGGCCTAACAC CAAGTACCTCGATGTCATCGTCACCGGTGCCATGGCTCAGTACATCCCAACCCTTGATTACTACAGCGGTAACCTTCCGA AGCCGTGTACCATGTACGCGTCTTCAGAATGTTACTTTGGGCTTAACCTCAAGCCCATGGCTGAGCCTTCCGAGGTTTCA TACACTATCATGCCAAACATGGGGTACTTTGAATTCTTACCCCATGATGAGTCATCGAGTCACGTGACAAGCATGTTGTC ACGTGACTCTCCCCCTTGCCTGGTTGATATGGCCGACGTGGAAGAGGGAAAATACTATGAGCTCATTATTACAACATACT CCGGTCTTTGTCGATACCGTGTGGGTGACATCCTCCAGGTCACCGGTTTCCACAACGCGGACCCACAGTTCCGGTTCGTG CGGCGGAAGAATGTGCTTCTGAGCATTGATTCGGACAAAACAGACGAGTCAGAGCTTCAAAGAGCAATTGAAAATGCTGA GCAATTATTGAAGGAGTTCAAAACCAGTGTGGTTGAGTACACTAGCTTCGCTGATACCAAATCGATTCCGGGGCATTATG TAATTTACTGGGAGCTTCTAATGAAAGACTCGTCTTTCCCTCCAACGGGTGATGTGTTGGACAAGTGCTGTTTGGTTATG GAAGAGTCGTTGAACACGGTTTACAGGCAAGGAAGGAACGCTGATAATTCTATTGGACCGCTAGAGATACGAGTGGTGAA GAATGGCACGTTTGAGGAGCTAATGGACTACGCGATCTCAAGAGGCGCGTCGATTAACCAGTACAAGGTGCCAAGGTGCG TGAGCTTCACGCCCATAATGGAACTGCTTGATTCTAGGGTTGTTTCCTCTCATTTTAGCCCAGCTGCACCGCATTGGACC CCGGAACGTCGTCGTTGA
Protein sequence (LotjaGi2g1v0405900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPTIAEEMDRRQLLYSLLMPVMNQYVPDLDKGKALHFLFIKAETKTPSGLVARPVLTSYYKSEQFKKRPFDPYNVLTSPN EAVLCSDSFQSMYTQMLCGLYMRHEVLRVGAVFASGLLRAIRFLQLNWEELAHDISTGTLNPKIIEPSLKECMSGIMKPD PELADFIVKECSGENWERIIPRIWPNTKYLDVIVTGAMAQYIPTLDYYSGNLPKPCTMYASSECYFGLNLKPMAEPSEVS YTIMPNMGYFEFLPHDESSSHVTSMLSRDSPPCLVDMADVEEGKYYELIITTYSGLCRYRVGDILQVTGFHNADPQFRFV RRKNVLLSIDSDKTDESELQRAIENAEQLLKEFKTSVVEYTSFADTKSIPGHYVIYWELLMKDSSFPPTGDVLDKCCLVM EESLNTVYRQGRNADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKVPRCVSFTPIMELLDSRVVSSHFSPAAPHWT PERRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 482 | 482 | 1.1E-301 | – | |
| PANTHER | 1 | 482 | 482 | 1.1E-301 | ||
| Pfam | 1 | 455 | 455 | 1.4E-160 | ||
| Coils | 329 | 356 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0405900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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