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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0406200 |
| Transcript ID | LotjaGi2g1v0406200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lysine-rich arabinogalactan protein; TAIR: AT4G37450.2 arabinogalactan protein 18; Swiss-Prot: sp|Q9FPR2|AGP18_ARATH Lysine-rich arabinogalactan protein 18; TrEMBL-Plants: tr|A0A103YH17|A0A103YH17_CYNCS Uncharacterized protein; Found in the gene: LotjaGi2g1v0406200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90326776..90328873) extracted from Lotus japonicus Gifu genome v1.2.
CACCGTGGGCCCCAAATGGCGAAGCTTCTTTACCCCGTTGATCCAACGGCTAGTCCTGGCCCAACCCACCCTGGGACCCA CTTCTCACCAGATCAAATAACACCCGTTCGATCAATCATGTTCTGACACACATCAAACCACAGAGGATTTTTCTTTATAA ATCTCTCTGCAACACTTCACAAACCACCAATCTCACTCTCAACCAAAAATGGATCGGAACTCTGTGCTCTCCCTCGCTTT GATCTGCATTGTCGTTGCCGGCGTCGGAGGCCAGTCTCCTGCAGCCTCGCCGACCACCACTCCAGCCGTCACCACCACTC CTCCTGCTACAGCCCCTTCCACACAGCCAAAACCAACAACACCAGCACCGGTTGCTTCTCCAAAACCTTCATCACCAGCT TCACCAGCTTCTTCTCCCAATGCTGCAACCGTAACCCCTGTATCAGCTCCCCTAGCTTCACCTCCGTCTAAGGCCGCCGC TGCACCAGCTCCGGTGGCCAAAGCTCCGGCATCCACACCTCCGGCGGCTGTTCCGGTGAGCTCTCCACCACCGGCACCAG TTCCTGTTGCCTCTCCACCTGCTCCTGTTCCGGTGAGCTCTCCTCCTGCACCGGCGCCGACAACTCCCGCCCCTGCTGTG ACACCGACCGCTGAGGTCCCTGCTCCGGCTCCGAGCAAGTCAAAGAAGAAGGTGAAGAAGGGAAAGAAGCACGGTGCACC GGCTCCTTCACCGTTGCTAGGCCCTCCCGCACCTCCGGTTGGAGCTCCGGGACCTGACGACGCATTATCTCCTGGTCCAA CAGCGGTTGCTGCCGACGAGGTACATCTTCATTTTCTTCCTCTTCATGCTTTTTAATCTTTTGCTTTTCGTACTATTCAC ACTAGATCTGGAATTTACTAATGTTGTCTTAGATCTGAGAAATGGCATGGTGAGACATTGAGATATTTTAAGTTTGATAA AATGCAAATGTGATTTACATATCTCAATGTAACAACGGAGTTATTAGAATTTGACGCATTAAGTTTAACGGTACTTGAGA AGTAAATTGTGTCACTGGAAAATCAAACACACTTAGTTTACTTAATTTAGGTTTTTTCTTGTTTTAGCTGAAATTGGGAG TGACAGATTCCATTTTTCATTGAACTTAAATGTTGTTTGTTGTGGTGTGGCTATGGTAATAATGTATATCTTGCTGGCCA TCGTAATTGTTGATTATGTGTTTGTTGTGACAGAGCAAATTATTAATAGTTTAATACTAATATAGTAATATAGGTGAAAA ATTAATTGAGCACATTACTAGTATAGTTCAAAATTTAATTGAATTGATAGTGTGATCTGAAAATTCTGTGGTTTTCTATG TTACAGAGTGGAGCAGAGACCATCAGGTACTTGAAGATGGTGGTAGGAAGCTTAGCTTTGGGCTTGGCTGTTTTGATGTT CTAGAGAAGAGACACTATTATTACTGCTGTTGCTACGATCGATATTCTTGTATCATTTAGTTTCTTTTTTTGGGCCTGTC ATGGACTGAGATTAAATTTATTACCACCATTATTTCCTTGAAACTCTTATTATTAATTCTATATTGGTGATGTTTTTGTC AATATAGTACTCCCTCTGGTCCTATTTATAAGCATGAAAGAGAAGAAAAATCTTGGTCTTTTTTATAAGAACCAAATGAA AGTTTGAGCTATATTAATTAATTTTTCCAATGATGCCCTTATTAATTCTAACTTGTAAAATGTGTCTCATTAATTATTCT CTCTCTTTTCCACTTTCCAACACTAATAACAAAGGGTAGTTTTGGAAGTTCATTTTAATTTAAGACAAATTTAATGCATT TTATCTAGTTTAACTACATTTCTTAAACTATGTGAATTTTTTTTTATTGCTTATAAATATAAGACCTACTTGTTTTGTCT TGTCGTGCGTCTTTGGGTTTTACCTTGACAATTACAAAACATTGCTAGAATGGGTAAAGCACCGACGAGGTGATGCATTC CTATTTGTATTCTAGTTATTTTCTGTAAACTTTGTTCTATTTAGTTACTAAAGCTAGATGGAAAAAAACAAAAAACCTAT TGGGATTAAGAAAAATGC
CDS sequence (LotjaGi2g1v0406200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCGGAACTCTGTGCTCTCCCTCGCTTTGATCTGCATTGTCGTTGCCGGCGTCGGAGGCCAGTCTCCTGCAGCCTC GCCGACCACCACTCCAGCCGTCACCACCACTCCTCCTGCTACAGCCCCTTCCACACAGCCAAAACCAACAACACCAGCAC CGGTTGCTTCTCCAAAACCTTCATCACCAGCTTCACCAGCTTCTTCTCCCAATGCTGCAACCGTAACCCCTGTATCAGCT CCCCTAGCTTCACCTCCGTCTAAGGCCGCCGCTGCACCAGCTCCGGTGGCCAAAGCTCCGGCATCCACACCTCCGGCGGC TGTTCCGGTGAGCTCTCCACCACCGGCACCAGTTCCTGTTGCCTCTCCACCTGCTCCTGTTCCGGTGAGCTCTCCTCCTG CACCGGCGCCGACAACTCCCGCCCCTGCTGTGACACCGACCGCTGAGGTCCCTGCTCCGGCTCCGAGCAAGTCAAAGAAG AAGGTGAAGAAGGGAAAGAAGCACGGTGCACCGGCTCCTTCACCGTTGCTAGGCCCTCCCGCACCTCCGGTTGGAGCTCC GGGACCTGACGACGCATTATCTCCTGGTCCAACAGCGGTTGCTGCCGACGAGAGTGGAGCAGAGACCATCAGGTACTTGA AGATGGTGGTAGGAAGCTTAGCTTTGGGCTTGGCTGTTTTGATGTTCTAG
Protein sequence (LotjaGi2g1v0406200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDRNSVLSLALICIVVAGVGGQSPAASPTTTPAVTTTPPATAPSTQPKPTTPAPVASPKPSSPASPASSPNAATVTPVSA PLASPPSKAAAAPAPVAKAPASTPPAAVPVSSPPPAPVPVASPPAPVPVSSPPAPAPTTPAPAVTPTAEVPAPAPSKSKK KVKKGKKHGAPAPSPLLGPPAPPVGAPGPDDALSPGPTAVAADESGAETIRYLKMVVGSLALGLAVLMF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| PANTHER | 1 | 228 | 228 | 8.1E-59 | – | |
| PANTHER | 1 | 228 | 228 | 8.1E-59 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 25 | 25 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 25 | 8 | - | – | |
| MobiDBLite | 22 | 201 | 180 | - | – | |
| MobiDBLite | 23 | 41 | 19 | - | – | |
| PRINTS | 23 | 44 | 22 | 9.4E-11 | – | |
| Phobius | 26 | 229 | 204 | - | – | |
| MobiDBLite | 42 | 65 | 24 | - | – | |
| PRINTS | 45 | 61 | 17 | 9.4E-11 | – | |
| MobiDBLite | 66 | 81 | 16 | - | – | |
| PRINTS | 69 | 86 | 18 | 9.4E-11 | – | |
| PRINTS | 93 | 118 | 26 | 9.4E-11 | – | |
| MobiDBLite | 98 | 149 | 52 | - | – | |
| MobiDBLite | 173 | 190 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0406200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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