Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0407300 |
| Transcript ID | LotjaGi2g1v0407300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phototropic-responsive NPH3 family protein; TAIR: AT5G67385.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q66GP0|Y5738_ARATH BTB/POZ domain-containing protein At5g67385; TrEMBL-Plants: tr|A0A0R0HC97|A0A0R0HC97_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0407300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90462519..90465929) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTGGATCGTGGTCAAGGGAAAAAAACCACACCTGCTGCTATTGACTTGTCTCTGAAGAAGAAGGAGCTTCTTTCTAG TGCCATGAAAAGAACAAGTGAATGGTATGCTTATGTAAATGTTCTTCTGAAACTAATGCTTTGATACCTTTTGAGTTTCA AAGGTACTTAACCTGTTTGATAGAATTTCTGAAACACATGAGTTGTACTATTTGATTCCAGGATTTTTTCTCAGGAGATT CCAAGTGATGTCAGTGTTAAAGTTGGAGAAGCTACCTTTACATTGCATAAGGTAGTGAACCAATTCAAATATGTACTCGT TGCTGCATATATCAAACTAATTAGTCTGAGAATCATTGAAGTGTAGGATATCAATTTCTTACTCTTTCTAGTTGTCAACC AGTTGCTTAACCCAACTAAAAGCCAACGGAGGTCTTGAGTTGCTATCACATGGTGTCTTGTAACGCGAGTTCTCAAATTC CAATGCACTAAATGTAGTTTTCAATTGAAAACCAAACATGATTACCAATGTTTGTCTTAACATTCAACTTCCATTACAAT GTGTTGGAAAGTGTAATACCACTTTCTGAGAGAGAAAATGTGAAAGGGGATATTATTTGTTGCATGCCATTCTTTTTGTT CCCAACTCTTTTGCTGCTTGACTACAAATAGTACATGGAATAGGAAGTAATACTTACAAAATTGTTATTTTGGACATCAG CTGATATTGAATTCTTCTACATATATTTTAATGTTATTGCAGTTTCCATTAGTCTCCAAGTGTGGATACATTAGGAAACT CGTCTCGGAATCCAGTGATGCTGACATTACCTTGGTTGAACTCTCTGATGTTCCTGGTGGAGCAGAAGCATTTGAACTGG CAGCAAAATTCTGCTATGGGATAAACTTCGAAATAAGTGTTGAGAACATTGCTATCCTTCGCTGCGTGGCAGAATATCTT GAGATGACCGAGGACTTTTCAGTTGGAAACTTGGTGGGGAGGGCTGATGCATTCTTGAATGAAGTGGCACTCAAAACCAT CGCAGGGGCTGTGTCTATCTTACATGTTTCAGAAAACCTCCTTCCAATAGCCGAGAGAGCGAAATTGGTGAACCGAAGCA TCGATGCCATTGCATATATAGTTTGTAAGGAAAGCCAGTTCTGTGCATCAGGAAGAAGTGAAAGTGGCTCTGATGGAGTG GCATCTTCTACATCATCTCACCAGAGGCCAGTTGTTGATTGGTGGGCTGAAGATCTCACTGTCCTCAGAATTGACATTTT CCAAAGAGTTTTAATTGCAATGATGGCAAGAGGGTTTAAACAGTATGCTATTGGTCCCATTCTAATGCTCTATGCACAGA AATCTCTACGAGGTTTGGTGAGATGAGATCCCTCACTAAAAATATTCAAATGTTAAAAGTATGCATGGTTTTATGCATTG ATCATTACTTAATTCTTTTATGTCTCTCTCTTTTTTATTTCTTTGATTGGCAGGATATATTCGGAAAGGGAAGGAAGAAG ATTGAACCAAGACAAGAGCATGAAAAGAGGGTTGTTTTAGAGACTCTGGTGAGCCTTTTACCAAGGGAGAAGAATGCAAT GTCAGTAAGCTTTCTTTCTATGCTGCTTCGTGCGGCGATCTATCTTGAGACAACAGTTGCTTGCAGGCTTGATTTGGAGA AGAGGATGGCCATGCAGTTGGTACAGGCTGTTTTAGATGATCTTCTCATTCCTTCCTATTCATTTACTGGGGACACACTG TTTGATGTGGATACAGTGCTGAGGATCATGTCTAATTACCTTGAATCTCAACACCACTCAATCTACAATGAGGATGATGA ATACTTTTCTCCTTCACAAAGTGACATGGAGCGGGTTGGAAAGCTAATGGAAAACTACCTTGCAGAAATAGCAACTGATC GAAATTTATCAGTTCCGAAGTTCATCTCTCTGGCTGAATTAATTCCTGAACAATCAAGGCCAGCAGAAGATGGGATGTAT AGGGCCTTGGACATCTATCTAAAGGTGCACACTGCAACCTTTTCTTTTTTTATCAATTTATTTTTTGATATATTAACACA CTTTCTCTTCCTTTCCCTACATTATCTCTTCTAATCTCTCTTATTTTTTAATCACGTCGCTCATTATATTTCTCATTTCT CTATCTTATATTCCTATTTCTCTCGGGATATGGTTGGATTTGGCGTGTGAATAACTTTTTGTTCATATCAAATTAATCAT GCCACAAATTTAAACTGTACCAAGAAAATATTGTTTTTCTACTCCTGACATCTTGTTTGAGCATTAGGATCTCTCATGTC ACGGGATTAAAATCTTTTGTCCCAGAAACGTGTCTCATTATCCTTTCCAATAATAAAATTTTGACATATCAATTAAAAAC CACCTGTAAGTTTGTAATTGCCCCACTCATATCATTTTTAATTGACATGGTGAGATATTATTGGTTGAATAGGAAATTGA AACATCATTTGAAGACAACAGATCTTGATCCCAGGTCACTTAACATTGTCATTTGCAACTTTGTGACTCTCTCTATCTTC ATAAATATTTAGAAAGAGATAAACACAAAATTTCAACAAAATCCCCAAATGAGAGAATTCTGATCCTTGTTTGAACAACA GAGAAAACACTCACATTTTACTAGTCAAGATTAAACACCTATTTCCTACAGCACATTCTTCCGGGTTTCAGCTTTTAACA TAATTTATTTGCTACATTATACAGTTGCATTCACAACAGTATTGCAATCATTCAGATTTAATTGTATTGCAATTTTGGTA TAGATTTCTTTAACTTGAAGTTATTATGAATTACTGCTGATATGGTTGGAATTGAGAATTCTCAGGCTCATCCCAATCTA AGTGACATGGAGAGAAAGAAAGTTTGCAGTGTGATGGACTGCCAGAAGTTATCCCGAGAGGCCTGTGCACATGCTGCTCA AAATGACCGGCTTCCTGTCCAAACTGTGGTTCAAGTTCTCTATTATGAACAACAGAGACTTCGTGATGCTATGAATGGCA GTGCAAGTGGGGAAGCTCCTTCAGTTCCCGCCAAGCTCAATGTATTCTCCAGTGATCTTCATCCGGTCTCAAATGAGCTT ACCAGCTTAAAAAGAGAAAATGAAGATCTGAAACTAGAGCTAGTGAAATTGAAAATGAGACTAAAAGAGATTGAGAACTC CACAATTAAATCAGGAGCTAACAGTCCAGTTGTAAATGCTTCACCTTCTGGCTCTGCTGATAAGCCTCCCCTGCCTCGGA GACCATCATTCATAAGCTCAGTATCCAAAAAACTTGGACGGCTCTCTCCATTCCCTCGTGCTGATGGTGTTTCACCTTTT GCCAAAGGTCGCACAAAGCCAAATAAGGATCGACGCCACTCCATTTCTTGA
CDS sequence (LotjaGi2g1v0407300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGATCGTGGTCAAGGGAAAAAAACCACACCTGCTGCTATTGACTTGTCTCTGAAGAAGAAGGAGCTTCTTTCTAG TGCCATGAAAAGAACAAGTGAATGGATTTTTTCTCAGGAGATTCCAAGTGATGTCAGTGTTAAAGTTGGAGAAGCTACCT TTACATTGCATAAGGTAGTGAACCAATTCAAATATGTACTCGTTTTTCCATTAGTCTCCAAGTGTGGATACATTAGGAAA CTCGTCTCGGAATCCAGTGATGCTGACATTACCTTGGTTGAACTCTCTGATGTTCCTGGTGGAGCAGAAGCATTTGAACT GGCAGCAAAATTCTGCTATGGGATAAACTTCGAAATAAGTGTTGAGAACATTGCTATCCTTCGCTGCGTGGCAGAATATC TTGAGATGACCGAGGACTTTTCAGTTGGAAACTTGGTGGGGAGGGCTGATGCATTCTTGAATGAAGTGGCACTCAAAACC ATCGCAGGGGCTGTGTCTATCTTACATGTTTCAGAAAACCTCCTTCCAATAGCCGAGAGAGCGAAATTGGTGAACCGAAG CATCGATGCCATTGCATATATAGTTTGTAAGGAAAGCCAGTTCTGTGCATCAGGAAGAAGTGAAAGTGGCTCTGATGGAG TGGCATCTTCTACATCATCTCACCAGAGGCCAGTTGTTGATTGGTGGGCTGAAGATCTCACTGTCCTCAGAATTGACATT TTCCAAAGAGTTTTAATTGCAATGATGGCAAGAGGGTTTAAACAGTATGCTATTGGTCCCATTCTAATGCTCTATGCACA GAAATCTCTACGAGGTTTGGATATATTCGGAAAGGGAAGGAAGAAGATTGAACCAAGACAAGAGCATGAAAAGAGGGTTG TTTTAGAGACTCTGGTGAGCCTTTTACCAAGGGAGAAGAATGCAATGTCAGTAAGCTTTCTTTCTATGCTGCTTCGTGCG GCGATCTATCTTGAGACAACAGTTGCTTGCAGGCTTGATTTGGAGAAGAGGATGGCCATGCAGTTGGTACAGGCTGTTTT AGATGATCTTCTCATTCCTTCCTATTCATTTACTGGGGACACACTGTTTGATGTGGATACAGTGCTGAGGATCATGTCTA ATTACCTTGAATCTCAACACCACTCAATCTACAATGAGGATGATGAATACTTTTCTCCTTCACAAAGTGACATGGAGCGG GTTGGAAAGCTAATGGAAAACTACCTTGCAGAAATAGCAACTGATCGAAATTTATCAGTTCCGAAGTTCATCTCTCTGGC TGAATTAATTCCTGAACAATCAAGGCCAGCAGAAGATGGGATGTATAGGGCCTTGGACATCTATCTAAAGGCTCATCCCA ATCTAAGTGACATGGAGAGAAAGAAAGTTTGCAGTGTGATGGACTGCCAGAAGTTATCCCGAGAGGCCTGTGCACATGCT GCTCAAAATGACCGGCTTCCTGTCCAAACTGTGGTTCAAGTTCTCTATTATGAACAACAGAGACTTCGTGATGCTATGAA TGGCAGTGCAAGTGGGGAAGCTCCTTCAGTTCCCGCCAAGCTCAATGTATTCTCCAGTGATCTTCATCCGGTCTCAAATG AGCTTACCAGCTTAAAAAGAGAAAATGAAGATCTGAAACTAGAGCTAGTGAAATTGAAAATGAGACTAAAAGAGATTGAG AACTCCACAATTAAATCAGGAGCTAACAGTCCAGTTGTAAATGCTTCACCTTCTGGCTCTGCTGATAAGCCTCCCCTGCC TCGGAGACCATCATTCATAAGCTCAGTATCCAAAAAACTTGGACGGCTCTCTCCATTCCCTCGTGCTGATGGTGTTTCAC CTTTTGCCAAAGGTCGCACAAAGCCAAATAAGGATCGACGCCACTCCATTTCTTGA
Protein sequence (LotjaGi2g1v0407300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVDRGQGKKTTPAAIDLSLKKKELLSSAMKRTSEWIFSQEIPSDVSVKVGEATFTLHKVVNQFKYVLVFPLVSKCGYIRK LVSESSDADITLVELSDVPGGAEAFELAAKFCYGINFEISVENIAILRCVAEYLEMTEDFSVGNLVGRADAFLNEVALKT IAGAVSILHVSENLLPIAERAKLVNRSIDAIAYIVCKESQFCASGRSESGSDGVASSTSSHQRPVVDWWAEDLTVLRIDI FQRVLIAMMARGFKQYAIGPILMLYAQKSLRGLDIFGKGRKKIEPRQEHEKRVVLETLVSLLPREKNAMSVSFLSMLLRA AIYLETTVACRLDLEKRMAMQLVQAVLDDLLIPSYSFTGDTLFDVDTVLRIMSNYLESQHHSIYNEDDEYFSPSQSDMER VGKLMENYLAEIATDRNLSVPKFISLAELIPEQSRPAEDGMYRALDIYLKAHPNLSDMERKKVCSVMDCQKLSREACAHA AQNDRLPVQTVVQVLYYEQQRLRDAMNGSASGEAPSVPAKLNVFSSDLHPVSNELTSLKRENEDLKLELVKLKMRLKEIE NSTIKSGANSPVVNASPSGSADKPPLPRRPSFISSVSKKLGRLSPFPRADGVSPFAKGRTKPNKDRRHSIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 623 | 610 | 2.6E-284 | – | |
| PANTHER | 14 | 623 | 610 | 2.6E-284 | ||
| Gene3D | 18 | 140 | 123 | 6.2E-8 | – | |
| SUPERFAMILY | 26 | 138 | 113 | 6.91E-12 | ||
| CDD | 35 | 148 | 114 | 1.22045E-37 | – | |
| ProSiteProfiles | 227 | 501 | 275 | 90.837 | ||
| Pfam | 227 | 477 | 251 | 2.0E-90 | ||
| Coils | 535 | 562 | 28 | - | – | |
| MobiDBLite | 566 | 631 | 66 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0407300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…