Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi2g1v0409600
Transcript ID	LotjaGi2g1v0409600.1
Related isoforms 1	LotjaGi2g1v0409600.2
Lotus japonicus genome version	Gifu v1.2
Description	Adenylyl-sulfate kinase; TAIR: AT2G14750.1 APS kinase; Swiss-Prot: sp\|O49204\|KAPS_CATRO Adenylyl-sulfate kinase, chloroplastic; TrEMBL-Plants: tr\|A0A0B2PZ10\|A0A0B2PZ10_GLYSO Adenylyl-sulfate kinase; Found in the gene: LotjaGi2g1v0409600
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:90648886..90653178) extracted from Lotus japonicus Gifu genome v1.2.

CGAGTCAATGACCGAGCCGAGTCTTAAAACACTGCTTTGTGGTGTTCGCTCGCAAGTCGCAAGCCTTAACTACTCTCAAT TTCTCTAATGTGTCCACCATTATCAAAGCCCTAATGGGAGGACCCTTAAACTGAGTCACCATTCTAATCCACAAAACATC TTACCTAAAATATAAGGACAAAGTTTATCATTACTAACAACTCGTCATGGCTCCATGTTGCCGGTCCAATCTAAGAATGT ACCTATCCCCCCCTGTTTTATCAGAAACCCCTGTTTTATAAATTATTGACACAAGCACCATTTGTCTTTTTATTTGATTT GATACAATCAATCAAAGAATAATGAGATACAGGTGTCAATACAAGTAAGCAGATCCATGGTGATTACTGAGGTGGAGATC CCACTCAACTCAAATAAGCCTCATTCCCCAATCCGCCACCGTCACTTTCCACTTTATCGTGACCACATAGGATACGTTGT CGCAGCTCCCTCTGCCACCACCACTTGACAGCGAACCCAACTTTGTCTCTGTGCTGCTTCATCTTCTTCTTCACTTGCCT CATATAGGACCACACTCAAACCCATTCTTAAGTTCCACTAGGATTGAGTAATTAATTAATTATAAATTAAAATTCTCCAA AATTATTTACTTTACTACTCTACTACTTGAGCAACTATCATCACGTACACTGAACACTATCTGTAACAGAAAACGGTTAC GGACCCTGAACAGCTTCAATTTCATCACCGACTTCAATTCTCCTTCAAACACGATCTTCACGTGGCTGAGATGACCACGT CCTTACGAGCACTGCGTCCACCGAGCGGCGGTGGAACTTTCCAGAACGTCGTCGAATGCGGGCATTCGGCGGTGGAGAAG AAGTTAGGGTTTGTGAAGCTCTCCGGGTTCAATGCCGTTGGATTAGTCTGTAGTCGTAGAAGCTTGTTGAAGCCGATTAT GGCGACGGAGGGCCATGATGCTTCTTTGGTCGATGACGGTGGTTCTAAACACCAGGGGATTTCTGTGAAGATAACGACAG AGAAAGAACCTGACTCGGTTTTGAACAATCACTCTGCTGCTGCTGCATTTTCTGGTACTCTCAGATTCTATCAGATCTGG AATCTTGTTTGTTTATTCATGTTGCTATTTTACTATTGTTTCCCCATTGTAAAATGGTGATATGTTCAACGTGTTAACCA TAAAGAAACCTTTAAAGATTGGGGAATGATCTGATTAATCATGCAAGGGAATATTCTTATGATAGTGGTGTCTAATCTCT AGGAACTGAGATTCTGTCCAGCTAAACACTCAACTTGAAACCTGTGCATCTATCTGTTTACCGATTCCCTTTAAATATAG AGTTAGCGTAGTTATGATTCAAATCTTTGACAAGTTATTGTTTAGCTAGGTAAAAATCTCTGCGATATGTCGAATATTGG GAATTCAACCAACATTTTGTGGCATGAATGTCCAGTCCAGAAGCATGATAGAGAGCAACTACTTCAGCAAAAAGGTTGCG TTGTTTGGTTAACTGGTCTCAGTGGTTCAGGTTTGTGATATTCAGTTTACTTTTAGATAGTCACTGTTTCTGAATGTTTG CTTCAATTCATTGATGGCAAGCTATAATAAGCACACAATTGTTTTAAATAATGAACTCTTGGCTTCCTTTTATCAGTCTC AAATTGCATGCACCTGCAAAAGTGGTGAACATTCATTTTGGTATATGCTTCTTTTCTCATGTAGTTGTATAGAAGTTAAA ACATTGCATCTTGTTTCCTATATTCAATTAGCCGCTACATCTCTTCCCTTTCTCCTAGTTTCAGCTTCTTTTCTCTGACC TATTCAATCACAGCTGATGATTTTTTTGTCTAATAGGAGTGGTACACACACACACACACTAGTAAACCTGCAACATAACA AGTATATATAAAAAATGGTGCAGACTTTCAATTTTTTAGTTTATGCATAATGTTGACCAGTTGGTATATGCGTGTGAAAG AGGGTAAAATACATAAGTACTCAATGCTAAATATCGATCCAGCATAAGCACTTTAAGACAGATCACTTACATCTATCATT ATTCCATCGGACAGTTAGTTTACTTCTATCTCTTATATCTGAACAATGCTGTCTCACTAAATGCCCTTAGTAAGTTAGTA TAATGTTGCACTGTTTTTTTGTTTTTCCTTTGAACTGACATCTATATTTTTATTGTCAAGCTCATCTTTTAGTTTCTGAC TTTTAGATAGTTTTAGTTGCACTTACTCATGTGAAATCAGAGTTGAACTTGTTTTTTCACAAAGAATGAAAATATGAACT TGTTTTAGCTATAGATCTCCAACCACATCAAAATATGAATATTTTGAAGTACAGGATGGCCTCTCCTGGAGCAGCTTTAC AATTATAATTTTCACTGCTGTTGAACATTTCCCAATGGAAAACCAAGAAAATGAAAGCAATAATGTTTAGTTTCATTTGG ATATGAGGATATTCCCTTACCTTTAGCTAATAGATACACAATACACGCACTAATTCCTTGTCTCTCTGATTAATTGGCCT TGTCAATTGATTTCAGGGAAAAGTACTCTGGCATGTGCTTTGAGTCGAAGCTTGCACTCCAGAGGGAAGTTGACTTATAT CCTCGATGGTGACAATATTCGACATGGTCTAAACCGTGATCTTAGTTTTAGAGCAGAAGATCGTTCAGAGAACATCCGCA GGATTGGTGAGCTGCTGCATATATACCTAGCAAATACAAAAGTTCTTCCTTCAATTGTCTACACTTTATTTTATATTATC ATTAATAGTCAAACATCAAATCTGATCATTTTCAGGTGAGGTAGCAAAACTCTTGGCAGATGCAGGTGTAATTTGCATCG CGAGTTTAATATCGCCCTACCAAAAGGACAGGGACGCTTGCCGAGCTCTACTGCCAGAAGGAGATTTCATTGAGGTAAAA TTTTGATTTAGTGAACCAAATTATGTTGGTAGTTTGGCATAAATGCTAACAATAATGAACACTAAGGTTATTGAACAAGA CATGAGGTTTCATGCCAATTACAACCCTGAACCCACACATGATGTAGGTTTTCTTAGACGTACCACTAAATGTGTGCGAA GCAAGGGACCCAAAGGGACTCTACAAGCTTGCTCGAACAGGAAAGATCAAAGGTATCCTTTTTCTTTTTTAAATTGAGGC TTTATCAACTCGGTATCTTCTTGGTATTATGTGTATTTGGCTGAAGTTGTTATTCAACTATATTAGCTTCAGCAGTTTAG CTATGTAAATTGTCATTTCTCTTTTTGCTACTGATCAAATTACGCATCAGTATGGATTTATCTATTTGAAATTCTGCAGG TTTTACAGGGATAGATGATCCATATGAACCCCCAAGTAGTTGTGAGGTATGTATTTGTTGCATTGCACAAAAGTGTGTTG TTAAAGAGGAATAAATTGAACAAGATATAAACAAGATATCCGAGTGCTTCAGCTGCTTTTCTTTTTGTCATACTTCTGCT CAACTTCAGTTAAACACTTCAATTGATTACGCTTTCTCATTCTCCTGCAGATAGTTGTACAGCAAAAAGGAAGTAATTGT ATGTCTCCGAGTGATACGGCAGAAATAGTAATATCCTACTTGGATAAGAATGGTTACCTGCGAGTCTGATTTTGCTTGAA CGAGTTCGGGGTCTTGTTTGTTGTGGGTATATATATTGTATGCAACATAGTCTGAGAGCTCATAAAAAAACTGCTCCATC CAGCACCAAGGTAGTCATTGTTCCCGATCCATCTGGCTCCATCTAGTAGCAAGGCGCGTAAAAGTTGCTCGTTTCAGTCA TTGTATTTATGAATTATGACTTCATCCTATAGGTAAAAATAAATGAGGTGAATCTATGAGGATGGAGTTGGTACGGATTG GTGTCATGGTATAGGAAAAAGAAAGTGAGACTTTTGTATATGATTCTTATCTTTTAGCAAATTGATGTTTCAGTGGAATG TGTAGTACCTGTGAATATTTGTTTACTAATACATGTCCTGCTGCAAAAGCCGTAATCCGCAGCTTGTCAAGCGTAATACT AGGTCTTGGAAGCGTTGTCCTTAACAATTTTTGCTTCAATACCCTATGCTGGCCAGCTGATACCCTTAGTTAAAAGGTAT AGATTAAGATGCTGTTACATATCTCTGTAAATGGTTCTCCAAGGAGGCAGGGATGCCAATGTGGCAACAACAATGACGAT GGTAGAAAGTGTAGTCAAAGCTTCCCTGTGCTTGAATTTTCCTAAATACACAG

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0409600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACCACGTCCTTACGAGCACTGCGTCCACCGAGCGGCGGTGGAACTTTCCAGAACGTCGTCGAATGCGGGCATTCGGC GGTGGAGAAGAAGTTAGGGTTTGTGAAGCTCTCCGGGTTCAATGCCGTTGGATTAGTCTGTAGTCGTAGAAGCTTGTTGA AGCCGATTATGGCGACGGAGGGCCATGATGCTTCTTTGGTCGATGACGGTGGTTCTAAACACCAGGGGATTTCTGTGAAG ATAACGACAGAGAAAGAACCTGACTCGGTTTTGAACAATCACTCTGCTGCTGCTGCATTTTCTGGTAAAAATCTCTGCGA TATGTCGAATATTGGGAATTCAACCAACATTTTGTGGCATGAATGTCCAGTCCAGAAGCATGATAGAGAGCAACTACTTC AGCAAAAAGGTTGCGTTGTTTGGTTAACTGGTCTCAGTGGTTCAGGGAAAAGTACTCTGGCATGTGCTTTGAGTCGAAGC TTGCACTCCAGAGGGAAGTTGACTTATATCCTCGATGGTGACAATATTCGACATGGTCTAAACCGTGATCTTAGTTTTAG AGCAGAAGATCGTTCAGAGAACATCCGCAGGATTGGTGAGGTAGCAAAACTCTTGGCAGATGCAGGTGTAATTTGCATCG CGAGTTTAATATCGCCCTACCAAAAGGACAGGGACGCTTGCCGAGCTCTACTGCCAGAAGGAGATTTCATTGAGGTTTTC TTAGACGTACCACTAAATGTGTGCGAAGCAAGGGACCCAAAGGGACTCTACAAGCTTGCTCGAACAGGAAAGATCAAAGG TTTTACAGGGATAGATGATCCATATGAACCCCCAAGTAGTTGTGAGATAGTTGTACAGCAAAAAGGAAGTAATTGTATGT CTCCGAGTGATACGGCAGAAATAGTAATATCCTACTTGGATAAGAATGGTTACCTGCGAGTCTGA

Download CDS Sequence

Protein sequence (LotjaGi2g1v0409600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTTSLRALRPPSGGGTFQNVVECGHSAVEKKLGFVKLSGFNAVGLVCSRRSLLKPIMATEGHDASLVDDGGSKHQGISVK ITTEKEPDSVLNNHSAAAAFSGKNLCDMSNIGNSTNILWHECPVQKHDREQLLQQKGCVVWLTGLSGSGKSTLACALSRS LHSRGKLTYILDGDNIRHGLNRDLSFRAEDRSENIRRIGEVAKLLADAGVICIASLISPYQKDRDACRALLPEGDFIEVF LDVPLNVCEARDPKGLYKLARTGKIKGFTGIDDPYEPPSSCEIVVQQKGSNCMSPSDTAEIVISYLDKNGYLRV

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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR11055 View details on PTHR11055 Search for proteins/transripts with this domain View external data on PTHR11055	23	313	291	6.0E-165	–
PANTHER	PTHR11055:SF42 View details on PTHR11055:SF42 Search for proteins/transripts with this domain View external data on PTHR11055:SF42	23	313	291	6.0E-165	–
Gene3D	G3DSA:3.40.50.300 View details on G3DSA:3.40.50.300 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.300	113	314	202	5.4E-83	–
TIGRFAM	TIGR00455 View details on TIGR00455 Search for proteins/transripts with this domain View external data on TIGR00455	119	289	171	2.5E-75	IPR002891 Show description in modal box View details on IPR002891 Search for proteins/transripts with this domain View on EBI InterPro Service
Hamap	MF_00065 View details on MF_00065 Search for proteins/transripts with this domain View external data on MF_00065	135	310	176	36.043	IPR002891 Show description in modal box View details on IPR002891 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF52540 View details on SSF52540 Search for proteins/transripts with this domain View external data on SSF52540	135	308	174	2.95E-35	IPR027417 Show description in modal box View details on IPR027417 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01583 View details on PF01583 Search for proteins/transripts with this domain View external data on PF01583	136	288	153	9.3E-72	–
CDD	cd02027 View details on cd02027 Search for proteins/transripts with this domain View external data on cd02027	139	285	147	1.18021E-99	IPR002891 Show description in modal box View details on IPR002891 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0000103 View details of GO:0000103 AmiGO InterPro QuickGO	Biological process	Sulfate assimilation	The pathways by which inorganic sulfate is processed and incorporated into sulfated compounds.	Subterm of View details of GO:0006790
GO:0004020 View details of GO:0004020 AmiGO InterPro QuickGO	Molecular function	Adenylylsulfate kinase activity	Catalysis of the reaction: ATP + adenylylsulfate = ADP + 3'-phosphoadenosine 5'-phosphosulfate.	Subterm of View details of GO:0016301 View details of GO:0016773
GO:0005524 View details of GO:0005524 AmiGO InterPro QuickGO	Molecular function	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.	Subterm of View details of GO:0008144 View details of GO:0032559 View details of GO:0035639

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0409600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi2g1v0409600.1