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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0410700 |
| Transcript ID | LotjaGi2g1v0410700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heptahelical transmembrane protein 4; TAIR: AT4G37680.3 heptahelical protein 4; Swiss-Prot: sp|Q9SZG0|HHP4_ARATH Heptahelical transmembrane protein 4; TrEMBL-Plants: tr|V7CII3|V7CII3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0410700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90747656..90750019) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCCGTGAAGATTCCGTTGCATTGATGGAGAACCAACGGGAATCTTCTGGAAGGGAAGGGAAAGGGAAACGGTTGTG GAAGAAGGTGAAGTACCAGCTCGTTGAGTATCACTCGTTGCCTGCTTTCTTGCGAGACAACGAGTACATTCTAGGTCATT ATCGATCTGAATGGCCTATGAAGCAGGTTTTGCTCAGCATCTTCACCATCCACAATGAAACCCTCAATGTTTGGACGTAA GTCTTCAAACTTTGTAATTCAATTCAATAGATTCCTTATTCCAATGAATATTCCTTGATTTCCCTCCTATAAATTGATAC TTGTAACTATATGTAGGTTGTAATTAGCTTTCTTTAGTTTCTTATATGATTTAGGGTCAGCTTATTTTTGCATCCAAAGA TTTTCTAACATGCATACTTTATGAGATTTTGACTGTTTTATGAAAGGGCAATGCACTAAGCTCCCACTATCAATAACTGT GTTGAAGCAGGAAGGCAGTTTACCCAATCAGAGCTCTAGAAAATCAGTTCAAAGACCATCAATATCAATTTTGTTTCCTT TATAGTATTTATTTAAGATCAAATTGTTATTTTCTATTTTTCATTTTGAGTAGGGTTTATCCTGTTAAATAGATCTTTTG ACCCTTTGAAAGAAAAATTTAAGCAAGATTGTCCATTAGTGAATTATATTAAGTTAGACTCCCCTATTTTCTTTATTTGT TGTTTTTTTTTACCCTTTCCCCTGTCTCTCAGGTAGTTGACTTAAATATTATGCCAAATGCCATTAAGATTTTGACTATA TATTTTTTGTTTCTCATTCTTTGTCTCTTTTGTAAGTATATAGGCCAGACGGTGACATGAGTCATGAGCGATGTTCGGTT CAAAGAAATATGCATATTTTGAGTTTGTACTTTTTCTTGTTCTCGATCATAAAATGATAAAATGTTATTTCGTGCAGACA TTTGATTGGGTTCTTCCTATTTCTAGCATTGACCATATACACTGCCATGCAAGTTCCAAATGTTGTAGATCTCGATTCAC TGCATCATTTTCCGGACATCCTCAAGAAGGTAGACTTGCACAAATTACAATCAGAACTTTTGATGTGCCTACCTTCCATG CCTGATTTGCACAGACTCAGGGACGGAATCTCAAATTGGCATATTAAAGAACTTCTGTATAATTGTTTGCCTGTAAGCTT TTCCACTGGCAACCAGACTGATGTTTGTGTTCTGGTAATTACTTTGCAACTGACTACTAGTCCCACTCCTCTTTTTTCCC CTTTGTTATTAGGGGAGAGGCAGTGTTGTGTTAAACTAGCTCTCTCAATGATATATCAGCACGGTTTATTTTCTCTGTTT CTATTCTTGTGGATTTCTATCAGCAATACTGATCGATAAACAATTTGCTGGAGTACAAATTATATGAGATGTATATTTCA TCTGGGTTGGATAGAGTAAATGATATGGTAGAACAAATTCTAAAACTAAATCTTAAGAGTTAAACATGGTAGAGGAAAAA CTACTGAATGATGAATGTATAATGTCATTTTGTGAATAATGTCCTATGCCTTCGTTCAGGATTAAATATTTCATGTTTAT CAATTCAAAGTTTTTCTGTACCTTTGTTTTATTCTTCTTTTTCCATTGATGCTTGACTAGATTTTGGGAGACAATGCAAC TTTGCTTATTTTTTTGTTGATTGTATGCAGCATAATGTAAAGGAGGACCTGGCAAACATAATAGCACCATTGATGATTAG ACCAATTACAAGGTGGCCATTTTTTGTATTTCTAGGGGGTGCCATGTTTTGCTTGCTGGCTAGCAGTTTTTGCCATCTCC TCTCTTGCCACTCTGAGCGCGTATCATACATTATGTTGAGGCTTGACTATGCTGGAATTGCAGCCCTGATAGCCACCTCT TTCTATCCTCCAGTATATTACTCTTTTATGTGTTATCCATTTTTCTGCAACCTTTACTTGGGCTTTATTACTCTATTAGG TATAGCCACCATCTTAGCTTCTCTCCTTCCGGTCTTTCAAACTCCAGAATTCCGCACCTTCCGTGCATCCCTCTTTTTTG GAATGGGATTGTCTGGTGCAGGACCAATTCTGCACAAGCTTTTTCTCTTCTGGGGCGAACCTGAGGTATTCCATACAACT GGTTATGAGATTCTGATGGGTGCTCTCTATGGACTTGGAGCACTGGTTTATGCCACTAGGATTCCAGAACGATGGATGCC TGGGAAATTTGACATTGCCGGGCACAGTCACCAATTGTTTCATGTATTAGTTGTGGCTGGGGCTTATACTCATTATCGCG CAGGGTTGGTTTACCTCAGGTGGCGCGACCTTCGAGGCTGTTGA
CDS sequence (LotjaGi2g1v0410700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCCGTGAAGATTCCGTTGCATTGATGGAGAACCAACGGGAATCTTCTGGAAGGGAAGGGAAAGGGAAACGGTTGTG GAAGAAGGTGAAGTACCAGCTCGTTGAGTATCACTCGTTGCCTGCTTTCTTGCGAGACAACGAGTACATTCTAGGTCATT ATCGATCTGAATGGCCTATGAAGCAGGTTTTGCTCAGCATCTTCACCATCCACAATGAAACCCTCAATGTTTGGACACAT TTGATTGGGTTCTTCCTATTTCTAGCATTGACCATATACACTGCCATGCAAGTTCCAAATGTTGTAGATCTCGATTCACT GCATCATTTTCCGGACATCCTCAAGAAGGTAGACTTGCACAAATTACAATCAGAACTTTTGATGTGCCTACCTTCCATGC CTGATTTGCACAGACTCAGGGACGGAATCTCAAATTGGCATATTAAAGAACTTCTGTATAATTGTTTGCCTGTAAGCTTT TCCACTGGCAACCAGACTGATGTTTGTGTTCTGCATAATGTAAAGGAGGACCTGGCAAACATAATAGCACCATTGATGAT TAGACCAATTACAAGGTGGCCATTTTTTGTATTTCTAGGGGGTGCCATGTTTTGCTTGCTGGCTAGCAGTTTTTGCCATC TCCTCTCTTGCCACTCTGAGCGCGTATCATACATTATGTTGAGGCTTGACTATGCTGGAATTGCAGCCCTGATAGCCACC TCTTTCTATCCTCCAGTATATTACTCTTTTATGTGTTATCCATTTTTCTGCAACCTTTACTTGGGCTTTATTACTCTATT AGGTATAGCCACCATCTTAGCTTCTCTCCTTCCGGTCTTTCAAACTCCAGAATTCCGCACCTTCCGTGCATCCCTCTTTT TTGGAATGGGATTGTCTGGTGCAGGACCAATTCTGCACAAGCTTTTTCTCTTCTGGGGCGAACCTGAGGTATTCCATACA ACTGGTTATGAGATTCTGATGGGTGCTCTCTATGGACTTGGAGCACTGGTTTATGCCACTAGGATTCCAGAACGATGGAT GCCTGGGAAATTTGACATTGCCGGGCACAGTCACCAATTGTTTCATGTATTAGTTGTGGCTGGGGCTTATACTCATTATC GCGCAGGGTTGGTTTACCTCAGGTGGCGCGACCTTCGAGGCTGTTGA
Protein sequence (LotjaGi2g1v0410700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAREDSVALMENQRESSGREGKGKRLWKKVKYQLVEYHSLPAFLRDNEYILGHYRSEWPMKQVLLSIFTIHNETLNVWTH LIGFFLFLALTIYTAMQVPNVVDLDSLHHFPDILKKVDLHKLQSELLMCLPSMPDLHRLRDGISNWHIKELLYNCLPVSF STGNQTDVCVLHNVKEDLANIIAPLMIRPITRWPFFVFLGGAMFCLLASSFCHLLSCHSERVSYIMLRLDYAGIAALIAT SFYPPVYYSFMCYPFFCNLYLGFITLLGIATILASLLPVFQTPEFRTFRASLFFGMGLSGAGPILHKLFLFWGEPEVFHT TGYEILMGALYGLGALVYATRIPERWMPGKFDIAGHSHQLFHVLVVAGAYTHYRAGLVYLRWRDLRGC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 74 | 74 | - | – | |
| PANTHER | 11 | 388 | 378 | 3.3E-196 | ||
| PANTHER | 11 | 388 | 378 | 3.3E-196 | – | |
| Pfam | 68 | 373 | 306 | 3.8E-70 | ||
| Phobius | 75 | 96 | 22 | - | – | |
| TMHMM | 77 | 99 | 23 | - | – | |
| Phobius | 97 | 194 | 98 | - | – | |
| TMHMM | 195 | 217 | 23 | - | – | |
| Phobius | 195 | 217 | 23 | - | – | |
| Phobius | 218 | 228 | 11 | - | – | |
| Phobius | 229 | 247 | 19 | - | – | |
| TMHMM | 229 | 251 | 23 | - | – | |
| Phobius | 248 | 258 | 11 | - | – | |
| TMHMM | 255 | 277 | 23 | - | – | |
| Phobius | 259 | 280 | 22 | - | – | |
| Phobius | 281 | 291 | 11 | - | – | |
| TMHMM | 290 | 312 | 23 | - | – | |
| Phobius | 292 | 312 | 21 | - | – | |
| Phobius | 313 | 317 | 5 | - | – | |
| TMHMM | 317 | 339 | 23 | - | – | |
| Phobius | 318 | 339 | 22 | - | – | |
| Phobius | 340 | 359 | 20 | - | – | |
| TMHMM | 360 | 382 | 23 | - | – | |
| Phobius | 360 | 382 | 23 | - | – | |
| Phobius | 383 | 388 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi2g1v0410700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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