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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0410700 |
| Transcript ID | LotjaGi2g1v0410700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heptahelical transmembrane protein 4; TAIR: AT4G37680.3 heptahelical protein 4; Swiss-Prot: sp|Q9SZG0|HHP4_ARATH Heptahelical transmembrane protein 4; TrEMBL-Plants: tr|V7CHF5|V7CHF5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0410700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90747679..90750019) extracted from Lotus japonicus Gifu genome v1.2.
ATTGATGGAGAACCAACGGGAATCTTCTGGAAGGGAAGGGAAAGGGAAACGGTTGTGGAAGAAGGTGAAGTACCAGCTCG TTGAGTATCACTCGTTGCCTGCTTTCTTGCGAGACAACGAGTACATTCTAGGTCATTATCGATCTGAATGGCCTATGAAG CAGGTTTTGCTCAGCATCTTCACCATCCACAATGAAACCCTCAATGTTTGGACGTAAGTCTTCAAACTTTGTAATTCAAT TCAATAGATTCCTTATTCCAATGAATATTCCTTGATTTCCCTCCTATAAATTGATACTTGTAACTATATGTAGGTTGTAA TTAGCTTTCTTTAGTTTCTTATATGATTTAGGGTCAGCTTATTTTTGCATCCAAAGATTTTCTAACATGCATACTTTATG AGATTTTGACTGTTTTATGAAAGGGCAATGCACTAAGCTCCCACTATCAATAACTGTGTTGAAGCAGGAAGGCAGTTTAC CCAATCAGAGCTCTAGAAAATCAGTTCAAAGACCATCAATATCAATTTTGTTTCCTTTATAGTATTTATTTAAGATCAAA TTGTTATTTTCTATTTTTCATTTTGAGTAGGGTTTATCCTGTTAAATAGATCTTTTGACCCTTTGAAAGAAAAATTTAAG CAAGATTGTCCATTAGTGAATTATATTAAGTTAGACTCCCCTATTTTCTTTATTTGTTGTTTTTTTTTACCCTTTCCCCT GTCTCTCAGGTAGTTGACTTAAATATTATGCCAAATGCCATTAAGATTTTGACTATATATTTTTTGTTTCTCATTCTTTG TCTCTTTTGTAAGTATATAGGCCAGACGGTGACATGAGTCATGAGCGATGTTCGGTTCAAAGAAATATGCATATTTTGAG TTTGTACTTTTTCTTGTTCTCGATCATAAAATGATAAAATGTTATTTCGTGCAGACATTTGATTGGGTTCTTCCTATTTC TAGCATTGACCATATACACTGCCATGCAAGTTCCAAATGTTGTAGATCTCGATTCACTGCATCATTTTCCGGACATCCTC AAGAAGGTAGACTTGCACAAATTACAATCAGAACTTTTGATGTGCCTACCTTCCATGCCTGATTTGCACAGACTCAGGGA CGGAATCTCAAATTGGCATATTAAAGAACTTCTGTATAATTGTTTGCCTGTAAGCTTTTCCACTGGCAACCAGACTGATG TTTGTGTTCTGGTAATTACTTTGCAACTGACTACTAGTCCCACTCCTCTTTTTTCCCCTTTGTTATTAGGGGAGAGGCAG TGTTGTGTTAAACTAGCTCTCTCAATGATATATCAGCACGGTTTATTTTCTCTGTTTCTATTCTTGTGGATTTCTATCAG CAATACTGATCGATAAACAATTTGCTGGAGTACAAATTATATGAGATGTATATTTCATCTGGGTTGGATAGAGTAAATGA TATGGTAGAACAAATTCTAAAACTAAATCTTAAGAGTTAAACATGGTAGAGGAAAAACTACTGAATGATGAATGTATAAT GTCATTTTGTGAATAATGTCCTATGCCTTCGTTCAGGATTAAATATTTCATGTTTATCAATTCAAAGTTTTTCTGTACCT TTGTTTTATTCTTCTTTTTCCATTGATGCTTGACTAGATTTTGGGAGACAATGCAACTTTGCTTATTTTTTTGTTGATTG TATGCAGCATAATGTAAAGGAGGACCTGGCAAACATAATAGCACCATTGATGATTAGACCAATTACAAGGTGGCCATTTT TTGTATTTCTAGGGGGTGCCATGTTTTGCTTGCTGGCTAGCAGTTTTTGCCATCTCCTCTCTTGCCACTCTGAGCGCGTA TCATACATTATGTTGAGGCTTGACTATGCTGGAATTGCAGCCCTGATAGCCACCTCTTTCTATCCTCCAGTATATTACTC TTTTATGTGTTATCCATTTTTCTGCAACCTTTACTTGGGCTTTATTACTCTATTAGGTATAGCCACCATCTTAGCTTCTC TCCTTCCGGTCTTTCAAACTCCAGAATTCCGCACCTTCCGTGCATCCCTCTTTTTTGGAATGGGATTGTCTGGTGCAGGA CCAATTCTGCACAAGCTTTTTCTCTTCTGGGGCGAACCTGAGGTATTCCATACAACTGGTTATGAGATTCTGATGGGTGC TCTCTATGGACTTGGAGCACTGGTTTATGCCACTAGGATTCCAGAACGATGGATGCCTGGGAAATTTGACATTGCCGGGC ACAGTCACCAATTGTTTCATGTATTAGTTGTGGCTGGGGCTTATACTCATTATCGCGCAGGGTTGGTTTACCTCAGGTGG CGCGACCTTCGAGGCTGTTGA
CDS sequence (LotjaGi2g1v0410700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAACCAACGGGAATCTTCTGGAAGGGAAGGGAAAGGGAAACGGTTGTGGAAGAAGGTGAAGTACCAGCTCGTTGA GTATCACTCGTTGCCTGCTTTCTTGCGAGACAACGAGTACATTCTAGGTCATTATCGATCTGAATGGCCTATGAAGCAGG TTTTGCTCAGCATCTTCACCATCCACAATGAAACCCTCAATGTTTGGACACATTTGATTGGGTTCTTCCTATTTCTAGCA TTGACCATATACACTGCCATGCAAGTTCCAAATGTTGTAGATCTCGATTCACTGCATCATTTTCCGGACATCCTCAAGAA GGTAGACTTGCACAAATTACAATCAGAACTTTTGATGTGCCTACCTTCCATGCCTGATTTGCACAGACTCAGGGACGGAA TCTCAAATTGGCATATTAAAGAACTTCTGTATAATTGTTTGCCTCATAATGTAAAGGAGGACCTGGCAAACATAATAGCA CCATTGATGATTAGACCAATTACAAGGTGGCCATTTTTTGTATTTCTAGGGGGTGCCATGTTTTGCTTGCTGGCTAGCAG TTTTTGCCATCTCCTCTCTTGCCACTCTGAGCGCGTATCATACATTATGTTGAGGCTTGACTATGCTGGAATTGCAGCCC TGATAGCCACCTCTTTCTATCCTCCAGTATATTACTCTTTTATGTGTTATCCATTTTTCTGCAACCTTTACTTGGGCTTT ATTACTCTATTAGGTATAGCCACCATCTTAGCTTCTCTCCTTCCGGTCTTTCAAACTCCAGAATTCCGCACCTTCCGTGC ATCCCTCTTTTTTGGAATGGGATTGTCTGGTGCAGGACCAATTCTGCACAAGCTTTTTCTCTTCTGGGGCGAACCTGAGG TATTCCATACAACTGGTTATGAGATTCTGATGGGTGCTCTCTATGGACTTGGAGCACTGGTTTATGCCACTAGGATTCCA GAACGATGGATGCCTGGGAAATTTGACATTGCCGGGCACAGTCACCAATTGTTTCATGTATTAGTTGTGGCTGGGGCTTA TACTCATTATCGCGCAGGGTTGGTTTACCTCAGGTGGCGCGACCTTCGAGGCTGTTGA
Protein sequence (LotjaGi2g1v0410700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENQRESSGREGKGKRLWKKVKYQLVEYHSLPAFLRDNEYILGHYRSEWPMKQVLLSIFTIHNETLNVWTHLIGFFLFLA LTIYTAMQVPNVVDLDSLHHFPDILKKVDLHKLQSELLMCLPSMPDLHRLRDGISNWHIKELLYNCLPHNVKEDLANIIA PLMIRPITRWPFFVFLGGAMFCLLASSFCHLLSCHSERVSYIMLRLDYAGIAALIATSFYPPVYYSFMCYPFFCNLYLGF ITLLGIATILASLLPVFQTPEFRTFRASLFFGMGLSGAGPILHKLFLFWGEPEVFHTTGYEILMGALYGLGALVYATRIP ERWMPGKFDIAGHSHQLFHVLVVAGAYTHYRAGLVYLRWRDLRGC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 65 | 65 | - | – | |
| PANTHER | 6 | 365 | 360 | 8.4E-191 | ||
| PANTHER | 6 | 365 | 360 | 8.4E-191 | – | |
| Pfam | 59 | 350 | 292 | 1.0E-67 | ||
| Phobius | 66 | 87 | 22 | - | – | |
| TMHMM | 68 | 90 | 23 | - | – | |
| Phobius | 88 | 171 | 84 | - | – | |
| Phobius | 172 | 194 | 23 | - | – | |
| TMHMM | 172 | 194 | 23 | - | – | |
| Phobius | 195 | 205 | 11 | - | – | |
| TMHMM | 206 | 228 | 23 | - | – | |
| Phobius | 206 | 224 | 19 | - | – | |
| Phobius | 225 | 235 | 11 | - | – | |
| TMHMM | 232 | 254 | 23 | - | – | |
| Phobius | 236 | 257 | 22 | - | – | |
| Phobius | 258 | 268 | 11 | - | – | |
| TMHMM | 267 | 289 | 23 | - | – | |
| Phobius | 269 | 289 | 21 | - | – | |
| Phobius | 290 | 294 | 5 | - | – | |
| TMHMM | 294 | 316 | 23 | - | – | |
| Phobius | 295 | 316 | 22 | - | – | |
| Phobius | 317 | 336 | 20 | - | – | |
| TMHMM | 337 | 359 | 23 | - | – | |
| Phobius | 337 | 359 | 23 | - | – | |
| Phobius | 360 | 365 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi2g1v0410700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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