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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0412700 |
| Transcript ID | LotjaGi2g1v0412700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Epidermal patterning factor-like protein; TAIR: AT4G37810.1 EPIDERMAL PATTERNING FACTOR-like protein; Swiss-Prot: sp|Q9T068|EPFL2_ARATH EPIDERMAL PATTERNING FACTOR-like protein 2; TrEMBL-Plants: tr|K7K4S3|K7K4S3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0412700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90971501..90972600) extracted from Lotus japonicus Gifu genome v1.2.
ATTGAATTGATTTTATTTTAGGGAGAAGCTTCTCTGAGTAGGATTTAGGTGCTAGAATTGATTCTAAGGTAAAATAAGTT GATCCAAAATATGAATTTGTGGTTCTAATGATTATGCATCAATTATGATATACTCTTGGATTGTTGTATAGATAAATAGA GAGAGGCTCGTGACCCGAAGGAGAGGGCTGTTTCCCTTTTGGGAGCTCCTCCTCTGCATTTTTCTCATTTGTCTTTCTAT GTTCCATCACTTCAATATATAGAAAGCTCTTTAGCAATATATTGCTCCTTACTTCCTATGTTCTGATTGAGTTAGTGCTG TTTGCTTCATCCTATTCTTTCTTGATCAACCTTCTCTAACTCCATCCATTTTCATTTGTCTACCTCCCTATACACCTGAA ATGAGGCGTGATCATGGTGTCATTTGTGATCAAAGGCTCAATTTTGTTACCCTTTCTCTTCTCTTTCTGATCATTTCAAG CTGGACTATTGAAGGTATATTAGTGATTCTCACTGCTTCCAAATTAAAAACCAGCTCCAACTAACATTGTCTTTTCTTTG ATTCTTATAGGGAGAAAGACTTTCAAACAGAATGATTTTTACCAGGTACAATTCAGCTTATTTTAAAAATGTTTTCTAGC TTCTGTTGATTGTGATGATTAGTGAATTGTGCAGACAATAGTTGATGAGAAGGCGATGGCGAGGGCACAGATAGGTTCAA GGCCACCAAATTGTGAGACAAGGTGCAGGACCTGTAAACACTGTGAGGCCATTCAGGTGCCTACAAATCCCAAATCACAT AACCACCAGATGAAGCCCTCAATGGTGTCCACAGTGGCTTATACTAAAGGAGATGACGGATCTAATTACAAGCCCATGAG TTGGAAGTGCAAATGTGGGAACCTCATTTTCAATCCCTGATGCCAAGTGTTCCACAATATTGTAGTTCATTTAGATAATT AATCTGAAGCATGACTAGTCTACTTCCTCATACTCCACTTGCTTCATTAAGTTCATTTCACTAAGCTGTTTATGTATGGA TATATGTTATGCATGCGGATTAAAATAAAAAGTGATCTCAAAACTTTTTTTTATAAATTG
CDS sequence (LotjaGi2g1v0412700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGCGTGATCATGGTGTCATTTGTGATCAAAGGCTCAATTTTGTTACCCTTTCTCTTCTCTTTCTGATCATTTCAAG CTGGACTATTGAAGGGAGAAAGACTTTCAAACAGAATGATTTTTACCAGACAATAGTTGATGAGAAGGCGATGGCGAGGG CACAGATAGGTTCAAGGCCACCAAATTGTGAGACAAGGTGCAGGACCTGTAAACACTGTGAGGCCATTCAGGTGCCTACA AATCCCAAATCACATAACCACCAGATGAAGCCCTCAATGGTGTCCACAGTGGCTTATACTAAAGGAGATGACGGATCTAA TTACAAGCCCATGAGTTGGAAGTGCAAATGTGGGAACCTCATTTTCAATCCCTGA
Protein sequence (LotjaGi2g1v0412700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRRDHGVICDQRLNFVTLSLLFLIISSWTIEGRKTFKQNDFYQTIVDEKAMARAQIGSRPPNCETRCRTCKHCEAIQVPT NPKSHNHQMKPSMVSTVAYTKGDDGSNYKPMSWKCKCGNLIFNP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 5 | 124 | 120 | 5.4E-42 | – | |
| PANTHER | 5 | 124 | 120 | 5.4E-42 | ||
| Phobius | 12 | 30 | 19 | - | – | |
| TMHMM | 13 | 30 | 18 | - | – | |
| Phobius | 31 | 124 | 94 | - | – | |
| Pfam | 56 | 124 | 69 | 1.1E-17 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Stomatal complex development | The process whose specific outcome is the progression of the stomatal complex over time from its formation to the mature structure. The stomatal complex is the stomatal guard cells and their associated epidermal cells. |
Expression pattern of LotjaGi2g1v0412700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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