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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0413500 |
| Transcript ID | LotjaGi2g1v0413500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT4G37850.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9T072|BH025_ARATH Transcription factor bHLH25; TrEMBL-Plants: tr|C0JP20|C0JP20_LOTJA Putative basic helix-loop-helix protein BHLH18; Found in the gene: LotjaGi2g1v0413500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91086422..91088780) extracted from Lotus japonicus Gifu genome v1.2.
GTGGGTTTTTTCCCCTGTCTTTTATAAGACTAACAACTTTGACCAAAAAAAAAACTCACAACCCAATTGACCAATATGAA TTTTTATAATTAAATTAATAAATAAAATATAAATATTTTAACTCACTTATTTTCAATGTAATTAGATGATGAGTTATTTA ACTCAAACTTTCTCATGAGTCAATTTAGATAACTCCATATACTCTTCATTGCAAACGTGGCCCAAACTTTTATATTTTAC TCTTACCTATAGTGCAGTAACTCTTCATTGCAAACGTGGAGCAGCCATGGCCTTGTAATGGTATGAGAAATTCATGTTAA AATATTTGTCAGTGAGCAATTCTTAAATCACAAACCGATTCTGATGCTCTAAGAAATAATGGGTGATGCGTTCAATAATA AGTCCTACCTTTTACCGATTCCATTGCTTGTCCAAATTACATTTACAAAACTAATCCAACATCATCTTCTGCTTCACTCC ATTATCCAGCTACCTACGGTTGAAAAATCATTTCTAAATATGCATTCTATGACTATATATAGTTGAACCACAAGCATATT TGAGCAGACATTACTCTACTCTTGCCTTTTAAATGAATAGAGGATCCCATTCCCACCTTGTTTAACCTGTACCCAATAAT GGATTGTTTTGCTTGCCCATATGATGATTTTGACATGCACTCTTTCTCCACTCTCCCAGATAGCGATTCTTCTTATCAGT GTTTCAACTATGAAACAACACCAAATTTTGTCCCTGCTGAGGTTTCTAATTACTCTGTTGCCTCAGCAAAACCAACCAGT GACATGATCATGCCTTCTTCCTCTCCAATACCATCCCAACTTATTTCATTCAACCACTTCAACAACCCTGCTTTGGTTTC TCAAGGTGCATCTGAGGACAGTATTTTCTCAAATTATGGTAATCCCCCGAACCAATTCGCTGCGAGGACCCCAACTCAAA CTCAAGAACACATAATAGCCGAAAGAAAAAGAAGGGAAAAGCTCAGCCAGAATTTCATTGCTCTTTCTGCAATTCTTCCT GGCCTTGCGAGGGTAATACTAATTCATTCTCAGCTTAATTAGCCATTGTTTTTTCAATCACATTCATCATGCTATTTTAT CAAACTTCATTTTTCCAAACGCAATTTTATCCAACGGTATTGTGCAGATGGACAGAGGTTCTATTTTGGGAGTTGCTATC ATGTATGTGAAACAATTACAGGAGCAAGTGCAGACTCTGGAGGAGCAAGCAGCCAAGGAAGGAGTTGGATCCGCACTTCT AGTAAAGAGATCTGTTCTCTTCATCAGTGATGATAGCCTAACAAAATCTGATAAAATCTTTGACAACCACTGTTATAAGT CACTCCCTGAAATCAGAGTAAGAGTTTCTGGCAACGATGTACTCATCAAGATTCATTGTCACAAACAAAGTGGATATGAG ACCATAATACTTGGAGAAATAGAAAAGCATGATCATCTCACTGTCCACAGTTTCAGCTTTTTGCCCTTTGGGAATACCAT TATTGATGCAACTATTATTGCTAAGGTAACTAAATACACACACACACACACACATATATATATATATATAATATAGTTTG CATTTGAGATTAATTTGATTGCTATATAAACCAAGAGCAATACAATAATCGTGTTGTGGTATTGCAGATGAACAAGGAAA ACTGCAAGACATCAAAGGACATCGTAAGAAGCCTGCAGCAGGCTTTGAAGCAGATCATTTGATGGCGGATAATCGGTTCA AGGAATCAATGTCAGTGATGTATTGATCAATGATCGCTGTAGTAGTGTAGTGTGTGGGATTTCGACACATATGTTGCCGT TGTTCGATCTATTCTGTTCTTGTATTTTTCCCTAGTTGACTAGTCTATATAATCTTCATTACTATGTTTAAATAGAAGTG AGTTTTGTTGGCTAATTTTTTCTTTTGAACAAGCAAAATTCATTTCATTAAAAACAGAGACAAAGGTCTTAGTTACAAAT GGAGTTTACATCATTTGGCAGCATATAAATTTATGCCCACCGATCGTTTTGTCTCAAATGTCCTTTATTTGTTTAAGAAC CTATTGCCTGTTTGCTGACACTCCTATATTATGAAATACATTTGGGAAAAAAATGATTTCACTTGAGATAATCCAAATTA TGGTCAATCAATATAGCAACAAAATAAGTCCTACTTCTACATCAATCAATTAGTTTTCATGCACATAATGCAGGTGGAAT GACGGATCATGAGAGATATATAAATGTGATAGTTGCAATTTAGTATAGGAAACTACTTGGTCCTACCACAGATCTTGTGA TCTCCTTTTTTATTTCTCTGCTAGTCAAGTAAATGCACA
CDS sequence (LotjaGi2g1v0413500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTGTTTTGCTTGCCCATATGATGATTTTGACATGCACTCTTTCTCCACTCTCCCAGATAGCGATTCTTCTTATCA GTGTTTCAACTATGAAACAACACCAAATTTTGTCCCTGCTGAGGTTTCTAATTACTCTGTTGCCTCAGCAAAACCAACCA GTGACATGATCATGCCTTCTTCCTCTCCAATACCATCCCAACTTATTTCATTCAACCACTTCAACAACCCTGCTTTGGTT TCTCAAGGTGCATCTGAGGACAGTATTTTCTCAAATTATGGTAATCCCCCGAACCAATTCGCTGCGAGGACCCCAACTCA AACTCAAGAACACATAATAGCCGAAAGAAAAAGAAGGGAAAAGCTCAGCCAGAATTTCATTGCTCTTTCTGCAATTCTTC CTGGCCTTGCGAGGATGGACAGAGGTTCTATTTTGGGAGTTGCTATCATGTATGTGAAACAATTACAGGAGCAAGTGCAG ACTCTGGAGGAGCAAGCAGCCAAGGAAGGAGTTGGATCCGCACTTCTAGTAAAGAGATCTGTTCTCTTCATCAGTGATGA TAGCCTAACAAAATCTGATAAAATCTTTGACAACCACTGTTATAAGTCACTCCCTGAAATCAGAGTAAGAGTTTCTGGCA ACGATGTACTCATCAAGATTCATTGTCACAAACAAAGTGGATATGAGACCATAATACTTGGAGAAATAGAAAAGCATGAT CATCTCACTGTCCACAGTTTCAGCTTTTTGCCCTTTGGGAATACCATTATTGATGCAACTATTATTGCTAAGATGAACAA GGAAAACTGCAAGACATCAAAGGACATCGTAAGAAGCCTGCAGCAGGCTTTGAAGCAGATCATTTGA
Protein sequence (LotjaGi2g1v0413500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDCFACPYDDFDMHSFSTLPDSDSSYQCFNYETTPNFVPAEVSNYSVASAKPTSDMIMPSSSPIPSQLISFNHFNNPALV SQGASEDSIFSNYGNPPNQFAARTPTQTQEHIIAERKRREKLSQNFIALSAILPGLARMDRGSILGVAIMYVKQLQEQVQ TLEEQAAKEGVGSALLVKRSVLFISDDSLTKSDKIFDNHCYKSLPEIRVRVSGNDVLIKIHCHKQSGYETIILGEIEKHD HLTVHSFSFLPFGNTIIDATIIAKMNKENCKTSKDIVRSLQQALKQII
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 287 | 278 | 9.2E-85 | – | |
| PANTHER | 10 | 287 | 278 | 9.2E-85 | – | |
| Gene3D | 99 | 169 | 71 | 1.2E-13 | ||
| SUPERFAMILY | 105 | 167 | 63 | 1.83E-14 | ||
| ProSiteProfiles | 106 | 155 | 50 | 13.129 | ||
| Pfam | 109 | 156 | 48 | 9.6E-7 | ||
| CDD | 111 | 160 | 50 | 6.95967E-11 | ||
| SMART | 112 | 161 | 50 | 6.5E-10 | ||
| Coils | 152 | 172 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi2g1v0413500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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