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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0413500 |
| Transcript ID | LotjaGi2g1v0413500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix loop helix (BHLH) DNA-binding family protein; TAIR: AT4G37850.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9T072|BH025_ARATH Transcription factor bHLH25; TrEMBL-Plants: tr|C0JP20|C0JP20_LOTJA Putative basic helix-loop-helix protein BHLH18; Found in the gene: LotjaGi2g1v0413500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91086798..91088225) extracted from Lotus japonicus Gifu genome v1.2.
ATATTTGAGCAGACATTACTCTACTCTTGCCTTTTAAATGAATAGAGGATCCCATTCCCACCTTGTTTAACCTGTACCCA ATAATGGATTGTTTTGCTTGCCCATATGATGATTTTGACATGCACTCTTTCTCCACTCTCCCAGATAGCGATTCTTCTTA TCAGTGTTTCAACTATGAAACAACACCAAATTTTGTCCCTGCTGAGGTTTCTAATTACTCTGTTGCCTCAGCAAAACCAA CCAGTGACATGATCATGCCTTCTTCCTCTCCAATACCATCCCAACTTATTTCATTCAACCACTTCAACAACCCTGCTTTG GTTTCTCAAGGTGCATCTGAGGACAGTATTTTCTCAAATTATGGTAATCCCCCGAACCAATTCGCTGCGAGGACCCCAAC TCAAACTCAAGAACACATAATAGCCGAAAGAAAAAGAAGGGAAAAGCTCAGCCAGAATTTCATTGCTCTTTCTGCAATTC TTCCTGGCCTTGCGAGGGTAATACTAATTCATTCTCAGCTTAATTAGCCATTGTTTTTTCAATCACATTCATCATGCTAT TTTATCAAACTTCATTTTTCCAAACGCAATTTTATCCAACGGTATTGTGCAGATGGACAGAGGTTCTATTTTGGGAGTTG CTATCATGTATGTGAAACAATTACAGGAGCAAGTGCAGACTCTGGAGGAGCAAGCAGCCAAGGAAGGAGTTGGATCCGCA CTTCTAGTAAAGAGATCTGTTCTCTTCATCAGTGATGATAGCCTAACAAAATCTGATAAAATCTTTGACAACCACTGTTA TAAGTCACTCCCTGAAATCAGAGTAAGAGTTTCTGGCAACGATGTACTCATCAAGATTCATTGTCACAAACAAAGTGGAT ATGAGACCATAATACTTGGAGAAATAGAAAAGCATGATCATCTCACTGTCCACAGTTTCAGCTTTTTGCCCTTTGGGAAT ACCATTATTGATGCAACTATTATTGCTAAGGTAACTAAATACACACACACACACACACATATATATATATATATAATATA GTTTGCATTTGAGATTAATTTGATTGCTATATAAACCAAGAGCAATACAATAATCGTGTTGTGGTATTGCAGATGAACAA GGAAAACTGCAAGACATCAAAGGACATCGTAAGAAGCCTGCAGCAGGCTTTGAAGCAGATCATTTGATGGCGGATAATCG GTTCAAGGAATCAATGTCAGTGATGTATTGATCAATGATCGCTGTAGTAGTGTAGTGTGTGGGATTTCGACACATATGTT GCCGTTGTTCGATCTATTCTGTTCTTGTATTTTTCCCTAGTTGACTAGTCTATATAATCTTCATTACTATGTTTAAATAG AAGTGAGTTTTGTTGGCTAATTTTTTCTTTTGAACAAGCAAAATTCATTTCATTAAAAACAGAGACAA
CDS sequence (LotjaGi2g1v0413500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTGTTTTGCTTGCCCATATGATGATTTTGACATGCACTCTTTCTCCACTCTCCCAGATAGCGATTCTTCTTATCA GTGTTTCAACTATGAAACAACACCAAATTTTGTCCCTGCTGAGGTTTCTAATTACTCTGTTGCCTCAGCAAAACCAACCA GTGACATGATCATGCCTTCTTCCTCTCCAATACCATCCCAACTTATTTCATTCAACCACTTCAACAACCCTGCTTTGGTT TCTCAAGGTGCATCTGAGGACAGTATTTTCTCAAATTATGGTAATCCCCCGAACCAATTCGCTGCGAGGACCCCAACTCA AACTCAAGAACACATAATAGCCGAAAGAAAAAGAAGGGAAAAGCTCAGCCAGAATTTCATTGCTCTTTCTGCAATTCTTC CTGGCCTTGCGAGGGAGCAAGTGCAGACTCTGGAGGAGCAAGCAGCCAAGGAAGGAGTTGGATCCGCACTTCTAGTAAAG AGATCTGTTCTCTTCATCAGTGATGATAGCCTAACAAAATCTGATAAAATCTTTGACAACCACTGTTATAAGTCACTCCC TGAAATCAGAGTAAGAGTTTCTGGCAACGATGTACTCATCAAGATTCATTGTCACAAACAAAGTGGATATGAGACCATAA TACTTGGAGAAATAGAAAAGCATGATCATCTCACTGTCCACAGTTTCAGCTTTTTGCCCTTTGGGAATACCATTATTGAT GCAACTATTATTGCTAAGATGAACAAGGAAAACTGCAAGACATCAAAGGACATCGTAAGAAGCCTGCAGCAGGCTTTGAA GCAGATCATTTGA
Protein sequence (LotjaGi2g1v0413500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDCFACPYDDFDMHSFSTLPDSDSSYQCFNYETTPNFVPAEVSNYSVASAKPTSDMIMPSSSPIPSQLISFNHFNNPALV SQGASEDSIFSNYGNPPNQFAARTPTQTQEHIIAERKRREKLSQNFIALSAILPGLAREQVQTLEEQAAKEGVGSALLVK RSVLFISDDSLTKSDKIFDNHCYKSLPEIRVRVSGNDVLIKIHCHKQSGYETIILGEIEKHDHLTVHSFSFLPFGNTIID ATIIAKMNKENCKTSKDIVRSLQQALKQII
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 269 | 260 | 2.4E-66 | – | |
| PANTHER | 10 | 269 | 260 | 2.4E-66 | – | |
| Gene3D | 99 | 177 | 79 | 3.7E-5 | ||
| SUPERFAMILY | 105 | 139 | 35 | 7.27E-6 | ||
| CDD | 111 | 146 | 36 | 1.17514E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi2g1v0413500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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