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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0413800 |
| Transcript ID | LotjaGi2g1v0413800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT4G37850.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9T072|BH025_ARATH Transcription factor bHLH25; TrEMBL-Plants: tr|G7K131|G7K131_MEDTR Basic helix loop helix (BHLH) DNA-binding family protein; Found in the gene: LotjaGi2g1v0413800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91117372..91119894) extracted from Lotus japonicus Gifu genome v1.2.
CGCACGTATTAGAGAAAGGACACTGCTAATTACCATTCAGTACTCAGTTAGCAAAGAATATTCCACAGAACGAATGGTAA CCACGTGCTCTTCAATAAATTCTAGATCAAATTTCCTGCTACTCTTTATAAAAGAGGCAAGTTCTTCTTATCCCACTCTA GCTGTGGATAGGTATTATTTCCATTTCCAGTTTGGAGTATGAATGTCTTGGGTTTGTGAAAATGTCTAAACCACATGTTT TTCTTTTTCTTTCAGGATCATTGGTTAGTCCTAAGATTTCTCACAAGTCACTGTAAGAAGATTGCTTGCAGCTAGCAGCA GAATGATGTCACCAGAGGGAGAATCATGGACAAGTTGGTTGTGTGACTTGGTATATTCAACATCTTTGTTTTCAACTAAC TACACTTTATGTGAGTAAAACAAAACTCACTCTTGTAACTTAGTACCCTTTTCTCTGTTTTCCCAGGAACCAGAGGATTG CAATTTCCTCAATGAATCAGACACAAACTGGGCAGGTGAAATTAGTTTCCCATCTGAAGCACAGGAACAGAACTTGCAGA GATCTTTCACTATAGATAGCAACCACTCTCACTCTACCACCACCTCCACCTTCAAAACAGAACACTGCAGCAGCACCATG AGCAATTCCTCCTCAGGGGAGGATGATAACACCACCTCTGAGAGGCCTTCCAAGACACTCAAGATGTCAAATGCTTCTCC CTCCTACATTCTTTCGTTTAGCAATGAGAATCCAGCACATATATTGAACTTTGATTCTACCCTGAAGCCAAAATCTAAGG CTTTGACTGTGAATGTGAATCATCATGGGAACAGGTCACTGGAAAGTCAAAAGAAGGAGACAAAACGCAAAGTACAGGAG GGGGAGAAGGCCAGATCTCCTCACCAAGCTCAAGATCACATAATTGCTGAGAGAAAGAGGAGAGAAAAGATTAGCCAGCA GTTCATTGCTCTTTCAGCCCTTATTCCAGGCCTAAAAAAGGTTCAGTTCATTTCTCTGCTAATTAGTTAAGTGGATTCAA TTTTCTGGTACTGATTATTAAGGGTATGTAATATAATGCAGATGGATAAGGCTTCTGTGTTGGGGGATGCTATACAGCAT GTGAAACAGCTCCAAGAGCAGGTGAAGCTACTGGAAGAGCAAAGCCAAAGGAAAAGCTCAGAATCTGTGGTGTATGTTGA GAAATCTAAGTCCTCTGTAGTGGATGATGATGTCTCACTCTCAGACACATCCTCAAATTCAGACAACTCTAATAATTTTT CACTGCCTGAAGTTGAGGCAAGGGTGTCAGAGAACAAAGTGTTAATCCGAATCCACTGTGAGAAACAAGAGGGGGTGCTG ATGAACATACTCAAGGAGATACATAACCTTAATCTATCAGTGATCAATTGCAGTACCTTGCTTTTTGGGACCTCCAAACT GGACATAACCATCATAGCAGAGGTATACTATAGCTACTTCATTCCATGGCTTTCATTAGTTAATCACTTAGTTTACTCCT AGTTAAAAAAGGTTCAATAATGTTATGTGTAAGAAAATTTTCCATTTTGATTTGTTGACGTTGAGAAGTGTGACTTGGAT TGATAGTTTCTTGGCTTATTGTCACTTTTAGGCTCCTCCATCTCAATATATGTTACATCATTTGAGTAAGGGTGGGTTTA ATTTGGAACTATATGCATAATTTTGTTGAACCTGTTACAAATGCAGATGGATGATGGGTTCAGGCTGAGCGTGAAGGAAC TGGCAAGAAAGCTTCGAGTGGGGCTCTTGCAATTCATGTAGAGGTTTTGTCATTACCTGGCCCTGACTTTAATGTATTCG GTTATGGAGTCAATAAATGTCCATCTTCTTAGCAGTGTTGACATGAACTAGATAATGGACCCGTTAATTATAGAAGTAGT TGAGTTGAGACTTGAGTATCAAAAAAAATATCCACACAAATTAATAAAGATGGGATCTATCATTGGGAAAAGAGATTGAT TGAGTGACCGCAAAAATGCACTGCCATGGAAATGAGACACGTCTTGTCCTAACTTAGAAAACATAAATTTTCTCCTTAGA AAGTCATAGAGTGGATTAATTTAAGTACTTAAAAATTGATCCACCTTGTAAGCCCTCTTTTCTCCTTTCTTGTTAGGCGT GTTTTAAGAGTAAGGTGAAGAATAATTTTTGGCTTCAATCATGTATCATAAGTTTGACTGGAATATGATTCCTTTGCTGA TATTGGTTTTGGATTCTTGCATTAGTTGATAGCTAATTTCGTTGGCATTATACAAGTAAACCAAATGCAGATATACATTC TCCTTGTTCTCTTAAGAAGACTACCCCCAATGTCTCTCTCTACCCGTAACACCTTATAGCCAACACAACCAAGCCAGACC AGAAATATTTTTTTGTTGTTTTTTTTGTGAGGAGTGTGTAAGAACTGGGCCGAGAGGCCCAATATTCAGTCCGGAATTGT TTTAAGTTTTTTTGTGCACGGTAAATGTCAATTTATTACTTAC
CDS sequence (LotjaGi2g1v0413800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTCACCAGAGGGAGAATCATGGACAAGTTGGTTGTGTGACTTGGAACCAGAGGATTGCAATTTCCTCAATGAATC AGACACAAACTGGGCAGGTGAAATTAGTTTCCCATCTGAAGCACAGGAACAGAACTTGCAGAGATCTTTCACTATAGATA GCAACCACTCTCACTCTACCACCACCTCCACCTTCAAAACAGAACACTGCAGCAGCACCATGAGCAATTCCTCCTCAGGG GAGGATGATAACACCACCTCTGAGAGGCCTTCCAAGACACTCAAGATGTCAAATGCTTCTCCCTCCTACATTCTTTCGTT TAGCAATGAGAATCCAGCACATATATTGAACTTTGATTCTACCCTGAAGCCAAAATCTAAGGCTTTGACTGTGAATGTGA ATCATCATGGGAACAGGTCACTGGAAAGTCAAAAGAAGGAGACAAAACGCAAAGTACAGGAGGGGGAGAAGGCCAGATCT CCTCACCAAGCTCAAGATCACATAATTGCTGAGAGAAAGAGGAGAGAAAAGATTAGCCAGCAGTTCATTGCTCTTTCAGC CCTTATTCCAGGCCTAAAAAAGATGGATAAGGCTTCTGTGTTGGGGGATGCTATACAGCATGTGAAACAGCTCCAAGAGC AGGTGAAGCTACTGGAAGAGCAAAGCCAAAGGAAAAGCTCAGAATCTGTGGTGTATGTTGAGAAATCTAAGTCCTCTGTA GTGGATGATGATGTCTCACTCTCAGACACATCCTCAAATTCAGACAACTCTAATAATTTTTCACTGCCTGAAGTTGAGGC AAGGGTGTCAGAGAACAAAGTGTTAATCCGAATCCACTGTGAGAAACAAGAGGGGGTGCTGATGAACATACTCAAGGAGA TACATAACCTTAATCTATCAGTGATCAATTGCAGTACCTTGCTTTTTGGGACCTCCAAACTGGACATAACCATCATAGCA GAGATGGATGATGGGTTCAGGCTGAGCGTGAAGGAACTGGCAAGAAAGCTTCGAGTGGGGCTCTTGCAATTCATGTAG
Protein sequence (LotjaGi2g1v0413800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMSPEGESWTSWLCDLEPEDCNFLNESDTNWAGEISFPSEAQEQNLQRSFTIDSNHSHSTTTSTFKTEHCSSTMSNSSSG EDDNTTSERPSKTLKMSNASPSYILSFSNENPAHILNFDSTLKPKSKALTVNVNHHGNRSLESQKKETKRKVQEGEKARS PHQAQDHIIAERKRREKISQQFIALSALIPGLKKMDKASVLGDAIQHVKQLQEQVKLLEEQSQRKSSESVVYVEKSKSSV VDDDVSLSDTSSNSDNSNNFSLPEVEARVSENKVLIRIHCEKQEGVLMNILKEIHNLNLSVINCSTLLFGTSKLDITIIA EMDDGFRLSVKELARKLRVGLLQFM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 341 | 340 | 2.6E-121 | – | |
| PANTHER | 2 | 341 | 340 | 2.6E-121 | – | |
| MobiDBLite | 38 | 97 | 60 | - | – | |
| MobiDBLite | 134 | 168 | 35 | - | – | |
| Coils | 138 | 158 | 21 | - | – | |
| MobiDBLite | 139 | 168 | 30 | - | – | |
| Gene3D | 142 | 228 | 87 | 5.3E-16 | ||
| ProSiteProfiles | 162 | 211 | 50 | 15.186 | ||
| Pfam | 165 | 212 | 48 | 1.2E-9 | ||
| SUPERFAMILY | 166 | 226 | 61 | 1.03E-16 | ||
| CDD | 167 | 216 | 50 | 2.29251E-11 | ||
| SMART | 168 | 217 | 50 | 5.2E-14 | ||
| Coils | 201 | 228 | 28 | - | – | |
| MobiDBLite | 243 | 262 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi2g1v0413800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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