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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0414000 |
| Transcript ID | LotjaGi2g1v0414000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT4G37850.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9T072|BH025_ARATH Transcription factor bHLH25; TrEMBL-Plants: tr|C0JP22|C0JP22_LOTJA Putative basic helix-loop-helix protein BHLH17; Found in the gene: LotjaGi2g1v0414000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91143843..91148773) extracted from Lotus japonicus Gifu genome v1.2.
GTGATAATGAATGTTTTATTTCACCATAAAAATATTTCTATATTCAGATTCACACAGTACTTGGGGCCCATATTTTTAAT AGTGCAATTCCAGGGTAGGTGCCAAAGTAATTGACAACACTTTATAAAGAGGGTTAGGAACTCTGTTCTGTGTCAAACTG GAGAGCCTAATACTCTGCACTGCACTGTCAATTCTATAGTGATCACTTGTTATGGAGAAACTGAACACACCAACAGAGGC ATCATCATCTTGCTGGTTATCTGATTTGGTAAGGATCGCGTTTATCAATGTCCCCATGTTAACTGCACCAGAAAACTGAA GTGAAATTTTGAGTTTGAGTTACCATTTTTGCTTTTTTTTTTGCAGCTATTGCAGGAAATGGATGATTGCAATTTTTTCC AACAATGCAATCCGAACTTGCTTGGCGATGAAGAGTTTCTTTCACATGATATAGTGAGTGCTTTTCAGAGTGACAATTTG CAACAACAACAACAACCTCTGTCTTCTGAGAGTTACTCTTCTTACCCTGTTTCAAATTCTGAGACTGTGTGGAATTCTTC CACTGATGAAACGTGTTTTGAGAGACCCGCTAAGCAGCAGAAAACCAAACACGTTTTACCAGATCAATCCAACTCTTCTT CACCTTCTTCACCTACCTCTCAGATCCTGTCCTTTGAGAACACCCATCTTTATGGCTTAGATTGTAGCTTGAACCCGAAT TTGCAGAACGAGGGTGTTTCAGTTTCAACACCCCAACTGCGGAATGTGAATTTTCCAGCACAAAATCGAAAAGGGTCAAC ACAAAATCAAAACTTTGAAACCATAACAAACCCTCAAGGAAAAGGTAGCAAGAAATCACATGGTCAGGATCACATCATAG CTGAGAGAAGGCGTAGAGAGAAGCTCAGCCAGAGCTTAATTGCTCTTGCAGCCCTTATTCCTGGTTTAAAGAAGGTACAC CACAGTCACCCTTTTTCACTCTTAAGTGTGTTTGGATTTAAGGTAAAAAATTTAGATAAAATCGTAGAATATAAGAATAA CTTTATTTTTTTTGAATGTGTACCGTAATTTTGGCTTTTCAAATGTGTATCTATAATTTAGTTAAGCGCATCATAGCTGA GAGAAGGCGTATATTTGATAAGCTATTATAAACAGTAAAAATAAGCTCAAAGCAGTTTATAAATAATTTAAATACTTGCA TAAACATTTATCTTATAAGATAAAATCAAATAAGTTCTTTCAAACAGTTGCAGTCTCACTTTACTTTAGTTCTAGTTTCA TAATGTTTTCTAGTTGAGATAAATATATATATATTTGGTTGGTGACTTACCATATATTACGTCTTCATAGATAAAGACAC AAAGACACAAAAAGTTTTATGAACGGGTTTCAATGATAATTTATTGGAGAAACTAATCTTTATGCAAGATTATTTATTTT TAAGAAGCGATTTCAACTATATAGTATTGAGAAATCGGAGCAAGATTAAAATAACCAGTGATCCATTATTGTAGCATCTA AGTGCATGCGTGGGAATATTCTAAAGACAATATTTTAGCTTATAAGTATCAAAATTAGGTTTCAAAAAAAGTATCAAAAT TAAGTCTGAAATGAAAAAAAAAAGTTTATCTAAACATGATATAACTCGATTATGCTGGGAATTTGTTACAGATGGACAAG GCTTCAGTCCTTGGAGACGCTATCAAGTACGTGAAAGTGCTTAAAGAGCGTTTGAGGTTACTGGAAGAACAGAACAAGAA CAGAGCAATGGAATCTGTGGTGGTGGTTAACAAACCACAAATCAGCAACGATGATAATTCATCATCCTCATGCGATGATG GTACCATTATTGGGAGTGAAGAAGCTCTCCCCCATGTTGAAGCAAGAGTGTCAGAGAAGGACGTGCTCCTCCGATTACAC TGCAAAAAGCAAAAGGGGCTTTTGCTGAAAATATTGTTTGAGATTCAAAACCTTCATCTCTTTGTCGTCAATAGCAGTGT CCTTCCTTTTGGAGATTCCATCCTTGACATTACAATTGTTGCTCAGGTAAACAATATTATCAACTTGATCATCATGAATT CAAAAAGGCTTAAATATGTTTGTGGTCCCTGGAAATACAACAAATGTTGACTTTAGTCACTCAAAAAATATTTCTCAGTT TTTAATCTTAAAAATATACATTGTCACATAAGTAAACTTAATGACAAAGATTGAATTGTGTAAATGAGTGGATCTTATAG TGTTAATTTGATTTTGAAAAACACCGGTGAGTCATTATTCTGTGACTCAAGTAAAATTTAAGAATTATGACTAAAATAAA TAAAAATGTATATTTTCATGGATTAAAAATAAAACAAATATTTTTTCAGATACGAAATCTAACATTAGCTGGATTTTCAG GGGAAAACATATTTAAGCCATTCAAAAATATGATGTACAATTGATTTCATGTTTAATCATTGTTTTAAGAACTTATTGTG ATGATTTTGCAGATAGGAGCAGAATACAACTTGACCATAAACGAACTAGTAAAAAATTTGCGAGTGGCTGCATTGAGATC CATGTCTTCATAATATAGATGTGTGGTCCTGGTTTTGTTGTGTGGTGGGGATCGATAATAAATAATAATAATGTTTGAGA CTGATATATAACTGCATCTGCATTTGGTGAACGTACTCGAACACTGATTGATTGAAAGTTGAAACTCAACCGGATTCAAT TGATGCTTGTAAATCCGAAAATTGTATCGTTGTTTTGGTAGTACTAGTAGTATTTAAATTCAACCGATACGATCGATTTT CTGTCCCCCCACATATTGGAATAAAGGCTTGATAGACCCATGGCATGTGAATGCTCCACGTTTGTCTCCTCATTTGGGCA GATTGTACTCTCCCTCTAGTTTCTTGCTTGTCTCATCCTAGCTTGGCTTGTGTATTTTAATGAGAGTTGTTTCTCACACA TTAATTATGTGAATGTTTACAGAAGTTTCCATTCTCAGGAAATGTTTCTACAAGTGATGCTGGAATTTCTCGAATAAGAT CCGTGTATTGGTCCCAAAAAATGTGTGGTAAACTAAAAGCCACTTAACACGAGTTTTAGAAGTGCAGGCTTAGCTAGAGG GCTTGAATCAACATTTATCTAATGAATGGCTGTCACGTAGCTTAATTAAAAGCATAAAAGACCCGAGCCGTTCGTAGCTC TTTCTCAATCCATCGATGAATCATTTAAATTTGTGATTTTTATGTATCTTATATATATATTTGATACTGGAGTACATGCG TTGTTGCATTAGAAACAAGCTTCACATGGACAAGCTGGGTTTAGTCGACAAGGCTCGTGCTCTATATATAGCCCCGAGTA CTCTTGGTACTTGGAACCTTGTTAGAGATAAATAATTATTGTTCCTTAGATTGATTCTCAGTAATGGCCACTACATCGGA TTTCATGGAGGAAAAATTTGTTCTAGAACTCGGTAAACCTTCACTTTATGAAACTCATCAGCCTATGTTTGTGAAGCCTT TGTGTTGTGAAATATTAGCCCCTTGTGGTGAATTTTTTTTCATACCCTATATTTTTGGAGCCTCGAGTATGCTTTAACTT TTTATTAGCAGTTTAGCACTACATTGATCATTTAGACCTGACAAGGAGCATAGTAGTCTGGACATTTGAGGAAAGATTGT TTATAAATTCAATATTTTAATTATTTGCTAAGGCAGAATGAGAGAAGAGAGAAATAAGGAAGAAAATGAAATTGTTAGAC TGTAGAGAGAGAAATGATTCAACCTTGTTTAATTTGTGGGTTGTTTAAATTACCTCATGAAGTTACACTAGTGGCTTGCG AGTTGCGAGCTAGTGGAAATGAGAATATCAAATTACACTATTTGGAGATGATTTTTCATGAATTATAGAAGAGTAAAAAT ATATTTGTTTATGACAAAATCCTCAAACAAGGTTAGGTAGGTCGAACACAATTATACCTTTGAATTTCTCTGCAAATGAC ACATGATCTTATTAAGCATGAGAAAACCTCTTATACAGTCGAGTTTCTCTATGACGTAATACAGTGGATCACACTATTAC ACTGCTAGAGACTCCCTATAACGTACCACACTCGATGATATTGCATTGGTGTGCTGACAAATAAGTATGAATGTCTTCTA TGCGGGCGGCTAACTCATACTTGCAGGGTAGTGTTTAGTCATCTTACAAGGATTCCGCGTGCAGTGATATGGAGTTTGCT AGCCAAATATCCTAACGGTCCAATATTTATCAATGTTCATCCTCTTTCTAGTTTTCACGCCTATAGAGTGGAGAAAAACC TAAAGTGGAATCTTTCTGTATGGCTTTCTATCCCCTCCATTTTCAGGTCTCTCCCAAACACGTTGAAAGCTCATTTTCTA GTCATTTCCATATATATTTGCAACTTCCCTCCTCTCAAAATCCCCTCAAACAAATTAACACGGTGTATAGTGTTAATAAG AGGACATCCTTAAGAATAGTACTCCCAAGACGATTTTCAAAAAAAAAAAAACTATATGAACACAGATAACTTGGGTCACA GACTTACGGGTAAATTAATATATGTACGTGGCCTATTACCCTCGTTTTAAATCATTTTTTTTCTGAATAAAAAATTTCCT GCAAAGGTTCCTGAAGATTCGAGCCTGGTAATATTTTTTGGTTGCAGCGCTGTTGATGATCTCTTCTAATGTTTTTTAAC AAGTAGTTAAATTTTCTTAATGCCACGAGCTATGAATCAAGTATCCCAATGATATCAAATTTGATGATCTCATCTTAGAC TCTGTACCAAATCTTGGCCTATTTTTTTGGATCTGATCTTGGCCTTTGACTGTTTTGCGATAAAATCAAATAAAAAAATA AGAGAAGTTGTATAAAGAAAATAAAAAACCGATAAATATATAATTATTTTT
CDS sequence (LotjaGi2g1v0414000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAAACTGAACACACCAACAGAGGCATCATCATCTTGCTGGTTATCTGATTTGCTATTGCAGGAAATGGATGATTG CAATTTTTTCCAACAATGCAATCCGAACTTGCTTGGCGATGAAGAGTTTCTTTCACATGATATAGTGAGTGCTTTTCAGA GTGACAATTTGCAACAACAACAACAACCTCTGTCTTCTGAGAGTTACTCTTCTTACCCTGTTTCAAATTCTGAGACTGTG TGGAATTCTTCCACTGATGAAACGTGTTTTGAGAGACCCGCTAAGCAGCAGAAAACCAAACACGTTTTACCAGATCAATC CAACTCTTCTTCACCTTCTTCACCTACCTCTCAGATCCTGTCCTTTGAGAACACCCATCTTTATGGCTTAGATTGTAGCT TGAACCCGAATTTGCAGAACGAGGGTGTTTCAGTTTCAACACCCCAACTGCGGAATGTGAATTTTCCAGCACAAAATCGA AAAGGGTCAACACAAAATCAAAACTTTGAAACCATAACAAACCCTCAAGGAAAAGGTAGCAAGAAATCACATGGTCAGGA TCACATCATAGCTGAGAGAAGGCGTAGAGAGAAGCTCAGCCAGAGCTTAATTGCTCTTGCAGCCCTTATTCCTGGTTTAA AGAAGATGGACAAGGCTTCAGTCCTTGGAGACGCTATCAAGTACGTGAAAGTGCTTAAAGAGCGTTTGAGGTTACTGGAA GAACAGAACAAGAACAGAGCAATGGAATCTGTGGTGGTGGTTAACAAACCACAAATCAGCAACGATGATAATTCATCATC CTCATGCGATGATGGTACCATTATTGGGAGTGAAGAAGCTCTCCCCCATGTTGAAGCAAGAGTGTCAGAGAAGGACGTGC TCCTCCGATTACACTGCAAAAAGCAAAAGGGGCTTTTGCTGAAAATATTGTTTGAGATTCAAAACCTTCATCTCTTTGTC GTCAATAGCAGTGTCCTTCCTTTTGGAGATTCCATCCTTGACATTACAATTGTTGCTCAGATAGGAGCAGAATACAACTT GACCATAAACGAACTAGTAAAAAATTTGCGAGTGGCTGCATTGAGATCCATGTCTTCATAA
Protein sequence (LotjaGi2g1v0414000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKLNTPTEASSSCWLSDLLLQEMDDCNFFQQCNPNLLGDEEFLSHDIVSAFQSDNLQQQQQPLSSESYSSYPVSNSETV WNSSTDETCFERPAKQQKTKHVLPDQSNSSSPSSPTSQILSFENTHLYGLDCSLNPNLQNEGVSVSTPQLRNVNFPAQNR KGSTQNQNFETITNPQGKGSKKSHGQDHIIAERRRREKLSQSLIALAALIPGLKKMDKASVLGDAIKYVKVLKERLRLLE EQNKNRAMESVVVVNKPQISNDDNSSSSCDDGTIIGSEEALPHVEARVSEKDVLLRLHCKKQKGLLLKILFEIQNLHLFV VNSSVLPFGDSILDITIVAQIGAEYNLTINELVKNLRVAALRSMSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 364 | 358 | 2.3E-125 | – | |
| PANTHER | 7 | 364 | 358 | 2.3E-125 | – | |
| MobiDBLite | 56 | 77 | 22 | - | – | |
| MobiDBLite | 92 | 118 | 27 | - | – | |
| MobiDBLite | 100 | 118 | 19 | - | – | |
| MobiDBLite | 157 | 185 | 29 | - | – | |
| MobiDBLite | 157 | 180 | 24 | - | – | |
| Gene3D | 174 | 234 | 61 | 2.2E-14 | ||
| ProSiteProfiles | 183 | 232 | 50 | 14.811 | ||
| SUPERFAMILY | 187 | 249 | 63 | 1.83E-15 | ||
| Pfam | 188 | 232 | 45 | 1.6E-8 | ||
| CDD | 188 | 237 | 50 | 9.27657E-12 | ||
| SMART | 189 | 238 | 50 | 8.0E-12 | ||
| Coils | 229 | 249 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi2g1v0414000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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