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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0415500 |
| Transcript ID | LotjaGi2g1v0415500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain protein,; TAIR: AT4G17980.2 NAC domain containing protein 71; Swiss-Prot: sp|Q9FFI5|NAC86_ARATH NAC domain-containing protein 86; TrEMBL-Plants: tr|G7JZX4|G7JZX4_MEDTR NAC transcription factor-like protein; Found in the gene: LotjaGi2g1v0415500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91322178..91325002) extracted from Lotus japonicus Gifu genome v1.2.
ATCACACCATCACTACCATCTTATACTCTACTCTCTCTTCTCTTCCTCATCACTCTCAACTCACTCATCTATCAGCAACT GCTTACTTTTCAATTTGATTTATTTTTCAATTCTAGTGTTTGAAACTTTCAACTGTTGGAAAAATAGTGACTTATCCAAC ATCAACTTTTGGAAATATTTTCATAGCTCTTCTCAAATTTTCAAACTTTTGAATATTGAATTTTTTGGGTAGGGGTTGGG GGTGAGATAGCTTCATTAGAGACCTTGAATTTCTTTCAAAACGATGATTCTGGCGCATAATGGATGCACTCCATTGAAGT GTCACCTCACTCTTGATAAAAATTATATTGTATACAAAAGTTTTTATTTTTGGATTTTCCAGATATTTGATAGGTATAGT TTGGGTACTTAACAGTACCAGAAGTTCTGTTTACATCTTTCCAACATATCTGGAATCTGGATTCACATTTTTTTTTGGGT TTATTTTTAAACTGATATTGGGAGATACTAGAGCTTTCAATAGCTTTGTTTAGTCAATTTCACTTGCACAAAAATTTAGA ATGGGAGGGTTGCCTCCAGGTTTTCGTTTTCATCCAACTGATGAAGAACTGCTAGGCTATTACCTGAATAGGAAAGTTGA GGGTCTTGAAATTGAGCTTGAAGTTATCCCTGAGATTGATTTCTACAAATTTGATCCTTGGGAGTTGCCTGGTAATCTTC AATTTCATATGCTGCTGATCATGTGCAACAGTAAAAAAAAAATAGTATAAGGGAAAAGAAAATCTTTCAAGCTAGTGTGA ACTTAGACTTTATAACTTTATGAATGCTAGAAAGTAGAAACCAGTGTTTGATTACTTTTTATGCACTTTACTTTGAGAAG CCTAATTTGTGTGAGGTGTGGAATGCAGATAAATCTTTCCTTCCAAGAAGAGATTTGGACTGGTTCTTCTTCTGTCCGCG AGATCGCAAGTACCCAAATGGATCAAGGACAAATAGAGCTACCAAAGCTGGCTATTGGAAAGCCACTGGAAAAGACAGGA AAGTTGTGTGCCACCCTAGTCCATTCACTTCGCCCGTGACAGTGACCGGGTACCGGAAGACCCTTGTGTTTTATCGCGGA AGGGCCCCCTTAGGGGATCGAACGGATTGGGTCATGCATGAGTATCGCCTTTGTGATGATCCTGGCCAAGGTCCACAGGT AAAAAGTTTTTCCTTATAGCATGTTTAGATCAACTTCTATATCTTTAGAATCCATTCTGAAATCCAGAAGCTACACACAG AAGCCTCTCAATAGAATTGATTCTAACTTTAGAATCAATTATAGAAAATTTTCACTTAGTTGCATTTCATGGGTTAGCTT GGGATTGTTCTGAATTTTTGCTTCTTGGGGTAACTTTGTAGGGTGCTTTTGCTTTGTGCCGAGTTATGAAAAAGAATGAG AAGGCCAATGAGAAAGGTAAAGGCAGGGCTGGGAACAATGGTAGTACCACCAATGGGAATGACACCTCAATGAGATTCTC CAACTCTGGTGACATTTCCTCTCTTTCAAGTCCTATTGATTCTCCAAGCCATATGGCTCCGGTGTCCGGGTTTGAGCAAG CTTCAACGGACACCAATTCTTCTAGCTTCTGGCTCTCTCCTGATATGATTCTTGATTCTTCAAAGGTATTTGTGTTATGT ATGAATGTTGTATAAGGAAATTTGAGATTGAATAGCTAGATGTTAGAGAAGTTTCTCTTGACAAATTTCCTCCTCCAAAT ACAGGAATACTCTCAAACACAAGATGTTGTTGGATACTTTTCACAGCATGACTTAATGAACACAACAACACCTTGTCAAT CATTTGGACATGCTGAAATATCACCGAGTTCATCCTACTCTAATTTTAATGGGGAAACTGAATTTTCTGATGCTCTCATG TCACCTTACTCTGGACAAGGAATCTTCATGGACTTGTGTGTAAATGAAGATATGGCTTATGAATACTATGACCAAATTAA TTCAATCAGTGATCCAAAACAATTCTGAAAAGAAAAAGAAGTGCATATGAGTTGGGATCAAGCTCCAATTTGCAGAAAAG GTGGCCATGGGAGTCTAGGAGAGCTTAGTGGTCTGTGGTTGCAGGAAGACAATTCAAATGATTGTGAACTTGTGACATGA GGGGTTGGAAAAGATGTCTGAGACAACTCCTTTTAATGTATGTCTTGGAGTGATAAAATAATGAGTACAATCCCCTTCAG ATGCACCACAGGCAGAAGCTACTCTCTTCTTCAAGTGCTTTAGACTAAGTTTATCATCTATGGTGTTATGTAGGATTCAG GGTGACATCACTTTTATCGATTTCACCTTAAGTTGGTTTGTATTCATTGTATGTGTGGCTTTATAATCAAGGAGGACTTC TTATATATGCTTGTCTAATTTGTGGGACCATGAACTGGTGTTGGATATTGAAACATTGCTTCTATTAGTCTTATTGCTGT ATAATTATATCAGACTTCATTGCAGTAAGACAACAGGTTTTAAGATGATTTTCTGTTCCCGCCATCAACAGGAGAAAAAA AAAAAGGGTATGGTTAATTTTGAAAAGCTTCAAGTGAAAACTAACATGAAGGAGATTATGCATGTGAACAAAGTAGGAAT CCTGTTTCTACTTTCAGTTGCAAGAGCCGCATTTTATCTTTTTCATGTATCATTTCAGAGTTCTCTTTTAGGGACAAAGT TAAGGGTAAGTGTTGATTAGACATTTCAGATTTCCAGCGTGTAGTTTCCTCGAGAATCATCCATCCAACAAACTGTTGGA TACACACGTGAGAATCCAAGATGGG
CDS sequence (LotjaGi2g1v0415500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGGGTTGCCTCCAGGTTTTCGTTTTCATCCAACTGATGAAGAACTGCTAGGCTATTACCTGAATAGGAAAGTTGA GGGTCTTGAAATTGAGCTTGAAGTTATCCCTGAGATTGATTTCTACAAATTTGATCCTTGGGAGTTGCCTGATAAATCTT TCCTTCCAAGAAGAGATTTGGACTGGTTCTTCTTCTGTCCGCGAGATCGCAAGTACCCAAATGGATCAAGGACAAATAGA GCTACCAAAGCTGGCTATTGGAAAGCCACTGGAAAAGACAGGAAAGTTGTGTGCCACCCTAGTCCATTCACTTCGCCCGT GACAGTGACCGGGTACCGGAAGACCCTTGTGTTTTATCGCGGAAGGGCCCCCTTAGGGGATCGAACGGATTGGGTCATGC ATGAGTATCGCCTTTGTGATGATCCTGGCCAAGGTCCACAGGGTGCTTTTGCTTTGTGCCGAGTTATGAAAAAGAATGAG AAGGCCAATGAGAAAGGTAAAGGCAGGGCTGGGAACAATGGTAGTACCACCAATGGGAATGACACCTCAATGAGATTCTC CAACTCTGGTGACATTTCCTCTCTTTCAAGTCCTATTGATTCTCCAAGCCATATGGCTCCGGTGTCCGGGTTTGAGCAAG CTTCAACGGACACCAATTCTTCTAGCTTCTGGCTCTCTCCTGATATGATTCTTGATTCTTCAAAGGAATACTCTCAAACA CAAGATGTTGTTGGATACTTTTCACAGCATGACTTAATGAACACAACAACACCTTGTCAATCATTTGGACATGCTGAAAT ATCACCGAGTTCATCCTACTCTAATTTTAATGGGGAAACTGAATTTTCTGATGCTCTCATGTCACCTTACTCTGGACAAG GAATCTTCATGGACTTGTGTGTAAATGAAGATATGGCTTATGAATACTATGACCAAATTAATTCAATCAGTGATCCAAAA CAATTCTGA
Protein sequence (LotjaGi2g1v0415500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGLPPGFRFHPTDEELLGYYLNRKVEGLEIELEVIPEIDFYKFDPWELPDKSFLPRRDLDWFFFCPRDRKYPNGSRTNR ATKAGYWKATGKDRKVVCHPSPFTSPVTVTGYRKTLVFYRGRAPLGDRTDWVMHEYRLCDDPGQGPQGAFALCRVMKKNE KANEKGKGRAGNNGSTTNGNDTSMRFSNSGDISSLSSPIDSPSHMAPVSGFEQASTDTNSSSFWLSPDMILDSSKEYSQT QDVVGYFSQHDLMNTTTPCQSFGHAEISPSSSYSNFNGETEFSDALMSPYSGQGIFMDLCVNEDMAYEYYDQINSISDPK QF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 322 | 320 | 6.3E-135 | – | |
| PANTHER | 3 | 322 | 320 | 6.3E-135 | – | |
| SUPERFAMILY | 3 | 158 | 156 | 4.18E-57 | ||
| ProSiteProfiles | 4 | 158 | 155 | 57.028 | ||
| Pfam | 5 | 138 | 134 | 1.7E-36 | ||
| Gene3D | 13 | 164 | 152 | 1.2E-52 | ||
| MobiDBLite | 162 | 213 | 52 | - | – | |
| MobiDBLite | 169 | 213 | 45 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0415500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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