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LotjaGi2g1v0415500.2

Overview

Field	Value
Gene ID	LotjaGi2g1v0415500
Transcript ID	LotjaGi2g1v0415500.2
Related isoforms 1	LotjaGi2g1v0415500.1
Lotus japonicus genome version	Gifu v1.2
Description	NAC domain protein,; TAIR: AT4G17980.2 NAC domain containing protein 71; Swiss-Prot: sp\|Q9FFI5\|NAC86_ARATH NAC domain-containing protein 86; TrEMBL-Plants: tr\|G7JZX4\|G7JZX4_MEDTR NAC transcription factor-like protein; Found in the gene: LotjaGi2g1v0415500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:91322579..91324957) extracted from Lotus japonicus Gifu genome v1.2.

CTCATCACTCTCAACTCACTCATCTATCAGCAACTGCTTACTTTTCAATTTGATTTATTTTTCAATTCTAGTGTTTGAAA CTTTCAACTGTTGGAAAAATAGTGACTTATCCAACATCAACTTTTGGAAATATTTTCATAGCTCTTCTCAAATTTTCAAA CTTTTGAATATTGAATTTTTTGGGTAGGGGTTGGGGGTGAGATAGCTTCATTAGAGACCTTGAATTTCTTTCAAAACGAT GATTCTGGCGCATAATGGATGCACTCCATTGAAGTGTCACCTCACTCTTGATAAAAATTATATTGTATACAAAAGTTTTT ATTTTTGGATTTTCCAGATATTTGATAGGTATAGTTTGGGTACTTAACAGTACCAGAAGTTCTGTTTACATCTTTCCAAC ATATCTGGAATCTGGATTCACATTTTTTTTTGGGTTTATTTTTAAACTGATATTGGGAGATACTAGAGCTTTCAATAGCT TTGTTTAGTCAATTTCACTTGCACAAAAATTTAGAATGGGAGGGTTGCCTCCAGGTTTTCGTTTTCATCCAACTGATGAA GAACTGCTAGGCTATTACCTGAATAGGAAAGTTGAGGGTCTTGAAATTGAGCTTGAAGTTATCCCTGAGATTGATTTCTA CAAATTTGATCCTTGGGAGTTGCCTGGTAATCTTCAATTTCATATGCTGCTGATCATGTGCAACAGTAAAAAAAAAATAG TATAAGGGAAAAGAAAATCTTTCAAGCTAGTGTGAACTTAGACTTTATAACTTTATGAATGCTAGAAAGTAGAAACCAGT GTTTGATTACTTTTTATGCACTTTACTTTGAGAAGCCTAATTTGTGTGAGGTGTGGAATGCAGATAAATCTTTCCTTCCA AGAAGAGATTTGGACTGGTTCTTCTTCTGTCCGCGAGATCGCAAGTACCCAAATGGATCAAGGACAAATAGAGCTACCAA AGCTGGCTATTGGAAAGCCACTGGAAAAGACAGGAAAGTTGTGTGCCACCCTAGTCCATTCACTTCGCCCGTGACAGTGA CCGGGTACCGGAAGACCCTTGTGTTTTATCGCGGAAGGGCCCCCTTAGGGGATCGAACGGATTGGGTCATGCATGAGTAT CGCCTTTGTGATGATCCTGGCCAAGGTCCACAGGTAAAAAGTTTTTCCTTATAGCATGTTTAGATCAACTTCTATATCTT TAGAATCCATTCTGAAATCCAGAAGCTACACACAGAAGCCTCTCAATAGAATTGATTCTAACTTTAGAATCAATTATAGA AAATTTTCACTTAGTTGCATTTCATGGGTTAGCTTGGGATTGTTCTGAATTTTTGCTTCTTGGGGTAACTTTGTAGGGTG CTTTTGCTTTGTGCCGAGTTATGAAAAAGAATGAGAAGGCCAATGAGAAAGGTAAAGGCAGGGCTGGGAACAATGGTAGT ACCACCAATGGGAATGACACCTCAATGAGATTCTCCAACTCTGGTGACATTTCCTCTCTTTCAAGTCCTATTGATTCTCC AAGCCATATGGCTCCGGTGTCCGGGTTTGAGCAAGCTTCAACGGACACCAATTCTTCTAGCTTCTGGCTCTCTCCTGATA TGATTCTTGATTCTTCAAAGGTATTTGTGTTATGTATGAATGTTGTATAAGGAAATTTGAGATTGAATAGCTAGATGTTA GAGAAGTTTCTCTTGACAAATTTCCTCCTCCAAATACAGGAATACTCTCAAACACAAGATGTTGTTGGATACTTTTCACA GCATGACTTAATGAACACAACAACACCTTGTCAATCATTTGGACATGCTGAAATATCACCGAGTTCATCCTACTCTAATT TTAATGGGGAAACTGAATTTTCTGATGCTCTCATGTCACCTTACTCTGGACAAGGAATCTTCATGGACTTGTGTGTAAAT GAAGATATGGCTTATGAATACTATGACCAAATTAATTCAATCAGTGATCCAAAACAATTCTGAAAAGAAAAAGAAGTGCA TATGAGTTGGGATCAAGCTCCAATTTGCAGAAAAGGTGGCCATGGGAGTCTAGGAGAGCTTAGTGGTCTGTGGTTGCAGG AAGACAATTCAAATGATTGTGAACTTGTGACATGAGGGGTTGGAAAAGATGTCTGAGACAACTCCTTTTAATGTATGTCT TGGAGTGATAAAATAATGAGTACAATCCCCTTCAGATGCACCACAGGCAGAAGCTACTCTCTTCTTCAAGTGCTTTAGAC TAAGTTTATCATCTATGGTGTTATGTAGGATTCAGGGTGACATCACTTTTATCGATTTCACCTTAAGTTGGTTTGTATTC ATTGTATGTGTGGCTTTATAATCAAGGAGGACTTCTTATATATGCTTGTCTAATTTGTG

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0415500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTAGAAAGTAGAAACCAGTGTTTGATTACTTTTTATGCACTTTACTTTGAGAAGCCTAATTTGTGTGAGGTGTGGAA TGCAGATAAATCTTTCCTTCCAAGAAGAGATTTGGACTGGTTCTTCTTCTGTCCGCGAGATCGCAAGTACCCAAATGGAT CAAGGACAAATAGAGCTACCAAAGCTGGCTATTGGAAAGCCACTGGAAAAGACAGGAAAGTTGTGTGCCACCCTAGTCCA TTCACTTCGCCCGTGACAGTGACCGGGTACCGGAAGACCCTTGTGTTTTATCGCGGAAGGGCCCCCTTAGGGGATCGAAC GGATTGGGTCATGCATGAGTATCGCCTTTGTGATGATCCTGGCCAAGGTCCACAGGGTGCTTTTGCTTTGTGCCGAGTTA TGAAAAAGAATGAGAAGGCCAATGAGAAAGGTAAAGGCAGGGCTGGGAACAATGGTAGTACCACCAATGGGAATGACACC TCAATGAGATTCTCCAACTCTGGTGACATTTCCTCTCTTTCAAGTCCTATTGATTCTCCAAGCCATATGGCTCCGGTGTC CGGGTTTGAGCAAGCTTCAACGGACACCAATTCTTCTAGCTTCTGGCTCTCTCCTGATATGATTCTTGATTCTTCAAAGG AATACTCTCAAACACAAGATGTTGTTGGATACTTTTCACAGCATGACTTAATGAACACAACAACACCTTGTCAATCATTT GGACATGCTGAAATATCACCGAGTTCATCCTACTCTAATTTTAATGGGGAAACTGAATTTTCTGATGCTCTCATGTCACC TTACTCTGGACAAGGAATCTTCATGGACTTGTGTGTAAATGAAGATATGGCTTATGAATACTATGACCAAATTAATTCAA TCAGTGATCCAAAACAATTCTGA

Download CDS Sequence

Protein sequence (LotjaGi2g1v0415500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLESRNQCLITFYALYFEKPNLCEVWNADKSFLPRRDLDWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCHPSP FTSPVTVTGYRKTLVFYRGRAPLGDRTDWVMHEYRLCDDPGQGPQGAFALCRVMKKNEKANEKGKGRAGNNGSTTNGNDT SMRFSNSGDISSLSSPIDSPSHMAPVSGFEQASTDTNSSSFWLSPDMILDSSKEYSQTQDVVGYFSQHDLMNTTTPCQSF GHAEISPSSSYSNFNGETEFSDALMSPYSGQGIFMDLCVNEDMAYEYYDQINSISDPKQF

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
ProSiteProfiles	PS51005 View details on PS51005 Search for proteins/transripts with this domain View external data on PS51005	1	136	136	35.477	IPR003441 Show description in modal box View details on IPR003441 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.30.310.150 View details on G3DSA:3.30.310.150 Search for proteins/transripts with this domain View external data on G3DSA:3.30.310.150	9	142	134	4.2E-35	IPR036093 Show description in modal box View details on IPR036093 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR31989:SF250 View details on PTHR31989:SF250 Search for proteins/transripts with this domain View external data on PTHR31989:SF250	28	300	273	1.8E-97	–
PANTHER	PTHR31989 View details on PTHR31989 Search for proteins/transripts with this domain View external data on PTHR31989	28	300	273	1.8E-97	–
Pfam	PF02365 View details on PF02365 Search for proteins/transripts with this domain View external data on PF02365	34	116	83	4.0E-18	IPR003441 Show description in modal box View details on IPR003441 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF101941 View details on SSF101941 Search for proteins/transripts with this domain View external data on SSF101941	34	136	103	2.75E-34	IPR036093 Show description in modal box View details on IPR036093 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	140	191	52	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	147	191	45	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of View details of GO:0003676
GO:0006355 View details of GO:0006355 AmiGO InterPro QuickGO	Biological process	Regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.	Subterm of View details of GO:0010468 View details of GO:1903506 View details of GO:2000112 Regulates View details of GO:0006351

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0415500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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