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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0416500 |
| Transcript ID | LotjaGi2g1v0416500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein sorting-associated protein 55 like; TAIR: AT1G32410.1 Vacuolar protein sorting 55 (VPS55) family protein; Swiss-Prot: sp|Q9AST6|VSP55_ARATH Vacuolar protein sorting-associated protein 55 homolog; TrEMBL-Plants: tr|I3T099|I3T099_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0416500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91441253..91443869) extracted from Lotus japonicus Gifu genome v1.2.
AGATATAGATTGGACAAAATAAGGTAAAGACGGAGGATTCTTGAAAGATTGGACCGCTACGCTACTCTGTATCGGAGGCA GAGATTTGGGCCGATGATGGATGCATAAATCAATCATTCAAACCTAAATAAAAGCATCCTCAAACCCCAACAACAAACCC TTTTCAAATATCAAATTCTGCTACCAAGTTTGAGGTACGAGTTTCCGACGCTGTCTTCCAATTTCATCTGGATTTCAGCG TTACTCCTTTGTTGCTTCCTTCTTCTCACCCTGTAATATTAGGGAAATTATAATATTTTCTTAACTCTAATCTGCTCATT ATTGAAATTTGTTTAATATTTCTGCCCGTAGTTTTTTTCCTTATCTATGTGGGTTGCTTGATCAATTCAATTTCCTAATT TTTCTTCTCTATGTTATAAAGCATCGCTGCTGCTGTTTAAAACCATATTGCTTTCAATGGTGTTGCCTCTCAACAAAATA TGGCTTTTGTTTTCTTTTTGATATTGTTAGTTTGCTTGGTACTTATTATATGTAGTGTGCATCTTAGAATTCATGTTAGG CCCAACTCTATCCCCAATAGCGTGAAATTTGCATGACTAGATATTTTTTAGTGACCAAATAAACTGATCCAGGACATGTT ATGATACCATCTTAGAATTCGGGTTAAACTTAACTCTACCATTTAGAATAACTATTTTGGTCATATTTCTAATTAATATG CGACCTGAACAACTTATTTTATTATGTGGTTGAAAGCCCTATGATCACTTTAGGGAAAGTCACGAAATGTACCGTATCAG GATGTTGTACATTGTTGTATGCTTATTGCTAATCCAAACACCTACTATGCTTTATTTGCTTGTCCTTCATCTTAAGCTAC TGGATTTTGTTTATCTGTGCGGACAACCATTGTGACGATAAATGATCAATTCTGATGATAAATGATCAATGTGTGAATTG AACATGATACATAAGACTGACTTCGAGTATAGACCGCTGCTCTGTTATTTGACTTCATCTCTCTACACCAAAAAAAAAGA CTTGATCTCTTTTAACCTAGAGTTCCTAGAGTTGCTTCTTCATCTAGTATTTTCTTCTGATCTAACCCTTGTACATTATA CCCACAGGATTTTAACTTCAGTTATTACTCCCTATAACATGAGGTGACTTGGAGATGGCAGAATTACCAGGATATCTACG TTCCTGTTTGAACACAGGGAAACTTGCATTTTTGGCAATTTTAGTCTCTGGAGGAATTGTCTTGCAGATTTTGGTCAGTA TTTGTTCTTGTTTTAAGTAAATAAATAGATGGCAACTTATTGGTAAAAAGTTACTGGTTACTTACATCTGTGTTATGTTG TTAGGCATGTGCCCTGTATAATAATTGGTGGCCGATGCTAAGTGGTGAGTGAGATGAAGCATCATCATTCAGATTAAGTT TGATTCCAGTATTGTATATATTTACTTTTCTCATCAATGGGATTTTTACGGGGAGAACATCCCCTTGTTTGTTATGACAT CTGGTATTTTGCTCTCTTGCAGCTATAACTTATGTGCTTCTTCCAATGCCTTTGTTGTTCTTTGCGGGGTCTGATGGCGA TTCTATATTTTCAGAATCTGATAACAGGTAAAACCGTTATGTTTTGGCTAAATTGAAAAGTAAAATCATTCAACTCTATC ATACAACTTGTTAAATAAGCTTGATGATCACTGAAGTGAGTTTTGAATTTTATTTTAGAAAAAAGTAAAATTCTGTCTTA AGATGCGGGATTAATCATTTATCTTTTTTTTGTTTTGTGGTCTGTTGGATGCCGGAGCAGCTGGGTGAATTTTACCAAGT TCTTGACCGGATCCTCGCTTGTCGGAGGCATTGCCATTCCGAGCATATTAATCCATGCTGGGGTTATCGGTTGGGGAGCC TTTGCAATGGAACTTTCTTCCTTCTTTGTGTTTATATTAGCTGTACTGTGTTTCCTGGGGATGAGCGGTGAAGATGATTA CTACAGTATGATATGAGATGGGAGTTCAGAAGGGCTTGCTTGATCTTTGTAAAAATGCATTTGTTAATATTCATTTCTTT GCTTTGGTGAGCTTCACCTCAACATTTTTTCTCATTCGAAATATTGAAATCCATTAAGCCTCTATTATTGCGTTTAGCAA TGATTTCTAGACTCCTAATCGTAGAGGAGACTCCAAATCTTGTAAAGGCATACCAACAATTAAATCAATATTTGGAATTA TGCTTGCGAAAATGTCATTGGTAATATCGTCTTGAACACATTAAACATCAGGTATTGGCCTATGCCAATGACAGGAATGT TACAAACTTCTACTCTAGAATATAACCACAGCTTGGTTTCCCAACAAGAAGCAGTCACTTAACTATTGGCAACAATTTCC ACCAAACCAATAAAATAGAGGAAGGGCCTCACGACTGAGAATCCCAAGACTTAATTAGAGAAACTGTTATACACATTATA AAGGCATGAAAAAAAGAAAAAGTGAGCACATGGGAAACCTATTTCTTCACTTGTACCGGAAGGGGATACTCTGCAAAACA GTTTCAAGTTACTGGTTTTAGTAAAATCCCTAATTCTGAAGATGCAGAAGAAAAAAG
CDS sequence (LotjaGi2g1v0416500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAATTACCAGGATATCTACGTTCCTGTTTGAACACAGGGAAACTTGCATTTTTGGCAATTTTAGTCTCTGGAGG AATTGTCTTGCAGATTTTGGCATGTGCCCTGTATAATAATTGGTGGCCGATGCTAAGTGCTATAACTTATGTGCTTCTTC CAATGCCTTTGTTGTTCTTTGCGGGGTCTGATGGCGATTCTATATTTTCAGAATCTGATAACAGCTGGGTGAATTTTACC AAGTTCTTGACCGGATCCTCGCTTGTCGGAGGCATTGCCATTCCGAGCATATTAATCCATGCTGGGGTTATCGGTTGGGG AGCCTTTGCAATGGAACTTTCTTCCTTCTTTGTGTTTATATTAGCTGTACTGTGTTTCCTGGGGATGAGCGGTGAAGATG ATTACTACAGTATGATATGA
Protein sequence (LotjaGi2g1v0416500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAELPGYLRSCLNTGKLAFLAILVSGGIVLQILACALYNNWWPMLSAITYVLLPMPLLFFAGSDGDSIFSESDNSWVNFT KFLTGSSLVGGIAIPSILIHAGVIGWGAFAMELSSFFVFILAVLCFLGMSGEDDYYSMI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 136 | 136 | 4.9E-73 | ||
| PANTHER | 1 | 136 | 136 | 4.9E-73 | – | |
| Phobius | 1 | 16 | 16 | - | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| Phobius | 17 | 38 | 22 | - | – | |
| Pfam | 18 | 132 | 115 | 4.5E-33 | ||
| Phobius | 39 | 44 | 6 | - | – | |
| TMHMM | 44 | 61 | 18 | - | – | |
| Phobius | 45 | 62 | 18 | - | – | |
| Phobius | 63 | 81 | 19 | - | – | |
| Phobius | 82 | 106 | 25 | - | – | |
| TMHMM | 82 | 104 | 23 | - | – | |
| Phobius | 107 | 112 | 6 | - | – | |
| TMHMM | 108 | 130 | 23 | - | – | |
| Phobius | 113 | 131 | 19 | - | – | |
| Phobius | 132 | 139 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0416500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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