Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi2g1v0418400.1

Overview

Field Value
Gene ID LotjaGi2g1v0418400
Transcript ID LotjaGi2g1v0418400.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Casein kinase II subunit beta; TAIR: AT5G47080.1 casein kinase II beta chain 1; Swiss-Prot: sp|P40228|CSK2B_ARATH Casein kinase II subunit beta-1; TrEMBL-Plants: tr|V7CEG3|V7CEG3_PHAVU Casein kinase II subunit beta; Found in the gene: LotjaGi2g1v0418400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:91672139..91676552) extracted from Lotus japonicus Gifu genome v1.2.

ATTTAACACTCTTCATTGAAATTCATGTAAAGTTCACTAAAATTATAGATTTTTTTTCTAATTTAGTAGAATCCACATGA ATTTTAACCTATTGAATAAAGAGTATTAAAACTAGTGTGTAGCACTTTTCACATAGTAGAATGTTTTACACCGATAGCAC ATAGGATCATAAAGGTGTCCAGAAGATACAAGAGATTAATCTTTTATTTATTTTCTCGGATGAAGAGATTAGTGGTTTTT GGTAGCAAGAAAAATAAAAGGAAATGAAATGAAAGCAATAAAAGATAAATAGGTTGAAAGGAAAAGAAGAAAAAAGAAAA ATATCTTCCCATCCACTCCGAAACAAAAGCACTAAATGTGGAAAAATAAATAAAATAATTTGTCAGGAATAGAATAACAA AAACTCGGGTGGAACAACAACAAGAACGAACGAACGAACGAATCATCAATCATCGTTTTCATGTTTCAATCTCAATTGAT TGTGTTGCTGTTATATTCATTCTAACTAGTTCATCAATTCAATTCATCATCATCATCATCATCATCATCGTTCTCTGAAT CAAAACCCTACCGAGAGAGAGAGAGAGAGAGAGAGCAGTTATTATGTACAGAGACCGTGGCGGTGCCGTTGGATCCAAAT CCGAGGTGGCGCCTCCCGTTGATCGGAAGCGAATCAACGACGTCCTCGACAAGCAGCTCGAACGATCCTCACCCTCCACT TCCCGCCCTATCAACGCCAAGGACAGGGCCTCTCTCTTGTCCTCCACCGCCCACAGGGACTCTCGCAACCCTGCTCCTCC CCCTATCTCCAAGAATTCCAACGCTTCTGATGGTTCGATTCTCATTTCTCCTTCTCTTTTCACGATCTGATCTATTTTTT ATTCAATTTTTTTTAATTACTTTGTTTTAGGTTTTAATTCATCTTATCTATGAGCTGCTAATAACTTTACTTTTTTACTT CAAACACTAATTTAGAGATTCAGAGTTCAATTCGTGTAATTAGAAAATCATTAGTTAAATTTTTCTTAATCTTTTAGCTT TAGGTTTTTAATAACACTGAATTTGATTTGGATTTTGGGTGACAAACTTCAGATAGGTGAAGTGTGAATGTGTAATGTAC CCCAAGTTTTGTTTGGTTGCTTGCATGAATAGCATTAGTGTATGTTTGGTGTCCGGATAAACTTCATGCCGATCCGCGTT TGAGTGGACGTAGCAAAATCTTGTTTCTCCGTTGATTAGTTAAGATGTGTGTTTCCCCAACAATAATTAAAGTCTTATCC CATTAAGTGAGGTCGGCTACATGGATCATCTGACGGCCGACCGACGCTATTACGTTTGATCGAAAACCAAATTCCGTGGA ATATTATTGACCCTGAGGTTGCTTTAATGATATCTTCCAACGTTCTTTTTGGCATCCCTCTACCCCAATGCGCTAATGTG TGTTGGCAATTTTTTTAATGTTTGGTTGTTGGCATGAATAACTAACTTCATTTTAGCTGCAGAGGAATCTGAAACAGACA GTGAAGAGTCTGATGTTAGCGGTTCTGACGGAGAGGACACGTCTTGGATCTCGTGGTTCTGTAATTTGAGAGGAAATGAG TTCTTTTGCGAGGTTGACGATGATTACATCCAAGACGATTTCAACCTTTGTGGGTTGAGCAGTCAAGTGCCTTACTATGA TTATGCACTCGATTTAATTTTGGATGTCGAATCCTCCCATGGTAAGCTTATGTTTATTATATGTTTTGCCGATACTAGTG CGGTGATTCTGTTTTGATTCAAATTCAAATGTCTGCGGTGCTGATGAACACCTATGACCTATCCGATCATTTTGTACTTA GGTGACATGTTTACGGAGGAACAAAATGAGTTAATTGAATCAGCAGCGGAGATGCTGTATGGTCTGATTCATGCCCGGTA CATTTTGACAAGCAAAGGAATGGCTGCCATGGTATGATTTTTATGTCTCTGGTTACTGTCATTTTATCACTTCACTGTTG ATAAGGTTGTACTGTACTATTACTGATGTTGGAATTTTTGCAGCTGGACAAATACAAGAACTATGATTTTGGAAGATGCC CAAGAGTTTACTGCTCTGGACAACCTTGTCTTCCAGTTGGCCAGTCAGACATTCCAAGGTCTAGTACTGTGAAAATTTAT TGCCCTAGGTGTGAAGACATTTACTATCCTCGGTCCAAATATCAAGGCAGTATCCTTATACATGTTATAAAATGATGTGT TGGTTTAAGTTGAGTATGCATCGACATGCGTGGCAAATTTTTATTTTTGATTCTCCTGCACATCTCACCTCTTCCTTGGT TTTGACTTATAAGTAGTTTGTAGAGAGGCATTTCTTTCTAAATTTTGATTTTTTGGCAATTCACCCCCATGTGGATATCA TCTGTTGTTTACTATTTGCAATGTGGACCGAAGGTATTAAATGTCTAAAAGAATTAGGCTGATAATTCCTGTCACCAATA TACACTATGCTGGTCTATAATGGGATGAGAGTAATAATCAAATGATGAATGACTTAATTTTGGGATTTGATATTCATTAT CTGATCTCTTGACAAGTTATATCTGACATAGGGAAAGTGTTTTATGACTGCCTGAAATTGGTATTTTATTTTCTTGTTAA TTATATTCTGCAAATTTAGTTTCAGCTGTCTTCTCCTTGTATATCTCAAGCTTGGGAGCAGTTTGGGATCCTTTGGGCCC ATTCAAATTTAGGAACATGTATTTATTACCAAATTTATGGTAATTCTAAAAACTACAAGCTTTTCAAAAAAAAAAACTAC AAGGAAAAAACTGCAGAAAAAAGAACACTTTAAATGCTGGCAAACATTAAGGTGTTTTTTTTCTTGCTTCCACTCTATTA CTCATTTTTTACATCCTGATATGTGTGTATTTTGGGATGATTGATTGCATTTGCATGTCCCTATAGTTTTGCAATATAAT TGTGGCTTAAATTTATGGTATCATATATGCTTCCCAAATTTTCCTTGAGTCTGTTCTAGACATTGATGGAGCTTATTTTG GTACTACATTTCCTCACCTGTTCCTGATGACTTATGGACAACTGAAGCCACAGAAACCATCACAGAGCTACGTTCCGAGA GTTTTTGGCTTTAAGCTTCACAAGCCATGAGGCGAAACTTCCGAGAAAGTAAGAGTTTGCCCATGCCTTGTTTAACTCTT TCTCAGCACTCGTCGCAACAACATGAGCTTTCCAAATCCGCACAATACAAAAATTCTGTTTTATTTGTTTTAGGAGCGTG TTGTAAAGTACATTGCAGACATGTCATGCAAATGCTTAGTTTCTATTTCAGCTTGGAATTCAACCAGCTTCAACTTCAAT GAGCAAGTGCATAGGTACTTCAGTGCACTTTGATTTACTTATGATTAATCTCAGATTACAGAACCCCCCCCCCCCCCCCC TATTTTATATTTTTTTATTCCAATTCCTCTCCTTGCACATTAACGGCAGCATTTGAATTTGTGGATTGCATTTTGATGGG TTCACACATTGTAGTCTAATTTTATAATTCTACACATCGATAATGAATATATAGATGTGAAATACTATAAGTTCCTGGTT TCTGTGGATGCCTTGCTTGTGTGGCAACATGAGTACTCTCTTGGTGTGGAAGAAAGAATGGTGACATTCTCTTAACTCTG ATTATATGTATTAGTTAAATAGAAGAGTTGAACTGTCAAGTGTGATTACATTCTCATTCAAGAGTTATTGTGTGGTCACA ATAATTTCAGAAGCTACTTGCAACTTCTTCACAGAAGTGATTACAGGGTTTCAACCACAGAAATAAACACACTATTAGTT GGACTAACCCTTATTCGAAGGGCACATTTTGCTTTTCTAAGTAATTTTGCTGAATCTCTACTTTTGGGGAGTGGCTAATA TTCCCACCTAATGGGATCATGAGACGAGCTACTCAGCCAGCTACAAGTCAAACTATACACAATCCCTGTTTTGGCCGCTA TTTTTCTGTTTATTCCTTCAATTAAACACAAGTTCAAATGATAGGTGTAAAATTCAGATTGAGAATAGTTAAAAGGTCAA GGCCTGATTCCACGATATGAGAAAAATAAAGCAAGACTAAAAATTAAGAATATATAAAACCAGATATCATGATAGAGAAC ATAAATGGTTTCTTCCAAGCACATTGGTATGGGAAGCTAATGAATAATCATGGTTGTGTGGCGATTGCGTGGGGTTCCCG TGGTTTTTACATAAAAATAAAATTAGTTGGTAATTACGTGTATGTTGGAAAACAATAGATTTCCATGTTGAAAGAAGTGC TTCTTAAACAAGATTTAGAGCATTTTTTATACACTGCGGATAGAAAGCAACAAAAATTAAAAAACTTGTTTTTTGTTAAT CATGATTTTTGGTT
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0418400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTACAGAGACCGTGGCGGTGCCGTTGGATCCAAATCCGAGGTGGCGCCTCCCGTTGATCGGAAGCGAATCAACGACGT CCTCGACAAGCAGCTCGAACGATCCTCACCCTCCACTTCCCGCCCTATCAACGCCAAGGACAGGGCCTCTCTCTTGTCCT CCACCGCCCACAGGGACTCTCGCAACCCTGCTCCTCCCCCTATCTCCAAGAATTCCAACGCTTCTGATGAGGAATCTGAA ACAGACAGTGAAGAGTCTGATGTTAGCGGTTCTGACGGAGAGGACACGTCTTGGATCTCGTGGTTCTGTAATTTGAGAGG AAATGAGTTCTTTTGCGAGGTTGACGATGATTACATCCAAGACGATTTCAACCTTTGTGGGTTGAGCAGTCAAGTGCCTT ACTATGATTATGCACTCGATTTAATTTTGGATGTCGAATCCTCCCATGGTGACATGTTTACGGAGGAACAAAATGAGTTA ATTGAATCAGCAGCGGAGATGCTGTATGGTCTGATTCATGCCCGGTACATTTTGACAAGCAAAGGAATGGCTGCCATGCT GGACAAATACAAGAACTATGATTTTGGAAGATGCCCAAGAGTTTACTGCTCTGGACAACCTTGTCTTCCAGTTGGCCAGT CAGACATTCCAAGGTCTAGTACTGTGAAAATTTATTGCCCTAGGTGTGAAGACATTTACTATCCTCGGTCCAAATATCAA GGCAACATTGATGGAGCTTATTTTGGTACTACATTTCCTCACCTGTTCCTGATGACTTATGGACAACTGAAGCCACAGAA ACCATCACAGAGCTACGTTCCGAGAGTTTTTGGCTTTAAGCTTCACAAGCCATGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0418400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MYRDRGGAVGSKSEVAPPVDRKRINDVLDKQLERSSPSTSRPINAKDRASLLSSTAHRDSRNPAPPPISKNSNASDEESE TDSEESDVSGSDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNEL IESAAEMLYGLIHARYILTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQ GNIDGAYFGTTFPHLFLMTYGQLKPQKPSQSYVPRVFGFKLHKP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11740:SF18
1 283 283 3.9E-167 –
MobiDBLite
mobidb-lite
1 94 94 - –
PANTHER
PTHR11740
1 283 283 3.9E-167
IPR000704
MobiDBLite
mobidb-lite
16 30 15 - –
MobiDBLite
mobidb-lite
31 74 44 - –
Gene3D
G3DSA:1.10.1820.10
90 194 105 5.7E-44
IPR016149
SUPERFAMILY
SSF57798
95 283 189 7.19E-83
IPR035991
Pfam
PF01214
97 280 184 5.7E-82
IPR000704
SMART
SM01085
97 280 184 2.0E-130
IPR000704
PRINTS
PR00472
97 113 17 2.5E-66
IPR000704
PRINTS
PR00472
114 128 15 2.5E-66
IPR000704
PRINTS
PR00472
169 190 22 2.5E-66
IPR000704
PRINTS
PR00472
194 215 22 2.5E-66
IPR000704
Gene3D
G3DSA:2.20.25.20
195 269 75 5.5E-36 –
ProSitePatterns
PS01101
198 229 32 -
IPR000704
PRINTS
PR00472
216 237 22 2.5E-66
IPR000704
PRINTS
PR00472
244 261 18 2.5E-66
IPR000704

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005956
Cellular component Protein kinase CK2 complex A protein complex that possesses protein serine/threonine kinase activity, and contains two catalytic alpha subunits and two regulatory beta subunits. Protein kinase CK2 complexes are found in nearly every subcellular compartment, and can phosphorylate many protein substrates in addition to casein.
Subterm of
GO:0019887
Molecular function Protein kinase regulator activity Modulates the activity of a protein kinase, an enzyme which phosphorylates a protein.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0418400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…