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LotjaGi2g1v0418400.2

Overview

Field Value
Gene ID LotjaGi2g1v0418400
Transcript ID LotjaGi2g1v0418400.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Casein kinase II subunit beta; TAIR: AT4G17640.1 casein kinase II beta chain 2; Swiss-Prot: sp|P40229|CSK2C_ARATH Casein kinase II subunit beta-2; TrEMBL-Plants: tr|I1LGW0|I1LGW0_SOYBN Casein kinase II subunit beta; Found in the gene: LotjaGi2g1v0418400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:91673403..91675949) extracted from Lotus japonicus Gifu genome v1.2.

ATGTACAGAGACCGTGGCGGTGCCGTTGGATCCAAATCCGAGGTGGCGCCTCCCGTTGATCGGAAGCGAATCAACGACGT CCTCGACAAGCAGCTCGAACGATCCTCACCCTCCACTTCCCGCCCTATCAACGCCAAGGACAGGGCCTCTCTCTTGTCCT CCACCGCCCACAGGGACTCTCGCAACCCTGCTCCTCCCCCTATCTCCAAGAATTCCAACGCTTCTGATGGTTCGATTCTC ATTTCTCCTTCTCTTTTCACGATCTGATCTATTTTTTATTCAATTTTTTTTAATTACTTTGTTTTAGGTTTTAATTCATC TTATCTATGAGCTGCTAATAACTTTACTTTTTTACTTCAAACACTAATTTAGAGATTCAGAGTTCAATTCGTGTAATTAG AAAATCATTAGTTAAATTTTTCTTAATCTTTTAGCTTTAGGTTTTTAATAACACTGAATTTGATTTGGATTTTGGGTGAC AAACTTCAGATAGGTGAAGTGTGAATGTGTAATGTACCCCAAGTTTTGTTTGGTTGCTTGCATGAATAGCATTAGTGTAT GTTTGGTGTCCGGATAAACTTCATGCCGATCCGCGTTTGAGTGGACGTAGCAAAATCTTGTTTCTCCGTTGATTAGTTAA GATGTGTGTTTCCCCAACAATAATTAAAGTCTTATCCCATTAAGTGAGGTCGGCTACATGGATCATCTGACGGCCGACCG ACGCTATTACGTTTGATCGAAAACCAAATTCCGTGGAATATTATTGACCCTGAGGTTGCTTTAATGATATCTTCCAACGT TCTTTTTGGCATCCCTCTACCCCAATGCGCTAATGTGTGTTGGCAATTTTTTTAATGTTTGGTTGTTGGCATGAATAACT AACTTCATTTTAGCTGCAGAGGAATCTGAAACAGACAGTGAAGAGTCTGATGTTAGCGGTTCTGACGGAGAGGACACGTC TTGGATCTCGTGGTTCTGTAATTTGAGAGGAAATGAGTTCTTTTGCGAGGTTGACGATGATTACATCCAAGACGATTTCA ACCTTTGTGGGTTGAGCAGTCAAGTGCCTTACTATGATTATGCACTCGATTTAATTTTGGATGTCGAATCCTCCCATGGT AAGCTTATGTTTATTATATGTTTTGCCGATACTAGTGCGGTGATTCTGTTTTGATTCAAATTCAAATGTCTGCGGTGCTG ATGAACACCTATGACCTATCCGATCATTTTGTACTTAGGTGACATGTTTACGGAGGAACAAAATGAGTTAATTGAATCAG CAGCGGAGATGCTGTATGGTCTGATTCATGCCCGGTACATTTTGACAAGCAAAGGAATGGCTGCCATGGTATGATTTTTA TGTCTCTGGTTACTGTCATTTTATCACTTCACTGTTGATAAGGTTGTACTGTACTATTACTGATGTTGGAATTTTTGCAG CTGGACAAATACAAGAACTATGATTTTGGAAGATGCCCAAGAGTTTACTGCTCTGGACAACCTTGTCTTCCAGTTGGCCA GTCAGACATTCCAAGGTCTAGTACTGTGAAAATTTATTGCCCTAGGTGTGAAGACATTTACTATCCTCGGTCCAAATATC AAGGCAGTATCCTTATACATGTTATAAAATGATGTGTTGGTTTAAGTTGAGTATGCATCGACATGCGTGGCAAATTTTTA TTTTTGATTCTCCTGCACATCTCACCTCTTCCTTGGTTTTGACTTATAAGTAGTTTGTAGAGAGGCATTTCTTTCTAAAT TTTGATTTTTTGGCAATTCACCCCCATGTGGATATCATCTGTTGTTTACTATTTGCAATGTGGACCGAAGGTATTAAATG TCTAAAAGAATTAGGCTGATAATTCCTGTCACCAATATACACTATGCTGGTCTATAATGGGATGAGAGTAATAATCAAAT GATGAATGACTTAATTTTGGGATTTGATATTCATTATCTGATCTCTTGACAAGTTATATCTGACATAGGGAAAGTGTTTT ATGACTGCCTGAAATTGGTATTTTATTTTCTTGTTAATTATATTCTGCAAATTTAGTTTCAGCTGTCTTCTCCTTGTATA TCTCAAGCTTGGGAGCAGTTTGGGATCCTTTGGGCCCATTCAAATTTAGGAACATGTATTTATTACCAAATTTATGGTAA TTCTAAAAACTACAAGCTTTTCAAAAAAAAAAACTACAAGGAAAAAACTGCAGAAAAAAGAACACTTTAAATGCTGGCAA ACATTAAGGTGTTTTTTTTCTTGCTTCCACTCTATTACTCATTTTTTACATCCTGATATGTGTGTATTTTGGGATGATTG ATTGCATTTGCATGTCCCTATAGTTTTGCAATATAATTGTGGCTTAAATTTATGGTATCATATATGCTTCCCAAATTTTC CTTGAGTCTGTTCTAGACATTGATGGAGCTTATTTTGGTACTACATTTCCTCACCTGTTCCTGATGACTTATGGACAACT GAAGCCACAGAAACCATCACAGAGCTACGTTCCGAGAGTTTTTGGCTTTAAGCTTCACAAGCCATGA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0418400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTGTGAATGTGTAATGTACCCCAAGTTTTGTTTGGTTGCTTGCATGAATAAGGAATCTGAAACAGACAGTGAAGAGTC TGATGTTAGCGGTTCTGACGGAGAGGACACGTCTTGGATCTCGTGGTTCTGTAATTTGAGAGGAAATGAGTTCTTTTGCG AGGTTGACGATGATTACATCCAAGACGATTTCAACCTTTGTGGGTTGAGCAGTCAAGTGCCTTACTATGATTATGCACTC GATTTAATTTTGGATGTCGAATCCTCCCATGGTGACATGTTTACGGAGGAACAAAATGAGTTAATTGAATCAGCAGCGGA GATGCTGTATGGTCTGATTCATGCCCGGTACATTTTGACAAGCAAAGGAATGGCTGCCATGCTGGACAAATACAAGAACT ATGATTTTGGAAGATGCCCAAGAGTTTACTGCTCTGGACAACCTTGTCTTCCAGTTGGCCAGTCAGACATTCCAAGGTCT AGTACTGTGAAAATTTATTGCCCTAGGTGTGAAGACATTTACTATCCTCGGTCCAAATATCAAGGCAACATTGATGGAGC TTATTTTGGTACTACATTTCCTCACCTGTTCCTGATGACTTATGGACAACTGAAGCCACAGAAACCATCACAGAGCTACG TTCCGAGAGTTTTTGGCTTTAAGCTTCACAAGCCATGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0418400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MCECVMYPKFCLVACMNKESETDSEESDVSGSDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYAL DLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRS STVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQSYVPRVFGFKLHKP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11740:SF18
15 224 210 2.6E-149 –
PANTHER
PTHR11740
15 224 210 2.6E-149
IPR000704
Gene3D
G3DSA:1.10.1820.10
31 135 105 3.3E-44
IPR016149
SUPERFAMILY
SSF57798
36 224 189 3.27E-83
IPR035991
SMART
SM01085
38 221 184 2.0E-130
IPR000704
PRINTS
PR00472
38 54 17 8.5E-67
IPR000704
Pfam
PF01214
38 221 184 2.7E-82
IPR000704
PRINTS
PR00472
55 69 15 8.5E-67
IPR000704
PRINTS
PR00472
110 131 22 8.5E-67
IPR000704
PRINTS
PR00472
135 156 22 8.5E-67
IPR000704
Gene3D
G3DSA:2.20.25.20
136 210 75 3.5E-36 –
ProSitePatterns
PS01101
139 170 32 -
IPR000704
PRINTS
PR00472
157 178 22 8.5E-67
IPR000704
PRINTS
PR00472
185 202 18 8.5E-67
IPR000704

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005956
Cellular component Protein kinase CK2 complex A protein complex that possesses protein serine/threonine kinase activity, and contains two catalytic alpha subunits and two regulatory beta subunits. Protein kinase CK2 complexes are found in nearly every subcellular compartment, and can phosphorylate many protein substrates in addition to casein.
Subterm of
GO:0019887
Molecular function Protein kinase regulator activity Modulates the activity of a protein kinase, an enzyme which phosphorylates a protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0418400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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