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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0419000 |
| Transcript ID | LotjaGi2g1v0419000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glutamate dehydrogenase; TAIR: AT5G07440.3 glutamate dehydrogenase 2; Swiss-Prot: sp|Q38946|DHE2_ARATH Glutamate dehydrogenase 2; TrEMBL-Plants: tr|I1J9Q7|I1J9Q7_SOYBN Glutamate dehydrogenase; Found in the gene: LotjaGi2g1v0419000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91733623..91735871) extracted from Lotus japonicus Gifu genome v1.2.
ATGAACGCTCTCGCAGCCACCAACCGCAACTTCAAACGCGCCGCTCGCATTCTCGGTTTGGACGCCAAGCTTGAGAATAG CCTTATGATCCCCTTCAGGGAAATCAAGGTTTTCTTTGTTTTTCATTTCTCTGTTTTGTTTCTTCTAAAATCATAATAAT AACCAATGAATGATATCATTGGATTTTGCAGGTTGAATGCACGATCCCAAAAGATGATGGAACTCTGGTTTCCTATGTTG GTTTCAGGATCCAACATGACAATGCTCGTGGTCCTATGAAAGGCGGAATCCGTTATCACCCTGAGGTTCTTTGTTTTTCT GCATGTTTTGTTTTCTCTACGTTGAATGGTTCATGTTTTGCTGTGTGTGTATACTCATTTTGGTTTATGATTCGAATGAT TTAACCTTTGCATGCCAAGTTCTGTAAAAGTTTCAATGGTTATATAGAATCCTAATTCATTGTTAAAAATGAAGTAAGAA AATGGTAAGGTACAATTCCTTGAAAAGATAAAAGACAAAAGCAGGTTTCAAAATACCCCTGCCTGATTTTTCTCAACTTC TGAATCGAAAAAATAGGACATGCATTTTTCATGTTAGTAATCTGTTACCTATAGAATAAGTCAACAATTTTTAGCTGAAT CAAATTTTCTGGGAGAAAGGAAAGAGTGCAGAGCATGAGCTGAACTTGACAATGATTTTCTCATTGGAGCAGATTTTTAT TTTTGCAAAATTAACTGAGTCACTGTGTAACTTCAACTGCATCATGCATGCTTCATCTTTAATGTTAGTCTACATAGTTC TCCTGATGACAATTAAAATGTTGCATGATGACCCTTTAAACATTCTCTCTCACACTCTTTGTAACATTATTTTTTATCAA TTGGAAATTTCCATCACCACTTTCTTATTAGTTAAATTAATGTGAGGCACCAGCTCTACTAAATCATATTGGTCCCCTCC AAATTTGATGGTCTTATTGTCTATTAGTAGCATACCAGCATTTCTCAATGTGAACAACAAAATTTTCAAACTCGTTTTTG AGTATCATTGTATGACATTGTCCTATTCATTTGCTGATGCCAGGTTGACCCAGATGAAGTGAATGCTCTAGCTCAGTTAA TGACATGGAAGACAGCCGTAGCTGACATTCCGTATGGAGGAGCAAAGGGTGGAATTGGTTGCAACCCGAAGGACCTGAGC CTTAGCGAGCTAGAACGTCTCACTCGTGTTTTCACCCAAAAGATCCATGATCTCATTGGAGTTCAGAGGGATGTTCCTGC CCCTGACATGGGAACTAATGCACAGGTACTTCTTTTCTTAAGTACATGACTTGTTTTGTGCCCATTTATTATACAAATTA GCATCTAGCAGTTTCATCATGTATCCTTTGTTTCACAGACAATGGCTTGGATCCTTGATGAGTATTCAAAGTTTCATGGG CATTCACCAGCAGTTGTGACTGGAAAGCCTATTGTAAGCATAACCATCATATTCTTGTATGCACAATCATAATTTATGTA CTCAAGACTAAGAAACTAGTTTGAAAATGTTTTGGTCTGTAGGATCTTGGAGGTTCATTGGGAAGAGAAGCTGCCACAGG ACTTGGAGTGATTTTTGCAACAGAGGCTTTATTTGCTGAATATGGGAAGTCAATTTCTGACATGACATTCGCCATCCAGG TAAATCTCTAATCAGATTAGGAAATATTTTAGTTGGCCCTAAATATTTAGTACGTGTTTGGATACCAGTTGAGTGCAAAG TGAACGGACTTTCATCTCAATCCATAAGCGTTCAGAAGAGTTTGCGAGTGCTAACGTCGTTTGACTGGTCCCAATAGATA TCCAATTAACAAAATCTTCATTAGGAAAATATATGTCAATATGTCTGTAGTTTCTGAAATAATAGATATTAATCCTAGTT TCATCTATATTATATGATTATTTGTTTCACTGTTCAGGGGTTTGGAAACGTGGGTTCTTGGGCTGCTAGGTCAATTTTTG AGAGAGGGGGTAAGGTGGTCGCTGTGAGTGACATCAGTGGTGCTATCAAAAACCCAAATGGAATTGATATCAAAGCTCTT CTGAAACACAAGGAAGGCAATGGAACTTTGAAGGACTTCCCAGGAGGAGATGCCATGGATCCAAATGAGTTACTTGTTCA TGAATGTGATGTTCTCATCCCATGTGCCTTGGGAGGTGTTCTCAACAAGTATGTTCATCTAAGCTCATAAATTATCAGCA CTGAAGTGA
CDS sequence (LotjaGi2g1v0419000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACGCTCTCGCAGCCACCAACCGCAACTTCAAACGCGCCGCTCGCATTCTCGGTTTGGACGCCAAGCTTGAGAATAG CCTTATGATCCCCTTCAGGGAAATCAAGGTTGAATGCACGATCCCAAAAGATGATGGAACTCTGGTTTCCTATGTTGGTT TCAGGATCCAACATGACAATGCTCGTGGTCCTATGAAAGGCGGAATCCGTTATCACCCTGAGGTTGACCCAGATGAAGTG AATGCTCTAGCTCAGTTAATGACATGGAAGACAGCCGTAGCTGACATTCCGTATGGAGGAGCAAAGGGTGGAATTGGTTG CAACCCGAAGGACCTGAGCCTTAGCGAGCTAGAACGTCTCACTCGTGTTTTCACCCAAAAGATCCATGATCTCATTGGAG TTCAGAGGGATGTTCCTGCCCCTGACATGGGAACTAATGCACAGACAATGGCTTGGATCCTTGATGAGTATTCAAAGTTT CATGGGCATTCACCAGCAGTTGTGACTGGAAAGCCTATTGATCTTGGAGGTTCATTGGGAAGAGAAGCTGCCACAGGACT TGGAGTGATTTTTGCAACAGAGGCTTTATTTGCTGAATATGGGAAGTCAATTTCTGACATGACATTCGCCATCCAGGGGT TTGGAAACGTGGGTTCTTGGGCTGCTAGGTCAATTTTTGAGAGAGGGGGTAAGGTGGTCGCTGTGAGTGACATCAGTGGT GCTATCAAAAACCCAAATGGAATTGATATCAAAGCTCTTCTGAAACACAAGGAAGGCAATGGAACTTTGAAGGACTTCCC AGGAGGAGATGCCATGGATCCAAATGAGTTACTTGTTCATGAATGTGATGTTCTCATCCCATGTGCCTTGGGAGGTGTTC TCAACAAGTATGTTCATCTAAGCTCATAA
Protein sequence (LotjaGi2g1v0419000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNALAATNRNFKRAARILGLDAKLENSLMIPFREIKVECTIPKDDGTLVSYVGFRIQHDNARGPMKGGIRYHPEVDPDEV NALAQLMTWKTAVADIPYGGAKGGIGCNPKDLSLSELERLTRVFTQKIHDLIGVQRDVPAPDMGTNAQTMAWILDEYSKF HGHSPAVVTGKPIDLGGSLGREAATGLGVIFATEALFAEYGKSISDMTFAIQGFGNVGSWAARSIFERGGKVVAVSDISG AIKNPNGIDIKALLKHKEGNGTLKDFPGGDAMDPNELLVHECDVLIPCALGGVLNKYVHLSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 296 | 296 | 6.1E-181 | – | |
| PANTHER | 1 | 296 | 296 | 6.1E-181 | – | |
| SUPERFAMILY | 4 | 178 | 175 | 1.25E-59 | – | |
| Gene3D | 33 | 175 | 143 | 3.4E-59 | – | |
| Pfam | 33 | 159 | 127 | 1.0E-49 | ||
| PRINTS | 88 | 102 | 15 | 1.3E-28 | ||
| ProSitePatterns | 96 | 109 | 14 | - | ||
| PRINTS | 167 | 189 | 23 | 1.3E-28 | ||
| Pfam | 176 | 296 | 121 | 1.6E-31 | ||
| Gene3D | 176 | 298 | 123 | 7.4E-42 | – | |
| SUPERFAMILY | 176 | 296 | 121 | 1.88E-35 | ||
| SMART | 178 | 299 | 122 | 2.7E-7 | ||
| PRINTS | 209 | 229 | 21 | 1.3E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cellular amino acid metabolic process | The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi2g1v0419000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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