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IPR006096

Description

IPR006096 is a Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase, C-terminal.

<p>Glutamate, leucine, phenylalanine, valine and tryptophan dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.</p> <p>Glutamate dehydrogenases ([ec:1.4.1.2], [ec:1.4.1.3], and [ec:1.4.1.4]) (GluDH) are enzymes that catalyse the NAD-and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [[cite:PUB00001430], [cite:PUB00003424]]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [[cite:PUB00002418]] -this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha-keto acids [[cite:PUB00004656]]. In rice, glutamate dehydrogenase 3 is mitochondrial.</p> <p>Leucine dehydrogenase ([ec:1.4.1.9]) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues [[cite:PUB00000302]]. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle.</p> <p>Phenylalanine dehydrogenase ([ec:1.4.1.20]) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate [[cite:PUB00002347]].</p> <p>Valine dehydrogenase ([ec:1.4.1.8]) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate [[cite:PUB00002221]].</p> <p>L-tryptophan dehydrogenase catalyses the reversible oxidative deamination of L-tryptophan to indole-3-pyruvate in the presence of NAD+ [[cite:PUB00101896], [cite:PUB00101895]].</p> <p>This entry represents the C-terminal domain of these proteins.</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Cellular amino acid metabolic process The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Associated Lotus transcripts 28

Transcript Name Description Predicted domains Domain count
PREDICTED: NADP-specific glutamate dehydrogenase-like [Glycine max] gi|356526047|ref|XP_003531631.1| 15
PREDICTED: NADP-specific glutamate dehydrogenase-like [Glycine max] gi|356526047|ref|XP_003531631.1| 15
PREDICTED: glutamate dehydrogenase 1-like isoform X1 [Cicer arietinum] gi|502107100|ref|XP_004493157.1| 20
PREDICTED: glutamate dehydrogenase 2-like [Glycine max] gi|356497088|ref|XP_003517396.1| 20
PREDICTED: NADP-specific glutamate dehydrogenase-like [Glycine max] gi|356526047|ref|XP_003531631.1| 17
PREDICTED: glutamate dehydrogenase 2-like [Glycine max] gi|356497088|ref|XP_003517396.1| 20
Glutamate dehydrogenase; TAIR: AT5G18170.1 glutamate dehydrogenase 1; Swiss-Prot: sp|Q43314|DHE1_ARATH Glutamate dehydrogenase 1; TrEMBL-Plants: tr|C6TDZ0|C6TDZ0_SOYBN Glutamate dehydrogenase; Found in the gene: LotjaGi1g1v0642800 20
Glutamate dehydrogenase; TAIR: AT5G18170.1 glutamate dehydrogenase 1; Swiss-Prot: sp|Q43314|DHE1_ARATH Glutamate dehydrogenase 1; TrEMBL-Plants: tr|V7CUX4|V7CUX4_PHAVU Glutamate dehydrogenase; Found in the gene: LotjaGi1g1v0642800 20
Glutamate dehydrogenase; TAIR: AT5G18170.1 glutamate dehydrogenase 1; Swiss-Prot: sp|Q43314|DHE1_ARATH Glutamate dehydrogenase 1; TrEMBL-Plants: tr|V7CUX4|V7CUX4_PHAVU Glutamate dehydrogenase; Found in the gene: LotjaGi1g1v0642800 16
Glutamate dehydrogenase; TAIR: AT5G18170.1 glutamate dehydrogenase 1; Swiss-Prot: sp|Q43314|DHE1_ARATH Glutamate dehydrogenase 1; TrEMBL-Plants: tr|A0A142F3D2|A0A142F3D2_ARAHY Glutamate dehydrogenase; Found in the gene: LotjaGi1g1v0642800 20
Glutamate dehydrogenase; TAIR: AT5G18170.1 glutamate dehydrogenase 1; Swiss-Prot: sp|Q43314|DHE1_ARATH Glutamate dehydrogenase 1; TrEMBL-Plants: tr|A0A142F3D2|A0A142F3D2_ARAHY Glutamate dehydrogenase; Found in the gene: LotjaGi1g1v0642800 20
Glutamate dehydrogenase; TAIR: AT5G18170.1 glutamate dehydrogenase 1; Swiss-Prot: sp|Q43314|DHE1_ARATH Glutamate dehydrogenase 1; TrEMBL-Plants: tr|A0A142F3D2|A0A142F3D2_ARAHY Glutamate dehydrogenase; Found in the gene: LotjaGi1g1v0642800 20
Glutamate dehydrogenase; TAIR: AT5G18170.1 glutamate dehydrogenase 1; Swiss-Prot: sp|Q43314|DHE1_ARATH Glutamate dehydrogenase 1; TrEMBL-Plants: tr|C6TDZ0|C6TDZ0_SOYBN Glutamate dehydrogenase; Found in the gene: LotjaGi1g1v0642800 20
Glutamate dehydrogenase; TAIR: AT5G18170.1 glutamate dehydrogenase 1; Swiss-Prot: sp|Q43314|DHE1_ARATH Glutamate dehydrogenase 1; TrEMBL-Plants: tr|A0A151T9S6|A0A151T9S6_CAJCA Glutamate dehydrogenase; Found in the gene: LotjaGi1g1v0642800 20
Glutamate dehydrogenase; TAIR: AT5G18170.1 glutamate dehydrogenase 1; Swiss-Prot: sp|Q43314|DHE1_ARATH Glutamate dehydrogenase 1; TrEMBL-Plants: tr|A0A151T9S6|A0A151T9S6_CAJCA Glutamate dehydrogenase; Found in the gene: LotjaGi1g1v0642800 20
Glutamate dehydrogenase; TAIR: AT5G18170.1 glutamate dehydrogenase 1; Swiss-Prot: sp|Q43314|DHE1_ARATH Glutamate dehydrogenase 1; TrEMBL-Plants: tr|V7CUX4|V7CUX4_PHAVU Glutamate dehydrogenase; Found in the gene: LotjaGi1g1v0642800 20
Glutamate dehydrogenase; TAIR: AT5G18170.1 glutamate dehydrogenase 1; Swiss-Prot: sp|Q43314|DHE1_ARATH Glutamate dehydrogenase 1; TrEMBL-Plants: tr|V7CUX4|V7CUX4_PHAVU Glutamate dehydrogenase; Found in the gene: LotjaGi1g1v0642800 20
Glutamate dehydrogenase; TAIR: AT5G07440.1 glutamate dehydrogenase 2; Swiss-Prot: sp|Q38946|DHE2_ARATH Glutamate dehydrogenase 2; TrEMBL-Plants: tr|I1J9Q7|I1J9Q7_SOYBN Glutamate dehydrogenase; Found in the gene: LotjaGi2g1v0419000 20
Glutamate dehydrogenase; TAIR: AT5G07440.3 glutamate dehydrogenase 2; Swiss-Prot: sp|Q38946|DHE2_ARATH Glutamate dehydrogenase 2; TrEMBL-Plants: tr|I1J9Q7|I1J9Q7_SOYBN Glutamate dehydrogenase; Found in the gene: LotjaGi2g1v0419000 16
Glutamate dehydrogenase, putative; TAIR: AT1G51720.1 Amino acid dehydrogenase family protein; Swiss-Prot: sp|P28724|DHE4_GIAIN NADP-specific glutamate dehydrogenase; TrEMBL-Plants: tr|I1KUX4|I1KUX4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0023400 14
Glutamate dehydrogenase, putative; TAIR: AT1G51720.1 Amino acid dehydrogenase family protein; Swiss-Prot: sp|P28724|DHE4_GIAIN NADP-specific glutamate dehydrogenase; TrEMBL-Plants: tr|I1KUX4|I1KUX4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0023400 14
Glutamate dehydrogenase, putative; TAIR: AT1G51720.1 Amino acid dehydrogenase family protein; Swiss-Prot: sp|P28724|DHE4_GIAIN NADP-specific glutamate dehydrogenase; TrEMBL-Plants: tr|I1KUX5|I1KUX5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0023400 14
Glutamate dehydrogenase, putative; TAIR: AT1G51720.1 Amino acid dehydrogenase family protein; Swiss-Prot: sp|P28724|DHE4_GIAIN NADP-specific glutamate dehydrogenase; TrEMBL-Plants: tr|I1KUX4|I1KUX4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0023400 14
Glutamate dehydrogenase, putative; TAIR: AT1G51720.1 Amino acid dehydrogenase family protein; Swiss-Prot: sp|P28724|DHE4_GIAIN NADP-specific glutamate dehydrogenase; TrEMBL-Plants: tr|I1KUX4|I1KUX4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0427900 14
Glutamate dehydrogenase, putative; TAIR: AT1G51720.1 Amino acid dehydrogenase family protein; Swiss-Prot: sp|P28724|DHE4_GIAIN NADP-specific glutamate dehydrogenase; TrEMBL-Plants: tr|I1KUX5|I1KUX5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0427900 14
Glutamate dehydrogenase, putative; TAIR: AT1G51720.1 Amino acid dehydrogenase family protein; Swiss-Prot: sp|P28724|DHE4_GIAIN NADP-specific glutamate dehydrogenase; TrEMBL-Plants: tr|I1KUX5|I1KUX5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0427900 14
Glutamate dehydrogenase, putative; TAIR: AT1G51720.1 Amino acid dehydrogenase family protein; Swiss-Prot: sp|P28724|DHE4_GIAIN NADP-specific glutamate dehydrogenase; TrEMBL-Plants: tr|I1KUX4|I1KUX4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0427900 14
Glutamate dehydrogenase; TAIR: AT5G07440.1 glutamate dehydrogenase 2; Swiss-Prot: sp|Q38946|DHE2_ARATH Glutamate dehydrogenase 2; TrEMBL-Plants: tr|I1J9Q7|I1J9Q7_SOYBN Glutamate dehydrogenase; Found in the gene: LotjaGi4g1v0195400 20

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd01076 CDD 1 3.57