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LotjaGi2g1v0419600.1

Overview

Field Value
Gene ID LotjaGi2g1v0419600
Transcript ID LotjaGi2g1v0419600.1
Lotus japonicus genome version Gifu v1.2
Description GATA transcription factor-like protein; TAIR: AT4G17570.3 GATA transcription factor 26; Swiss-Prot: sp|Q8W4H1|GAT26_ARATH GATA transcription factor 26; TrEMBL-Plants: tr|I1LGU6|I1LGU6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0419600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:91768205..91774519) extracted from Lotus japonicus Gifu genome v1.2.

CACAATACAAGAGAGGTCACATACACAGACCTTTCTCCTTCTTCTTCTTCTTCTCTCTCTCTCTCTTTCTCTCTCTCACC CATTCAACTTTCTTTTCCTCTTTTCACATTATTTCTGAGATTCCTTCAATGTTCTTCTCTCTTCCTTTGGATTCTACAGA TTCCCAGCTAAAACACACATCAATATCTTCAATTCTAGTTCCTCTGTGTCTGTTTTTGTGATTTTTTTGTTAAAGGACCT TCTATTGTTTTTCTGCAAACTATCATTCTGGGTTTTTCTGAGGAATAAAAAGTACTTCAAATCTTCAATATAACTAATAT ATTTTCAGAGAACTTTCATTTTTTTTATTAGCTATTTGTGAAAAAAAGGTACTTTTTTCTCTCATTTTCTGGATTTTTTC TTCATAATTTTTTGGAAAAGATTGAGACATGGGCAAACAAGGGCCTTGCTATCACTGTGGAGTTACAAGTGAGTTCTTGT TTCTCCAATATACAATATTTTTTTTGATACAGCTTGACCTTTTTTTATTTTTATATGGAGTACTCAACAACTATTTGCAA ATTGAGATGTGTTGAAGGAAGAGTTGGTGCCCAGTATAAACTAAGAAAAATTATGCCTGGTCTGCTTAATATTCTGGAAA TATACAAATTCAAAAGTATAAGTAATCTTGTTGCATAGAGCATTTGGAACTGAAAACTATGGAAAATTATGATGATTTCT CACTTGTATGATTTTTTTTGCTTCACTCCTTTGTTGGTTTTATTTTCTGGACTATGTTTGAAATCTGAGCCAATGTAACT GGTGCAAATTAAGTTCAGAGTTCATTGAATTTGGGATTTGTTGCATTGATAGGAAGAACACCTTCTGCAGTTAAGGTGTT TACCAAAAAGAGTCAACCCATAGTTCATGTCTTTCCATTTTGATGGAAAGTAGATCAGGGAATTATGCATTTGCACAATG CTGATAGCTAATCCATTCCCATCTTTTGAAAGGATTTTGCAAACTTGTCTTAATTTCCTCTATTAATCAATTCCTCATTG TATCCAATAATCTTGGAGAGGCACTGTATTCATCTCTTAGACATGTTTTTCTCCCTTGCTTTCTGGCTGATGAAAATTTC TTCTCGTGTCTCTTAATGTTTATATTTTCAATCTTTCTCAATTTGTAACCATTGTTTTTGTTCACAATGCTGATCATCTT AATAGAACTAACACTGCAACTTGAGCCTTGAAAATTTTCATTGCTCTCTGAAAATTTAGAAGCAGTTTCCAAAGTGTTCA AGTCATTGCTACTGATGTGCTCTTCAATACTCTAACGCCATCTTTATATAGATAAATGATTGCATTCTCAAAAAGAAGAG AATGTTTCATTTGGACTGCCTTAACTTTGAGGCCTCGAGTGAGACTCAGTGGCTGCTGTTAATCATTTCAGTTCAAATGC AATCATTGTTTTCACTATGAGTCTACAATTGCTCGTAATTTGAGTCTTATACTGGCTGTTTGAGGTTTCTTTGCAGTATC TTGTTTTCCTTGCATAGCAGTATTGATATCTATTAATCTTAGTCATTTACACTAGCTGGATGACAACAATAAAAGACAAA ACATTTCTAGCATGAATAGCTAGTTCCTTATACTAGTGAATACTAGCAGATTATGCTATCTCAACCAGGAAGTTGTTGAG TTCAGCTTTCTACTGCATGAAATACAACCTGCAACTATAAATTTAAGCCCAGAGGTTTTGAGCAATGTGCTTCCCAGTAC CAAGCTTAATATATTTTTTTTTTGTATGCACCATGAATTGGAGTATCAGAAAATTATGAACACGTTGTTATTAGTCGATC CAATCTGAGATACATCTCTTTTCTTGCTTGTGAGGATGCTAAATGTTTGAAGGTTTCTGACAATTGAGCACTGCAACAGG CACACCACTTTGGCGTAATGGACCACCGGAGAAGCCAATACTATGCAATGCATGTGGGTCGCGGTGGAGGACAAAGGGAA CTCTTGTAAATTATACCCCTTTACATGCTCGGCCAGAAACTGATGATTATGAGGATCAAAAGGTTTTCAGAGTAAAAAGC ATATCCTTAAATAAGAACAAAGAGGGGAAACCACTCAAAAGAAAGCAGAACCATGACAATTTAGTATCTGGAGGGGTTGC ACCTTATTACAACCAGGGATTCCCAAAGGTTGTCGATGAAGATACAAGCAATCGATCAAGTTCAGGATCAGCTATCTCTA ACTCGGAGAGCTGTGCACAATTTGGTGGCACTGAGGCTAGTGATCTGACAGGTTGGATGATTACTTAGCAGATTTTATTT GGAAGATATTTCTGCATAACTGATTTGGGTAACATTGGCCATTACTTTGAAATAACACTGATTTTATCATCAGTCAAAAT TTATGTTGTAGTACAATCAAGAAGTGCATTATGAAATAACGGAGAATGAAAAAAAGAAATAAATTGTGGAATAGCAGCAC AGTTTCACAGTCATTGCTTTTCCTAAAAGGTGCCAAGTGAATTTTTGCTTCTAATTGTACATGGGTGTGCTTTACATTGA CAAAAGGATTTGAAGAGTGAATATTTTTCTATCTTTAAGTTCTAGTTGTCTCTTAACGTTTGTAGTAGCATGTTCTTTTT TTTCATAGTATATATATAATGTATATATATGTATATATGTTATTAAGATAATACATTTTTTTTCTAAAAAAATTGAATGT CATGTCTTCCACTTATGCTTAATCTCTCTAGTTCGTCATTCATTGACCAAGATCAAGAACTTCAACTCTTGTGTTATTAT GCAAAATATGTACACTCCTGCTTATCAAAACAGATAACCCTTTTCCTTCAATAACAACATGTAATTTAATTTGGATAGTT TGATTAATTTAGGTCCTGCTCAATCAGTGGTCTGGGAGACCATGGTGCCTTCAAAAAAGAGGACATGTGTGGGTCGTCCA AAGCCTTCTTCTGTTGAGAAGCTCACACAAGATTTATGCACTATTCTTCATGAACAACAGTCTTATTTTTCTGCATCTTC TGAAGAAGATCTTCTTTTTGAAAGTGAAACACCTATGGTCTCTGTTGAGATAGGACATGGAAGCATGCTCTTTAGGCATC CTAGCTGTATAGCTCGTGACGAAGAGTCTGAAGCGAGCTCTCTTTCAGTTGATAATAAACAGTGCCCAATAAGTGAGGCA TATTCATATTCTGGCGCCATGCTTGTTCATAATAGTTCCAGTCCCATGAACTTCTCATCTCAAGGTGTTGAAAAGGTCAG GAACTCTGCTGACCATGGAATGCACCAGGAGCAACTTAAAAGGCACGCTTTCTTACGCTAGAATAAACTTTTTTGTTATC CAAGAAGTTATTAGTTAACATGGTATAAAAAAATTCATTTTGTTTGTTTCTTCCAAAAGAAAAAGTATATATATATATAT TCCTGTATGTAATCTAAGTTAGGGATTTTCTTTGCAAGTGAGTTGGTGAAAAAATATTTCAGATAAATGTGGTCACACTG TTTTGGAGAAGAGACAAACATACTCTATAGTAATTAATATATCTGTTTTTCAACTTTCAGTGACAAGTCACAGCTTGAAA GGGTGCAAATGCTTGGAAATCATGATTCACCACTGTGCTTAATAGATTTAAATGTGAGTAGCATTCCCCTTTCCCTTTCT TGATTGCTTGTTTTAGCTTAAGTTGATAACGTTATTGTATTCTGGCTTGTAATAACTAATAACTAAGTGGGAATAGTTTT TGTCAATCACGGGCTTCATTGATTTGATACACAATTTGCATGATCATTTTTTTAATCTTCTATTAGACCTTTACTTCCTG TTACTATCAGAGCTTTCAAGGTAGCAATTTGATTCAGAGGCTTAGAGAATAGGCACTATTTTCATAATAATTTACTTGTT TCTAGTGTGGTACTCTTGATCTGTATTAAATATTGATATTTGTAGTAATATGCTAGCAGGTAATGCCTGATTGCTTAATG TAATTTTTATTATGCTTGGTTAGGATGTAGTAAACTATGAAGAGTTCTTGAGAATCTTAACAAATGAAGAGCAGCAGCAA TTACTGAAGTTTCTTCCTGTGGTTGATACTGCTAAACTTCCAGATAGGTTGGAATTCTACTCTTTTGTGGTTCATCATGT TTTTATTGTAATTGGCCAAGAAATACTGTTTCAAATTCCAATGTTGTTCGAGATTTATAATTCTCATGAAGACTGAAGTA ACTTAAATGTGTTTGTGTGGGGAGTGGGGATATATAGCACTATAATTATAATTGAGGAGTGCAAAGAGAATTAAAGTCAA TTCATTTGATACATCATTGCTTCATTTTTTCAGTAATAATTTGATAAAATATCCAACTTCCATTTTACATGGCATTGCTT GAATATTTTAGTTTTCTTCATAAAAAATTAAAGTGAGGGTGCAACATATATGTGATGTGACTTTTAAGGGAATATAAGAT GTTGAGACCAAGTCCATCCCCATTCATTAATGACTTGTATTGTTGTATATGCAGCCTTAAAGCCATGTTCGATAGCTCTC AATTCAAAGAGAACTTAACTTATTTTCAGCAGCTTCTCTCAGAAGGTGTCTTTGATATCTCTTTGTCAGGAGCAAAACCT GAAGATTGCAAGACTCTGAAAAGATTTGCATTGTCCAATCTGTCAAAATTGAAATGGGTAGAACACTACCATTTTCTTAA GGTTTGTGCTAGTTTATTATTTCCCTATTAGAGATTATATTGATAAATAAACGCATTTACGTTGGTACTGATCAAATATC ACATCCTTCTATGGACGCAGAGATGTAAAAGGAGACCTGGAAAATCTGGTACTCCAGGATCTACTAGTACGTCATCAACT AATGTTGCGAACATCAAGAGAGTGCGTGATAGCTGGAATCAAAACTTTCCAGGTTAGCTTAAAATTAACCTCAAAGAAGA CGAAATAACAGATCATATACTAAGACCTTGCATTCCAATTATTATCTTTATAATGCCACGATACAATGATGTGTTTGTTG GCTATGCCTTCTAATAGACCTGAGGTTTAAATTGAGGGAATTGGAGGCAGTGAAGTTTGATACTCTCCATTGAAAATTCA GTTTTTCACGGAACTGAACCCTTCCCTCTTTCTGGGTTAAAATGCTTTGATTCATAATTTTATTTGCCGGCAGAGTGAAA ACTGAAAAATGTTAGTTGTAGTATAGTATTTAATCAGTGCTATTGAAAACAGACCTTTTTTTTATTTGTTTGTGGGGCTC ATGGCACTCAAAATACTGAGTAAAAAAAATCAATAAATGTTGTGCATTTACTGAGAGATGTCAAGAAAGTTGTGTAACTA GTTAGAACTGAATTTTTCGTTATTAGTTCTGTTTATGAGTTAACTGATGAAAAGCAAATTTCAGAGTTGAAGCCGATAAT GAGAAACCCCAAAAGGGTGATCACAAAAGCTGGTTGTGAGGGCAAAGAAGTTGTAGAAGATGGCGCTAGCAATAGTCCAA AAAGCCTGTTTCCTTTGCCTCGTGCTGCTAGCTCGCTCTTCCTGGATTCTTTAAACTTTGCTGAAGAGAGTTCTGATCAG GATCTACTGCTAGATGTGCCATCTAACAGTTCTTTTCCACAGGCAGAGCTTCTATGCCCAACTTTAAGCTTTGGCGCTCA AGCCAGCACTAGTAGTAGCTCAGCATACTCACATCTTGTCCACCGTTAAGTGAGTGTTTGAATTTCCGTGGAACTCGACG CTACAAAACTTCTGCATTTGTGCGTTTGAATTTGTAAAATCACATTTGTGTTAGTGCAGACGGAGACACAAACACGCACT TAGTAATCTTTGCCGGGTTACTTCAGTGGCATTGAGCAGTACTGTCATATATTTTACATCTTAAAGGATATGATGGTTGT GCTTACAACCTACTTAAACTTGGATTGGATTGGATTGTCAACTATGGAAGTTGGCTGGGCTTTTTGTACAGGTTGTCACA GATTGTAACATATTGCATGAAATGAGGAGTGGTAATCTCTAGAGTTTTGTATGCAACCACAGTTTTTATGTAGGTTGAAT AATTTAGACACATTTTCCCCCAACTTAAGTATAAAACAAATAAAATGGGAAGACAAAGCTCTGTCAAAACAATTCCATCT CACACTTAATCTCTAGTAGCCCCACAAAAGAAAAGAAAAAACATAATTTCACCATTTTTTCTTAGTTGAGATTTTTTAAT TACCTTCAACATGGGATTCAGGGTTATCTTTTACAAGTGCTATCTGTTAACAACAAACCAAAGGAATTTTCTCAT
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0419600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGCAAACAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGTAATGGACCACCGGAGAAGCCAAT ACTATGCAATGCATGTGGGTCGCGGTGGAGGACAAAGGGAACTCTTGTAAATTATACCCCTTTACATGCTCGGCCAGAAA CTGATGATTATGAGGATCAAAAGGTTTTCAGAGTAAAAAGCATATCCTTAAATAAGAACAAAGAGGGGAAACCACTCAAA AGAAAGCAGAACCATGACAATTTAGTATCTGGAGGGGTTGCACCTTATTACAACCAGGGATTCCCAAAGGTTGTCGATGA AGATACAAGCAATCGATCAAGTTCAGGATCAGCTATCTCTAACTCGGAGAGCTGTGCACAATTTGGTGGCACTGAGGCTA GTGATCTGACAGGTCCTGCTCAATCAGTGGTCTGGGAGACCATGGTGCCTTCAAAAAAGAGGACATGTGTGGGTCGTCCA AAGCCTTCTTCTGTTGAGAAGCTCACACAAGATTTATGCACTATTCTTCATGAACAACAGTCTTATTTTTCTGCATCTTC TGAAGAAGATCTTCTTTTTGAAAGTGAAACACCTATGGTCTCTGTTGAGATAGGACATGGAAGCATGCTCTTTAGGCATC CTAGCTGTATAGCTCGTGACGAAGAGTCTGAAGCGAGCTCTCTTTCAGTTGATAATAAACAGTGCCCAATAAGTGAGGCA TATTCATATTCTGGCGCCATGCTTGTTCATAATAGTTCCAGTCCCATGAACTTCTCATCTCAAGGTGTTGAAAAGGTCAG GAACTCTGCTGACCATGGAATGCACCAGGAGCAACTTAAAAGTGACAAGTCACAGCTTGAAAGGGTGCAAATGCTTGGAA ATCATGATTCACCACTGTGCTTAATAGATTTAAATGATGTAGTAAACTATGAAGAGTTCTTGAGAATCTTAACAAATGAA GAGCAGCAGCAATTACTGAAGTTTCTTCCTGTGGTTGATACTGCTAAACTTCCAGATAGCCTTAAAGCCATGTTCGATAG CTCTCAATTCAAAGAGAACTTAACTTATTTTCAGCAGCTTCTCTCAGAAGGTGTCTTTGATATCTCTTTGTCAGGAGCAA AACCTGAAGATTGCAAGACTCTGAAAAGATTTGCATTGTCCAATCTGTCAAAATTGAAATGGGTAGAACACTACCATTTT CTTAAGAGATGTAAAAGGAGACCTGGAAAATCTGGTACTCCAGGATCTACTAGTACGTCATCAACTAATGTTGCGAACAT CAAGAGAGTGCGTGATAGCTGGAATCAAAACTTTCCAGAGTTGAAGCCGATAATGAGAAACCCCAAAAGGGTGATCACAA AAGCTGGTTGTGAGGGCAAAGAAGTTGTAGAAGATGGCGCTAGCAATAGTCCAAAAAGCCTGTTTCCTTTGCCTCGTGCT GCTAGCTCGCTCTTCCTGGATTCTTTAAACTTTGCTGAAGAGAGTTCTGATCAGGATCTACTGCTAGATGTGCCATCTAA CAGTTCTTTTCCACAGGCAGAGCTTCTATGCCCAACTTTAAGCTTTGGCGCTCAAGCCAGCACTAGTAGTAGCTCAGCAT ACTCACATCTTGTCCACCGTTAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0419600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGKQGPCYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGTLVNYTPLHARPETDDYEDQKVFRVKSISLNKNKEGKPLK RKQNHDNLVSGGVAPYYNQGFPKVVDEDTSNRSSSGSAISNSESCAQFGGTEASDLTGPAQSVVWETMVPSKKRTCVGRP KPSSVEKLTQDLCTILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSMLFRHPSCIARDEESEASSLSVDNKQCPISEA YSYSGAMLVHNSSSPMNFSSQGVEKVRNSADHGMHQEQLKSDKSQLERVQMLGNHDSPLCLIDLNDVVNYEEFLRILTNE EQQQLLKFLPVVDTAKLPDSLKAMFDSSQFKENLTYFQQLLSEGVFDISLSGAKPEDCKTLKRFALSNLSKLKWVEHYHF LKRCKRRPGKSGTPGSTSTSSTNVANIKRVRDSWNQNFPELKPIMRNPKRVITKAGCEGKEVVEDGASNSPKSLFPLPRA ASSLFLDSLNFAEESSDQDLLLDVPSNSSFPQAELLCPTLSFGAQASTSSSSAYSHLVHR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46855:SF7
1 539 539 0.0 –
SMART
SM00401
1 53 53 8.5E-10
IPR000679
PANTHER
PTHR46855
1 539 539 0.0 –
Gene3D
G3DSA:3.30.50.10
2 60 59 8.3E-11
IPR013088
SUPERFAMILY
SSF57716
5 46 42 1.19E-11 –
CDD
cd00202
6 53 48 5.55841E-17
IPR000679
ProSitePatterns
PS00344
7 32 26 -
IPR000679
ProSiteProfiles
PS50114
7 40 34 11.2
IPR000679
Pfam
PF00320
7 41 35 9.1E-14
IPR000679
Pfam
PF13919
283 367 85 7.2E-10
IPR028020
Gene3D
G3DSA:3.40.190.140
289 372 84 3.1E-5
IPR038108
MobiDBLite
mobidb-lite
406 425 20 - –
MobiDBLite
mobidb-lite
411 425 15 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0419600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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