Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi2g1v0421800.1

Overview

Field Value
Gene ID LotjaGi2g1v0421800
Transcript ID LotjaGi2g1v0421800.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description auxin canalization protein (DUF828); TAIR: AT4G17350.1 auxin canalization protein (DUF828); Swiss-Prot: sp|Q8W4K5|VAB_ARATH VAN3-binding protein; TrEMBL-Plants: tr|V7CJ12|V7CJ12_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0421800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:91979935..91984823) extracted from Lotus japonicus Gifu genome v1.2.

CTAGTATCATTAGTATAATCAATTTTCGTGTTTTACAACGAGCGATTGTGGTTCCTTGCATTTGTTTGATTTTGCAACTA TGTCGTATTTTCATCAAAAACTAAATGTAAAAGACCACAATCGTTTGTTTAAAACACGAGAACGAGATGTAAGATGACAA AATTCAACACAATAAACAAATTCATCAATATCTAATTAGGAGATGTATAATACAGAATTTAAAGGGGATAAATTTTATTT TTCTCTTGGGCGCGACGACCCCATTTCAGAACTCAATTTCATCATAATTATGATACTAGACGAACTAAAAGTGCTATTAA AATCTAACTTGAGGATAGCTCATATGTGTGATAGAACTGATTCTCATGGATGCAAACTTGCTAAAACTCATGTTGTAAAA TGAAAGACACATCACACATCTATTTTTTGTTGTACCATTAGTTCTCAATCTACTATCACTCATACTTTTCATCGATAACA GTGCTCTGCATGAACCACTACCCGCTTCTCCAGGACTATGTTTTCTTTAATATACAGCACACACTGTTTTTTAAGCTTAG TTAATATAGGACGGTCTTGGACTGTTTAGATAACTTCCACCTGAAATTGTGGTGGTTCATAGCACAAAATTTTGATCACT CTTCCCTTCAATCTCTTCTGTCTCTCTGCCTCCAAATTCTGTCTCCTATAAATATTTTGACACTGAAGCTGATAATCGTA AAGCAGGTGAAGCTTCTATTGATCACTCTGTATAGCAGGTTTCATTTCATTCTCCGTATCTATCTTTTCACTTTTCTTTT ATCAAGTGTACAAATTGCTTCATCAAGTAATCTGGCTATAGAAGTTTGATGAAGATCTTATTTGGGTTTCTTCATTTCTT CTTTTAGATTATCAAAGTTTATATTTCCTTGTGGGGGATGAGAAATTGGTTAAATAATCTGCCTCTGAAGTTTGCCTGAA GATTTTGCCGAAGTTGTACTTGTGTTTAAAATTGACCTCATCTTTTATAAGATTAATTCAGTGAAGATTTTGGAAAATTT GAGTGAAGTTTAATCAGGATATTCTTAGATTTCGGTTAGGTTTGCTCTACCCTTTATAAACATTTATTAGACCATATATC TAGTCAATGTGAGACTTCTCAACATATACATATATGAATAGTGGCGCTGCAAAGTCACTTTTGCTTCTGTTTTCTTGAAT CTCTATCAGATAATTTATTTAATACTAACCCTTTTTTTCTGCTTCTTGGATTCTGTTTGATAATGTTATAGGTATTGGAC AAAATTGTATACTATACACATAACGATTTGAAGTGACTAAAGCATTCAGAATTTGTCAGATAGTGATAGAATCGAAAATG GAAGGTAGTTTATTTCCACCTTGGAAGAATGAGTCCTGGCATGGGTTAGAGTCAGAGGAGGGTGTGGAGGAACATGAGCA ACTCAAAATGGTGCCATCCTTGCCAGCCATACCTGAGCCACCGACACCCCTTGAGCCCATGGAGTTTTTATCCAGGTCAT GGAGTCTCTCTGCTTCAGAAATTTCAAAGGCTCTTTCAGAGAAACAACACAAACAAACCTTGCTTCATAAGAGTCCACCA CACACTTTAGCAGAAGCTATTTCCAAACCTCAATTAGCAGTAAGCCATTCTCCTCCAACTTTTAACCTTTCCTCTCACAA AATGACCATTTGTAATTGATTGAATTGAATGTATATTGAGTAACAATTGTTTTAAGTGTTCTAAACTTCTAGTAGCATGT TTGGTTTTATGCTGAAATATTCTAGTTAAAAGTTACAAGTTTTAATGTGTGTTTGGATTAGCGTAAGCAAAATTGATTTT GAAGTTGATTCAACTAAAATTACATCCGGCAAATATGAGTTAAAGTTGTGTGATTTATGTTTCGGTACCTTTATGGAAAA AAGTGGTTTTGTAGGGCAACGTTATGCAATTGAGTTATAAATTTTAGAATTAATTACGTAGAAGCAACTATGTGCTAAGA GGATCCAATTCTTGACCAATGAAATCAATTTTACTATCATTTCAACTGGTTAGAATTGATTTTAACCAACTGGGAATGAT TCTATTTTCCAAACATTATCTTAGTTTCTGATTAAAGGTGAATTTTGTGCAAATTGTATTGTGAAACCAAACAAGCATGG ACCGGATCACAAAAAGACTAAAGAAATTGAAATTCAAAGATGAATAAAAACATTCTTTTGATACATTGTGTGGTTTCATG CTACCTTTTTGCAGCTAGGCAATATCACACCTTCTTCTAATTGTAGAAGAATAGGTACCATTGGAAAATGGTTACATCAC AAGCATCGTACCAATACAACAAACATCACAATTAAGAAGAAAGAAAAGGCACGTCTAGAAAATGCACGTGTACATTCTGC TATTTCCATTGCTGGTTTAGCCTCTGCACTGGCTTCTGTCGCTGTAGTAAAGGACCCTTCTAGTGACTCTCACACCAAAT TGGATCTTGCAATGGCTTCAGCCACAAAGCTCTTAGCATCATATTGTGTTGAAATGGCGGAGTTAGCCGGAGCTGATCAC GACCGTCTGGCTTCTACTGTCAAATCTGCGGTTGATATTCAAACCCCTGGTGATCTAATGACTCTCACTGCTGCAGCTGC AACAGGTAGTTTCTCAATCTATCTACTTTGGGAAAATGTTTGTAAGTTTTGTTATATAAGGTATTGATAGGATGAATGTA TTAACTAACTTCTATTTAATCAGAATCAAATCTGTCACTATATAGGCTTGATTTCCATCTACATTGTCATCCAGAATTGA TTTTACTCTATATTAGAATTGAGTATGTGAGGTTTCTCAACGTAAAAACAAACTATATAGGCTTCTCTGGAATTTAGAAT TAAATGTAGAAATGATTTCCAAACAATGAATGAATATTGATTTTTCCTTGCTACATTATTTTCTTGATGCAATATCAGCT CTGCGAGGAGAAGCAGCTCTTAGAGCTCGATTGCCAAAAGAAGCAAAGAAGATTGCATCTATAAGTCCCTATGACAGAGC AATAGCAGCAGAAACGCATTTGCTTCCTGCTTTTGATGGTGAGAAGTTGGAACGTCATCCTCCATGCGTTGGAGACTTGT TGCAACTCACAGAAAAAGGTGATTTATGAGGACTTAGTTTTCTCTTCCAATAATAATACACATTATTCTATTTGGTTATC ATTATTTCTAATCAAAGGTTAGTGCACTTTTTCTCAGGTGCATTAAGATGGAAACATGTCACTGTTTACATCAATAAGAA AAGTCAGGTACACTAATCAGTACCTAACAAACAATGTTCATGTGGTTAAATGTCTTATTCATTCACAGATATAAGAAATT AAATGTCTTGTTTTTTCAGGTTAAACTTAAGATCAAAAGTAAGCATGTTGGAGGAGCTTTCTCCAAAAAGAATAAATGTA AGTGCTTTTTAGCATTAAAGAAACTCCTCACAAATAACAATTATGCACATATCTTGCAATTGGGTATTTTCTAATACAAT GTAACATTTGTTGTTACCAGGTGTGGTATATGGAGTTTGTGATGAAGATACTGCATGGCCATATAGAAAAGAAAGGGAAG CCTCAGGAGATCTCTATTTTGGTATCAAAACTGCACAAGGTCTTCTAGAATTCAAGTGCGAGAGCGAGCTCCACAAACAA AAATGGGTTGAAGGGATAGAGTTTTTACTTGGTCGTGTCAACTCTTTTGAAGCAACAGAACGATCTCTGCTCTTTTTAAA TATCAGTACCAGCACTTGATTTGTTTGGATTGTACATGTTACATCTAAAATTTTGCCAAACAACTATACTCCTAAGAATG TTATACCTATATGACAAAGAAAATGAAACAATAATAGTCATACTAGAGTTGTTTATGACCCAAGAACAATTAGTTCACAA ATAAAAATGGTTTTTCTGTAACTTAATTGAAAGTATATTGTAAATAACAAGCATAGTTCATGGTGCCCTGTTCGTTAATA CTACTTAACACTAATTTAATGCCTATTGATAAGAACTAAAAACATAAAAATGAACTCATTCAACATCAACCTCTTTTTTA TTTAGAAAAGGTTTGAAATTGTGATCCACTAACACGATTGCTCTCACAAGGTAACGAATTTTGGTTCCCCACAAGCATCC CAACCACAATTGCACTCGCATCAGCCCACATTTGTCGGTAACCCTACAACCACAACAGAAAAGGAGGATGCTTCATTGAT TATCCATGACATCCACATTGACACTTTTCCTTGATGCAGCTTCTGATATTGCAATCTGAAGGACAAAGCTTTGAGCAATC TTCATCAAGGGCACAAGTTGAATTTGTCAAGGTTTTGGTAGCTGAGTGTCCTGATCCAAAAGGGCATGCACATTGGTCAT TGACGCAAACACTAGGCAACCTAAGGCAGAGTTTTTCGCAGCCTCCTCCATCACATTGGCTTTCACAATCTGCATCACTT TTACATTTGTAAATTTGTTCTTGTGCTTCTACTACCATCCTTCTGAATTGTACACCTGCAAACAAAAACATGTAAACCTT TTAAGCTTCATATTTTTTTATGTGTGATTCTGAAATGTTGTGTGTTAGGAAGGGGAGGGAGAAAGACAAACTAGATGTGA CTGTGAGAGTGAAGATGATTATCAAGAAAGCCAAATTGGCTGAAGCTGCGTTCATGTTTAGCTGGCACAAAATTAATATT CCTCTGTTATGTTAAGAAATTTGAGTATCAACAAAGCCAATTTGATCCTTATAGTATTTTACTATTTTAGTTATTCATTA TTTAGTTTTGTACATGACATGCATTTGTTAATGGTGTGATTAATTGGTAGGTTGACGTTAGGTTAAACACATGTTAGTAG CTATCAAAG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0421800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGGTAGTTTATTTCCACCTTGGAAGAATGAGTCCTGGCATGGGTTAGAGTCAGAGGAGGGTGTGGAGGAACATGA GCAACTCAAAATGGTGCCATCCTTGCCAGCCATACCTGAGCCACCGACACCCCTTGAGCCCATGGAGTTTTTATCCAGGT CATGGAGTCTCTCTGCTTCAGAAATTTCAAAGGCTCTTTCAGAGAAACAACACAAACAAACCTTGCTTCATAAGAGTCCA CCACACACTTTAGCAGAAGCTATTTCCAAACCTCAATTAGCACTAGGCAATATCACACCTTCTTCTAATTGTAGAAGAAT AGGTACCATTGGAAAATGGTTACATCACAAGCATCGTACCAATACAACAAACATCACAATTAAGAAGAAAGAAAAGGCAC GTCTAGAAAATGCACGTGTACATTCTGCTATTTCCATTGCTGGTTTAGCCTCTGCACTGGCTTCTGTCGCTGTAGTAAAG GACCCTTCTAGTGACTCTCACACCAAATTGGATCTTGCAATGGCTTCAGCCACAAAGCTCTTAGCATCATATTGTGTTGA AATGGCGGAGTTAGCCGGAGCTGATCACGACCGTCTGGCTTCTACTGTCAAATCTGCGGTTGATATTCAAACCCCTGGTG ATCTAATGACTCTCACTGCTGCAGCTGCAACAGCTCTGCGAGGAGAAGCAGCTCTTAGAGCTCGATTGCCAAAAGAAGCA AAGAAGATTGCATCTATAAGTCCCTATGACAGAGCAATAGCAGCAGAAACGCATTTGCTTCCTGCTTTTGATGGTGAGAA GTTGGAACGTCATCCTCCATGCGTTGGAGACTTGTTGCAACTCACAGAAAAAGGTGCATTAAGATGGAAACATGTCACTG TTTACATCAATAAGAAAAGTCAGGTTAAACTTAAGATCAAAAGTAAGCATGTTGGAGGAGCTTTCTCCAAAAAGAATAAA TGTGTGGTATATGGAGTTTGTGATGAAGATACTGCATGGCCATATAGAAAAGAAAGGGAAGCCTCAGGAGATCTCTATTT TGGTATCAAAACTGCACAAGGTCTTCTAGAATTCAAGTGCGAGAGCGAGCTCCACAAACAAAAATGGGTTGAAGGGATAG AGTTTTTACTTGGTCGTGTCAACTCTTTTGAAGCAACAGAACGATCTCTGCTCTTTTTAAATATCAGTACCAGCACTTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0421800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEGSLFPPWKNESWHGLESEEGVEEHEQLKMVPSLPAIPEPPTPLEPMEFLSRSWSLSASEISKALSEKQHKQTLLHKSP PHTLAEAISKPQLALGNITPSSNCRRIGTIGKWLHHKHRTNTTNITIKKKEKARLENARVHSAISIAGLASALASVAVVK DPSSDSHTKLDLAMASATKLLASYCVEMAELAGADHDRLASTVKSAVDIQTPGDLMTLTAAAATALRGEAALRARLPKEA KKIASISPYDRAIAAETHLLPAFDGEKLERHPPCVGDLLQLTEKGALRWKHVTVYINKKSQVKLKIKSKHVGGAFSKKNK CVVYGVCDEDTAWPYRKEREASGDLYFGIKTAQGLLEFKCESELHKQKWVEGIEFLLGRVNSFEATERSLLFLNISTST
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 27 27 - –
PANTHER
PTHR31351:SF24
22 396 375 3.4E-158 –
PANTHER
PTHR31351
22 396 375 3.4E-158
IPR040269
Pfam
PF05703
41 73 33 9.5E-11
IPR008546
Pfam
PF05703
100 251 152 2.2E-48
IPR008546
Pfam
PF08458
278 379 102 7.0E-39
IPR013666

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0421800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…