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LotjaGi2g1v0422400.2

Overview

Field Value
Gene ID LotjaGi2g1v0422400
Transcript ID LotjaGi2g1v0422400.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description O-fucosyltransferase family protein; TAIR: AT4G16650.1 O-fucosyltransferase family protein; Swiss-Prot: sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910; TrEMBL-Plants: tr|A0A0B2RK23|A0A0B2RK23_GLYSO DUF246 domain-containing protein; Found in the gene: LotjaGi2g1v0422400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:92046351..92050908) extracted from Lotus japonicus Gifu genome v1.2.

AATTTCCTCTATTATTGTGGTAAATGCATAATATAGCGGCTGTGCGTGAGCGGATGTCAACTGGCTACTTGCTTATTGCA ACTAGTGGAGGATTGAATCAACAAAGAACTGGGGTAAGTTGGCATAAATTTTTTTATGATCAGCTGTCTTAGGCAGGGCA TGAGTTTTATGATATGCTAGATCATGATCATAAGGGTTTTATTTAAGATCAGCCATCTTAGTTGCTCCCCTACTGATTAA AGTATCAGAAAGTTGAGTTGTATACAATTTTCTCTTATCTAGTTGGCTCATTGAGTTGTTTTCAGTGAACATGAAGCTTG GGTTGTTTCTCTTTCCAAGCTGAAGCTAGGTAGATATTTATTTAATGATAATAAATAAGTTGATTATGTGGAAATGACAA TCATGTTCCTGCATCCAGATAACAGATGCAGTTGTTGTTGCACGAATTCTAAATGCTACACTAGTCGTACCTGAGTTGGA TCATCATTCTTTTTGGAAGGATGACAGGTAATCTGCAGATTCTATCATACATTTCCTATTTGAATCGAGTTCATCAGCTC ATTTAATAAGGACACTTTTGTTTGAATACAGTGACTTTATCAATGTTTTCGATGTTGATTGGTTCATTTCATATCTCGCA AAAGATGTTACTATTGTCAAAAGAGTTCCTGATAAGGTCATGCGGTCAATGGAGAAACCCCCATATACGATGCGTGTCCC AAGGAAATCAGAGCCTGATTATTATCTTGATCAAGTTTTGCCAATACTTTTGAGACGACAGGTGTGGCCACTTTACTTAT TGCGATTGACACATGCTTGCAATTTCATATTTCAATAGAAGATGTTTTGATTCATTAAATAACTGTTATGATAATAACAC TAGTAATTGGTGTTCTTTTATCATTTGCAGAATGTATCTGTGAATTTGGCTGGGGCAACTAACTAAAATTTATGAGATTT TGCAGGTTGTGCAGTTGACCAAGTTTGACTATAGACTTGCAAGTAACCTTGATGATGAGCTACAGAAACTACGTTGCCGT GTTAATTTTCATGCTTTGAGATTTACAAAACCTATACAAGAACTTGGTGAAAAACTTGTTGTCAGAATGCGAAAGATGGC AAACCGTTTTATAGCAGTCCATTTGAGGTTTCTTTGATGTTTCCCTTTTCACAACTTCTTTACATTGTCTGAGATTTGGA ATCATTATAACTGTTTGAACTATTTCAAAATGTTGAATTGGAAGTATTTGTTTACTTCTACGTTGGGGGGTTTCGGAAGG GGACCTCTCAAATTCAACTTTCTCATGCAACTCAATAATAGCAATAAGTTAATAACAGTTTCTTGTTGTTGTTTCATTCA AAAGTATTTGGGATGCAAGGGGGTTCCATGGTAGTTGCCACTAACAACAGCATTCGTGATTGATTTATGACAGGTTTGAA CCAGATATGCTAGCATTTTCAGGCTGTTATTTTGGTGGGGGAGAAAAAGAAAGACATGAGCTTGGTGAAATCAGAAAAAG GTGGACAACGTTACCTGTAAGACTACTTTCTATTGACTTCTAAGTTCTAGTGATAAAATCTTAGTCATTCAACTAGTAAG AAATGACATTTTGTCCTTTCTTAACTGCGCTGACTTTCTGAAGGTGTTGAAACCAGGGTTGTTAATGGCGGATAGCGTAG TGTAGCGGCAAGCCCAAAAAACGCTATTTCGAGCGCTATTGCGGCGCTATAGCGGAAAATAGCGCAAATAGCGGTGAATA GTGGAGTAGCGGTGAACCCCCAGGCCGCTACGCTATAGGCTATTGCGCGCTATAGCGCGCTATTAACAAGCCTGGTTGAA ACCTGCATTCTTTCGTGACACATAACCTGATTATTTTTCCATATAATATGTTAGGATTAATTATATTAGGATTAGTTATT ATAAATAGGAGTGCCCTCCTTAGGTTAGAGTTATGGATTAAATTATTATTGAGTTGTAAAGGGAACCAGCCCTATTGTAG AGGAACCAGCCTCTTGGTTCTAAGGGGAACCAGCCTCTTAGTTCTTATCTATCTTTATTTTCCAGTCTTTTATAATAAAA TACCAAAAATATTCCCATTTTCCCTATTTTCTCTATCGTTTCTCCACGTTAGGATTTTCGGGTCCTAACATAATACTTCT CAAATTTGAGGCTAATTATTTTTAATGGCAAAACAGGATTTAAGCCCAGATGGAGAACGGAAGCGAGGCAAATGTCCTCT TACTCCTCATGAAGTAGGTTTGATGCTGAGGGCACTTGGTTTTAGAAATGACACATACCTCTATGTTGCATCAGGAGAAA TATATGGTGGGGATGAGACTATGCAGCCTCTGAAAGATCTTTTCCCTAACATGTATACAAAGGAGATGCTTGCTAACGAA GAGCTGAAACCTTTCCTTCAATTCTCATCCCGCCTTGCTGCTGTTGACTACATTGTTTGTGATGAAAGTGATGTATTTAT CACTAACAACAATGGTAACATGGCCAAGATTCTTGCAGGTCGAAGGTAAGACTATATAAAATTGCTCTGATGTTCTCATT ATGTTTGTTTAGTTCATCAACAGACTCCCTGGCTTCTAAAAATCACATTAAACACAATCAAGAAAGGATTATCTTCATCT AGTAATGGAATAACTAAAATTATAACTATGATTGTTCCATTATGAAGTGCCTAGTGTTGCATTATTTACTATTAAGCTAT TTTGAGAACATGTGGGAGAGCTGTGGTTTGGCTTGAAGTTGGGAAAACTTATTGTAATTTACTCAATACTTGTTCGCTAG CAATCTTGTAGAAAAATTAAGATAGATTCTCTAATGAACTTTAGAATTGTGGAAAGAAACAGTGTAGAGGATATAGACTG GGTTAAAATTGGTTCAGGATTCAGGTACAGACAATGTCTTCAAAAGCTTAAGTTATTGAGTGAAACACATGAATGGTTTT ATATTATATTTCTCACTCACACAAGAGCTCACTGGGCTTGAAGCGGCGTAAACAATGGACAAACACATTTACCTTGTGCT GTAATTCATTTTTTTATTAGAATAATGGGGGTAACAAGGATCAAACTCTAGACCACTTGGTCATAGAAGCTCTGGCTATG TTATGAACCAACTACCCCAAAGCTTAAGCTGTTGAACGATAGGTACCCGCATCGTCCCAGGGTTTAGTTAGTTAGTTAAG GGAGTTCACTTAGTTTGAGAGTTAGTTACAGAGAGTTATCATCTTTTTGAAACATTTGGTAATTGGGCTTTAGGGAGAGG AGCTAGGTGCCTAGGACTCTCTGATTACTCAGAGCATCTTGTAGTTTTCTATACTGAATAATACTACCAGTTTTCTTCTT CTTGGCTGGTTCCTTTAATTGGACAAAGACATATGAATGATTTTACATTATATTTCTCACTATTCTTCTAGCCTTCTAGA CGCTAGCTCTCATGACATGAACATTATTGAGGAGCAGTTGATCTTGTAGCAGGATCAACAATTGCTTATTTGGTATATTT TGGACTCAGCAAAGTTCAGTTATAGGGCCTTACCTTCTTAAGTTCCAATGAAAGTTGAGGTTGAATCATATATGACCAAA TATAGTTCCCATACCATAACCTTGTTAGATTAGTCGTTGCTTATTAGCTTAGCCGACAATGCCCTTCACTGCGGAGTGGG GACCATTTTTCAGATGTTGTTTAGACCTTAGGCACCTTCATTGAACTAAATAACAAAACCTGATCTGATATGTTATGGAT AGTAGATTAGGTTGGGTTCATTCAAGTCAATCTTTTCTTGTATGATAAAAAAGGCAACTACTTTGCTAATACTTGTATTC TAGAATCAATTAATGTTCTAATGTTCAGCCAAAATTTGTTTTCCCCTATAATCAACAATTGAGGAGATTTAAATTTCCTT ACTGAAATTCCTCTTTTACCAAAAAAGAAGTGAGTTGGTTTCATTTTTTCCTTTTTTTTTTTGGCTAAAGAAAAATTTGT AATAGCTTGCTTCAGGAGGTTTCTTGAAAGCCTGTATTTGCATTTCATTTTATAACAAAGAGAAAATTCAAAGCTTGATG CTAAAGTATGCTGGATCAGGGTCTTGAGCTGTCATGCCCATGTGCTTCCTGTGGGTCGTAATTGCTTTTCCTGACTAAAC TTTTTTTTTCCTTAACCTTTTACTTTTGGCGTTCTGTTAAATCTTTCACTTTGTTTATAACAGGAGATATATGGGTCACA AAAGAACAATTAGGCCAAATGCAAAGAAGCTCAGCACACTGTTCATGGGAAGGCATCAGATGGAGTGGGATACCTTCGCG AGAAAGGTTAAGGCATGCCAAAGAGGATTTATGGGAGAGCCAGATGAGATGAGACCGGGACGAGGTGAATTTCATGAATA TCCAAACTCTTGCATATGTGAGAGACCATATGTGGATGAAGAAGAACGCTATACAAACATGGATACTGTCTCCCTAAACA CGTTGCAATAATTACGAGTGTCTCACAGCAAAAGCTGAATCCCACGTTCAATGAGCCAACACATGATCAAGTAAGTGA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0422400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCATAATATAGCGGCTGTGCGTGAGCGGATGTCAACTGGCTACTTGCTTATTGCAACTAGTGGAGGATTGAATCAACA AAGAACTGGGATAACAGATGCAGTTGTTGTTGCACGAATTCTAAATGCTACACTAGTCGTACCTGAGTTGGATCATCATT CTTTTTGGAAGGATGACAGTGACTTTATCAATGTTTTCGATGTTGATTGGTTCATTTCATATCTCGCAAAAGATGTTACT ATTGTCAAAAGAGTTCCTGATAAGGTCATGCGGTCAATGGAGAAACCCCCATATACGATGCGTGTCCCAAGGAAATCAGA GCCTGATTATTATCTTGATCAAGTTTTGCCAATACTTTTGAGACGACAGGTTGTGCAGTTGACCAAGTTTGACTATAGAC TTGCAAGTAACCTTGATGATGAGCTACAGAAACTACGTTGCCGTGTTAATTTTCATGCTTTGAGATTTACAAAACCTATA CAAGAACTTGGTGAAAAACTTGTTGTCAGAATGCGAAAGATGGCAAACCGTTTTATAGCAGTCCATTTGAGGTTTGAACC AGATATGCTAGCATTTTCAGGCTGTTATTTTGGTGGGGGAGAAAAAGAAAGACATGAGCTTGGTGAAATCAGAAAAAGGT GGACAACGTTACCTGATTTAAGCCCAGATGGAGAACGGAAGCGAGGCAAATGTCCTCTTACTCCTCATGAAGTAGGTTTG ATGCTGAGGGCACTTGGTTTTAGAAATGACACATACCTCTATGTTGCATCAGGAGAAATATATGGTGGGGATGAGACTAT GCAGCCTCTGAAAGATCTTTTCCCTAACATGTATACAAAGGAGATGCTTGCTAACGAAGAGCTGAAACCTTTCCTTCAAT TCTCATCCCGCCTTGCTGCTGTTGACTACATTGTTTGTGATGAAAGTGATGTATTTATCACTAACAACAATGGTAACATG GCCAAGATTCTTGCAGGTCGAAGGAGATATATGGGTCACAAAAGAACAATTAGGCCAAATGCAAAGAAGCTCAGCACACT GTTCATGGGAAGGCATCAGATGGAGTGGGATACCTTCGCGAGAAAGGTTAAGGCATGCCAAAGAGGATTTATGGGAGAGC CAGATGAGATGAGACCGGGACGAGGTGAATTTCATGAATATCCAAACTCTTGCATATGTGAGAGACCATATGTGGATGAA GAAGAACGCTATACAAACATGGATACTGTCTCCCTAAACACGTTGCAATAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0422400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MHNIAAVRERMSTGYLLIATSGGLNQQRTGITDAVVVARILNATLVVPELDHHSFWKDDSDFINVFDVDWFISYLAKDVT IVKRVPDKVMRSMEKPPYTMRVPRKSEPDYYLDQVLPILLRRQVVQLTKFDYRLASNLDDELQKLRCRVNFHALRFTKPI QELGEKLVVRMRKMANRFIAVHLRFEPDMLAFSGCYFGGGEKERHELGEIRKRWTTLPDLSPDGERKRGKCPLTPHEVGL MLRALGFRNDTYLYVASGEIYGGDETMQPLKDLFPNMYTKEMLANEELKPFLQFSSRLAAVDYIVCDESDVFITNNNGNM AKILAGRRRYMGHKRTIRPNAKKLSTLFMGRHQMEWDTFARKVKACQRGFMGEPDEMRPGRGEFHEYPNSCICERPYVDE EERYTNMDTVSLNTLQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF009360
2 401 400 2.4E-181
IPR024709
PANTHER
PTHR31818
5 405 401 2.4E-274 –
PANTHER
PTHR31818:SF3
5 405 401 2.4E-274 –
Pfam
PF10250
15 331 317 2.5E-74
IPR019378
CDD
cd11299
15 336 322 2.21131E-168
IPR024709
Gene3D
G3DSA:3.40.50.11350
150 340 191 1.4E-5 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0422400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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