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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0425700 |
| Transcript ID | LotjaGi2g1v0425700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G04590.1 PPR containing-like protein; Swiss-Prot: sp|Q2V3H0|PP322_ARATH Pentatricopeptide repeat-containing protein At4g18975, chloroplastic; TrEMBL-Plants: tr|V7CIZ4|V7CIZ4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0425700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92347190..92350234) extracted from Lotus japonicus Gifu genome v1.2.
GTCAGGCCCAGTCTGAGTGAGTAACAAACGAGAGGGAGAAAGAAAAACAACAACAGACAAATAGGCGGCGCCGGCTCCGG TGAGTTCAGGAAGCGGCGACGAACTTCCCTCACACCACCAACCACCATGTGGCGGTGGACGTCACCGCGAATCTCTTATC TCGTGAGCCTCTCTCTCTCTCTCTCTCTCTCTCTTTATTGTTGTTTCTCTATGTTACTTAGAACATTCATGTCACTTCGT AATTCAGGTTGGAAGATTGAGTCAAGTGAAACTGAGTGATGGTCGTTGCTGTTACAGTCAATTGTTGCATCCTTCATTGG ATTTACAGTCTTCACAGCCACAGGTATTCAACCAACATTCACAGTTTGTGAGTTACCTACCTTACATTACATGCTTCATG CCATAATTGTTTGAATTCATTTTCCCCGCAGACAAATCATCTTCCGAAGAGTTATATTGGGGAAAATGTATCTAGAAAGG ATAAAACCAAGTTTCTTCTCACTACAGTAAGTAGTTATAATAGTAATGTAATGTATTTGATACTTTAAGCATGTAAGGGG ATCTCAATTTGTTGTTTTGAAACCAAAAATTTGCAGCTTCATGAAATCAATGATAGTAAGGAGGCTGTGTATGGTGCCCT TGATGCTTGGGTTGCCTGGGAGCAGAACTTTCCCATTGGCTCATTAAGACAGATATTGTGTAATCTTGAGAAGGAGCAGC AGTGGCATAGAATTGTTCAGGTATTACTCAAGTGGTGCTTCCTATCTATTTATTTTTAGGCTTTTTCTTTGTCAAAATAA AGCATTTCCTATAATGAAATTGAACATAGAAAGAGGAGAGTGCAGACATGTAGTTAGTGATATGTTAGACTGAGGGTAAT AAGTAACTTCTACTCTTAATGGGGATGCATTGCAAGTTAAATGGATTTGGATAAGATAAGCTTACAATTACTATAAAGCT TATGACTCTGGAACAAAAAATGGAAGACATTCAATGAGCCTATCTCTAGTGATGGAAGTGCATGTTGCCAAACAAGTTAA TTGCCAACATTAGGTGGTTTTATCATTTAACACTGGTTCTTTAATATCCCATCCCAGGTAATTAAATGGATGCTGAGCAA GGGGCAGGGGACAACAATGGGAACATATGGTCAATTGATACGAGCTTTAGATATGGACCATAGAGTGGAAGAAGCACACC AATTCTGGCAAATGAAAATTGGCACTGATCTGCATTCTGTTCCTTGGCAGTTATGCCATCTCATGATATCAGTATATTAT CGCAACAACATGCTTGAAGAACTTGTTAAGGTAAGCTTTCGATTGTGGCATTTCTTATTTTTTCCTGATAATATGTTATA CCACTTATTTGTCTATTCAATATGCTTGCAATGGTGACAACTTGATTGGTTGGTACTTTTCTCCCAATAGTGGAATGAGG AAATTTTTTGTTTTTAATAGATTTCATTCCAATGGCGTGATTGATCCATCATCCATGTAAATGATTGTCAACATCGCTTA ATTGAATAAAGCTTGGTTATTGTTATTGTTGTATTCCAATATTAGTCTGCAATGTGTTACAATATTAGCTTGGTTGTCCT GGATTTTGTTTCTATTGGTTCTGCTGCACTAAATTGATTGTCTGATTGGATGAATCACTTTTAGTAGCAATAGAATGATA GATGTTCTTCATTTATTGAAAATATTCATATTAATAATTAAAGCTAGAAATGCAGTTGATGAGAGCTTAAATAAAACAAG AATATTACATGCAGTGTTCCTTCAAACTCACTTACCAGTAACCTTTATTTGGAGTTTTATTATTTGCCCTGTTCTGCTCT TTTTACGCCAACCTTCAAATGCGAAAAATCTTCACCTATATGAAACTGTAACTGTTGAGATTTGAGAAGTGGAATGAATA GCTGTCATCGAAGTTATAGATTCTGGTCATTACTATGTTGATTTTGATCAATGTCAAAGGATAACAAAACAGTTGTTTAG CATTAATGAATAATATTCATGGTCTGAATATAAAAGAATAGAATTGAATACTTCACTATTTCATTTCTGTTGAGGGGAAA AATAAAATAATTTGCTTATATCAGTTTGTCCGTTTACAATATTGTTGTACTTTATGTAAAATTGAGCTTGCATCCTTACT CTGTTTGTTCTATAGTTCTATACATTTCTAGTAAGATTAATATCCAGTTAACCTTTGCTTCTTGTTCTTGTTCTTTTGAT AAAAAGCTTTTCAAGGGACTGGAAGCTTTTGATCGTAAGCCTCGGGATAAACTAATCATTGACAAAGTGGCAAATGCCTA TGAGATGTTAGGTTTAGTTACAGAGAAAGAGAGGGTGCTGGAAAAATATAGCCATCTCTTCAAAGAGGAAAGACCAACCA AGAAACGTGGAAGGAAGTCAGGTGTGACAAAGAAGAAAGAGAAACTCGAGGATTCTGGAGAATCCTCATCTGAGGAGAAC TGAAGGTCAGGTACTCTCATTTTTTCTTTTTTCCAAATTGGATTGGATCTTGAACTGGTATGGTTGCAAAGTATTGCAAG AGTAAAATTTTCAGGGGCACTCATACTCATGTTTTGTTTCAGACAAAACACATTGCTCTTTCTAGACAGAGAACTGATTC CAGTCTTTCATGCTCACCAGTTGAATTTTCTGAAGAAAGAACCTGAAGGTGTTTATTATTCGACTGTTTGAATTTTCAAA GCTAGATCCCATGTCATGCAGCTGGATGTCTGAGGTGTTAAGTTAAAGTTGCTTCTAATAGCCATCAGCCAATCATTTGG AGAGGATGGTTCAAACAATTTTGCTCCCATTTATACTGAGCTCGGTAGTTAAAAGAAAAATAAACAAAAAAATATGAATA TTTTTTTTTATGCATCATGAACCTGGACTATTATGATTTGTAAAATTGTAGTATCAAGGGCAGCATGTAGAAAACTTGAC TGCTTATCAAGTCTTGGAATGTGTCTTGGAATGTGTGAATATATTATTTGATCATATAATTATCATATGTTCATTTATGG ATGAG
CDS sequence (LotjaGi2g1v0425700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGCGGTGGACGTCACCGCGAATCTCTTATCTCGTTGGAAGATTGAGTCAAGTGAAACTGAGTGATGGTCGTTGCTG TTACAGTCAATTGTTGCATCCTTCATTGGATTTACAGTCTTCACAGCCACAGACAAATCATCTTCCGAAGAGTTATATTG GGGAAAATGTATCTAGAAAGGATAAAACCAAGTTTCTTCTCACTACACTTCATGAAATCAATGATAGTAAGGAGGCTGTG TATGGTGCCCTTGATGCTTGGGTTGCCTGGGAGCAGAACTTTCCCATTGGCTCATTAAGACAGATATTGTGTAATCTTGA GAAGGAGCAGCAGTGGCATAGAATTGTTCAGGTAATTAAATGGATGCTGAGCAAGGGGCAGGGGACAACAATGGGAACAT ATGGTCAATTGATACGAGCTTTAGATATGGACCATAGAGTGGAAGAAGCACACCAATTCTGGCAAATGAAAATTGGCACT GATCTGCATTCTGTTCCTTGGCAGTTATGCCATCTCATGATATCAGTATATTATCGCAACAACATGCTTGAAGAACTTGT TAAGCTTTTCAAGGGACTGGAAGCTTTTGATCGTAAGCCTCGGGATAAACTAATCATTGACAAAGTGGCAAATGCCTATG AGATGTTAGGTTTAGTTACAGAGAAAGAGAGGGTGCTGGAAAAATATAGCCATCTCTTCAAAGAGGAAAGACCAACCAAG AAACGTGGAAGGAAGTCAGGTGTGACAAAGAAGAAAGAGAAACTCGAGGATTCTGGAGAATCCTCATCTGAGGAGAACTG A
Protein sequence (LotjaGi2g1v0425700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWRWTSPRISYLVGRLSQVKLSDGRCCYSQLLHPSLDLQSSQPQTNHLPKSYIGENVSRKDKTKFLLTTLHEINDSKEAV YGALDAWVAWEQNFPIGSLRQILCNLEKEQQWHRIVQVIKWMLSKGQGTTMGTYGQLIRALDMDHRVEEAHQFWQMKIGT DLHSVPWQLCHLMISVYYRNNMLEELVKLFKGLEAFDRKPRDKLIIDKVANAYEMLGLVTEKERVLEKYSHLFKEERPTK KRGRKSGVTKKKEKLEDSGESSSEEN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 39 | 257 | 219 | 4.4E-124 | – | |
| Gene3D | 86 | 266 | 181 | 1.5E-9 | ||
| MobiDBLite | 237 | 266 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0425700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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