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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0426100 |
Transcript ID | LotjaGi2g1v0426100.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Phytoene synthase; TAIR: AT1G62730.1 Terpenoid synthases superfamily protein; Swiss-Prot: sp|A2AIL4|NDUF6_MOUSE NADH dehydrogenase (ubiquinone) complex I, assembly factor 6; TrEMBL-Plants: tr|I1LWA3|I1LWA3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0426100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92382133..92386167) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAACAAAAAACTCTAATTAACGATGAGGCCCACGTGGCTGTTTTCCTTTCCCTCTATAGCGTGACCTAAAGTAAACG CATCAAAACCCTGTTTTCCACTCATAATTCTTCCCTTGAACTTCCTTCGTTCTAAGTTCCCTACAAACAAACAAACAGCG TAGTAGTACCTTCTAGAACAGACAAGCAAAATTGCTTCAGCTGTTGTGTCACTCACGTTGCTTACACATTCGAGAGAGGA GGAAGGAACTGATTCTGCTCTGATGAAGTGAGTGTGATTCTCATATGATAAGGTAAAGCTCCATCTTCTCAATTTCATTG ATTTCGCTAATCGCAGATCTATTACCTCCAATTGCATTGTTTGGGATTTCATTCTCTCGTTTTGCCTTTCCCTCAAATTA AGGTAGATTGATTGTCAAAGAGGTTCGACTAGGCCCCTAGTTTCTGCAACCATCCGATTCAAGGTTTGCTCTCTTCAACA TGCACCTTCCTCTCCTGCTTGCGCTTGTCTTTTCCATTTTCGAACGAATCTTATATGCAAAAGACAACAAACTTAAAGCA GATTGAGCTAATGTTAAAAGAAAAATAAAATACAGTGCAACCAACTAGTGATTTATGTTCATTGGGTTCTGCTATGGCTT CATGTGCTGTTTTTCTTCATATAACCCCTTTTTGTGAAGTGAAACTGCATATTGTGTTTGCTTTTATTCTTCTTCTTTGT GTGAATGTTTTTTTCTTCTTATTGTGTTTTCTGGATAATGATGTCTTTATATGCTGCATATTGTGTTTGCTTTGAAAGTA TGATTGTGGATTCTTCTTATTGTATTGTCTTTGAATAACTCCAAAAAATGATGTGTTTCTCACTTCATCCCATTTCTTCA ATCTTCCTGTTTCAGCAAACTGCTATCTCTTTAAATGTCTCTGGAACCTTTGCCATTTGATGAAATTGCTGCTATTGTTG ATTGCTCAAGTTATAACCTTAAAAATATAAATTATCAGCTATAGTTGCTTTGCTTGATGGTTAGTCATAGCAAGCTAACA GTAATAGGTGATTCTGAAACATGGACCACATGCCTCTACTTCAAATGGCTTGGCAGTATTCATGATGGGTATTTGACTAT GCATATTCTTACTTGGGCGATAACGCCATTATTTTACTGAGTTCCCCCCAAGCATATTATAGAGCTCAATCCCCAATTAG TGGTATAAGGCTTGGCAGCTTGGCTGCTGTTGTAACATATCTTTTCTTAAAGAGCTGGTGAGCAGTGATGAGTTGCTCAA CACCTTATCCATGTATATAAAATATGACAGGAGTACAACACAGAGGGGAGTGTGATATAATTGTTAACATAATGTAAACT TTACATATGATCATTAAAGAATTGTTTTGTTCATTAGTTTAGAGTAGAGGTTATTCTGTAAAGACAGTGAGAATTAGCTG TGATAATTAGCTCTTTACTATAGTCAGTGTTAGTAGTGAATAGAATTAGAGTTAGTTACTGCTCTTAACTATGCAAGTTG AATTGTTAGCTAGAGCATGTATTGAATTAGAAGCTATTAGCATATAGCAGTTATAACTGATTCTAATCAGTTGTGGAATT AGTTAGATTAGTTACACTTGTATAAAAGCTTGTTGAAGAGAGCTTATTCAATAATGAAAATCATTTCATTTAGTTCAACA ATTCTGAAGTTTCTGTAACTTCTTCTTTTCTCTGTTATTTCTGAAATTCGTTTTATATTCATTCTTAACTTCTGTGCAGA ATTAGTTTGTAGGTTGCATTCTTAAAGGAAGAAACCTGTTATCAAGTTATTTTTTAAGATATATAAAATTATGCATGTTT CTGCATAATATTTATGCATCTATACATAACGATTTCTATGTTTCAATTTTATTTTGGATTGAATGATAATGTTCTGACTG ATATACCTTTCATCTGTAGGCACTCACGTGAGGATTTAATGAATGGTGGTTCTGCATCTAGGAAAGCTTTCTCCCATTGT GTGCAACAAGTGAGAAATTATGATTATCATCACTATCTTTGCCTTCTTGAACTGCCTCCATCTTTGCGGAAGGCTGCATT TGCACTCCGTGCCTTGAATGTTGAAACAGCTAGAGCAATGGATGTTGCTTCAGATCCCAGGATTGGACTTATGCGCCTTG TATGGTGGCAGGAAGCCATTGACAAAATGTTTGCCAATAAACTGATTGAACACCCAACAGCACAGGCCGTGTCATCTGTG ATAGCTGAGACCAAAATCAGCAAGACATGGTTAAAACGATCTGTTGAAGCTCGGATTAATGATGCAAGAAGAGAGGTTAC TGACATGCCAAAAGGTATGGAAGAGTTGGAGAAATATGCTGAGGACACTGTATCAACAATGCTGTACTTGACACTTCAAG CTGGTGGTATCAAGTCTACCGCAGCTGACCATGCAGCCTCACATGTTGGTAAGGCTAGTGGTATTCTTTTGCTCCTTAAA TCACTGCCCTATCACGCCGGTCGCAACCGACATTTTTCCTACATACCAACTTCAGTAGCATCCAAGCATGGTCTATTAGT TAAAGAGGGAAATGGAGAAGAGAGGTGGGTGGATTCTCGCGAGGGCCTCTGTGACGCAGTTTATGAAATGGCATCAGTAG CCAATGCACACTTGCAGAAGGCTCGGAAGTTAGCAGAAAGTGTGCCTGCTGAGGCTCTTCCAGTGCTCCTGCCAGCAGTG CCTGCTCAGGTTCTGTTGGATTCCCTAAGTCGGGTGCAGTTTGACGTGTTTGATCCAAGGCTAACGCGAGGGGTGCTAGG GATTCCACCTTTGTGGTACCAGCTTAAGCTTAAGTGGACTTCATGGAGAAGGAAATACTAAAGAGGTTTACGTAGCTTTA CTCAACAGTTAGAGCTGTTGCCTGTTAGGCTCAGGTAATATTTTTTCTCGATATGAATGAGTATTTGTTTATTTATTTAT CTAATAATGATATTCTGCAACCCTTATTGTTGGCAGACTTACTGGGCCTGCAATTGTTAATCCAACTATTTAGTCATGAA TTTAAATAACTTGTTAGCCCAAAGTTTATTTCCTGCCACCGTGAACTTTCCTCCACACATGGCTAGTCAGAAACCCAAAT GGAAGTTGTTAACCAAAGAGATGTCAAGCTTTTCTTCATGTGACCAATTAAATGGCGGTACATGCCTATCTCCTATCAAG ACATCATATCCTACCCCTGACTAGGTTCCTTTATTTTCATTTCCCAGGAAAATAACTGATGACCCGGGATTTAAGGCTAT TTTCCTGGTTTATTTGCATGTAGTTTAATATAGTTTTTAGGATATTTCGGTCATTTTAGGACACTTTAGGCTTAGTTCAT GCATTTTAATGTTTTCATTTAGTTTTAGTATTTTTCTATATTTTTTATGTTATTTTTATAGATTTCATTACGATTTAATC AAGTTATTTGAATTCGGTATCTTACTTTATCTTCTAGTTAATCTCTATTATTGGTTTTTAATTATTTTCCTTTATTATTA TTGTTATTTTAGGAGAAGATGTGGAATCAATGAGCAAATCAAGGGAGAGAGCCAAGAATCTCGAAGTCTGGAGCAATCTG GATTTCTTTGCGCCAGTTCTGCACCAATTTCCTGTTGCATTTCGCGCAGACGCGCCAAGGAAGTAGCTGCTGGAAAATTC TGCGCCAGTTTTGTGCGAGTTCCTTCACGAAGTTCGCGCATTTACGCGAAATATCTGTCAGACTCTATTTAAGTGCGTTT TTAACCTATTTGATGGATCTTTTCATCTTTTCTTTTCTCCTAAACCTAATAAACACTTTTGGGAGACTTGGAGGCAATTT CTTGGTGAAGAGGAAGGCTAGGCCCTTGAGGGCCGGTGTCAGGGCCATGGAGGAGGTGACAGCTTCTCCGGACGTCCATG GCTCCGTTCCATTTTGGGTTTTGTTTTTCTCTTTACCTATTTTTGTGTTGACTCTCTTTTGGTATTTGGAATGACTTAAT TTGATTTTCTCTCTTATTCAACATACTATTATGCA
CDS sequence (LotjaGi2g1v0426100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGGTGGTTCTGCATCTAGGAAAGCTTTCTCCCATTGTGTGCAACAAGTGAGAAATTATGATTATCATCACTATCT TTGCCTTCTTGAACTGCCTCCATCTTTGCGGAAGGCTGCATTTGCACTCCGTGCCTTGAATGTTGAAACAGCTAGAGCAA TGGATGTTGCTTCAGATCCCAGGATTGGACTTATGCGCCTTGTATGGTGGCAGGAAGCCATTGACAAAATGTTTGCCAAT AAACTGATTGAACACCCAACAGCACAGGCCGTGTCATCTGTGATAGCTGAGACCAAAATCAGCAAGACATGGTTAAAACG ATCTGTTGAAGCTCGGATTAATGATGCAAGAAGAGAGGTTACTGACATGCCAAAAGGTATGGAAGAGTTGGAGAAATATG CTGAGGACACTGTATCAACAATGCTGTACTTGACACTTCAAGCTGGTGGTATCAAGTCTACCGCAGCTGACCATGCAGCC TCACATGTTGGTAAGGCTAGTGGTATTCTTTTGCTCCTTAAATCACTGCCCTATCACGCCGGTCGCAACCGACATTTTTC CTACATACCAACTTCAGTAGCATCCAAGCATGGTCTATTAGTTAAAGAGGGAAATGGAGAAGAGAGGTGGGTGGATTCTC GCGAGGGCCTCTGTGACGCAGTTTATGAAATGGCATCAGTAGCCAATGCACACTTGCAGAAGGCTCGGAAGTTAGCAGAA AGTGTGCCTGCTGAGGCTCTTCCAGTGCTCCTGCCAGCAGTGCCTGCTCAGGTTCTGTTGGATTCCCTAAGTCGGGTGCA GTTTGACGTGTTTGATCCAAGGCTAACGCGAGGGGTGCTAGGGATTCCACCTTTGTGGTACCAGCTTAAGCTTAAGTGGA CTTCATGGAGAAGGAAATACTAA
Protein sequence (LotjaGi2g1v0426100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNGGSASRKAFSHCVQQVRNYDYHHYLCLLELPPSLRKAAFALRALNVETARAMDVASDPRIGLMRLVWWQEAIDKMFAN KLIEHPTAQAVSSVIAETKISKTWLKRSVEARINDARREVTDMPKGMEELEKYAEDTVSTMLYLTLQAGGIKSTAADHAA SHVGKASGILLLLKSLPYHAGRNRHFSYIPTSVASKHGLLVKEGNGEERWVDSREGLCDAVYEMASVANAHLQKARKLAE SVPAEALPVLLPAVPAQVLLDSLSRVQFDVFDPRLTRGVLGIPPLWYQLKLKWTSWRRKY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 3 | 271 | 269 | 1.1E-20 | ||
PANTHER | 5 | 300 | 296 | 2.7E-113 | – | |
PANTHER | 5 | 300 | 296 | 2.7E-113 | – | |
SUPERFAMILY | 10 | 290 | 281 | 2.16E-48 | ||
Pfam | 18 | 275 | 258 | 8.4E-49 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0426100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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