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PF00494

Source: Pfam

Description

Squalene/phytoene synthase

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009058
Biological process Biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Subterm of
GO:0016740
Molecular function Transferase activity Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
Subterm of

Associated Lotus transcripts 19

Transcript Name Description Predicted domains Domain count
Lj0g3v0184729.1
– PREDICTED: phytoene synthase, chloroplastic-like [Glycine max] gi|356526962|ref|XP_003532084.1|
Domains
16
Lj0g3v0184729.2
– PREDICTED: phytoene synthase, chloroplastic-like isoform X2 [Cicer arietinum] gi|502178716|ref|XP_004516319.1|
Domains
15
Lj0g3v0278879.1
– Phytoene synthase [Medicago truncatula] gi|357462675|ref|XP_003601619.1|
Domains
13
Lj0g3v0278879.2
– PREDICTED: phytoene synthase, chloroplastic-like [Cicer arietinum] gi|502135077|ref|XP_004502211.1|
Domains
15
Lj2g3v2002380.1
– PREDICTED: UPF0551 protein C8orf38 homolog, mitochondrial-like [Glycine max] gi|356550901|ref|XP_003543821.1|
Domains
7
Lj2g3v2507910.1
– PREDICTED: LOW QUALITY PROTEIN: phytoene synthase, chloroplastic-like [Glycine max] gi|356553225|ref|XP_003544958.1|
Domains
14
Lj2g3v2507920.1
– Phytoene synthase [Citrus limon] gi|40809755|dbj|BAD07286.1|
Domains
13
Lj3g3v3386550.1
– Squalene synthase [Lotus japonicus] gi|28208268|dbj|BAC56854.1|
Domains
18
Lj3g3v3386560.1
– Squalene synthase [Lotus japonicus] gi|28208268|dbj|BAC56854.1|
Domains
18
LotjaGi1g1v0100600.1
– Phytoene synthase; TAIR: AT5G17230.1 PHYTOENE SYNTHASE; Swiss-Prot: sp|P49293|PSY_CUCME Phytoene synthase, chloroplastic; TrEMBL-Plants: tr|A0A0B2S730|A0A0B2S730_GLYSO Phytoene synthase, chloroplastic; Found in the gene: LotjaGi1g1v0100600
Domains
17
LotjaGi1g1v0100600.2
– Phytoene synthase; TAIR: AT5G17230.1 PHYTOENE SYNTHASE; Swiss-Prot: sp|P49293|PSY_CUCME Phytoene synthase, chloroplastic; TrEMBL-Plants: tr|A0A0B2S730|A0A0B2S730_GLYSO Phytoene synthase, chloroplastic; Found in the gene: LotjaGi1g1v0100600
Domains
17
LotjaGi2g1v0426100.1
– Phytoene synthase; TAIR: AT1G62730.1 Terpenoid synthases superfamily protein; Swiss-Prot: sp|A2AIL4|NDUF6_MOUSE NADH dehydrogenase (ubiquinone) complex I, assembly factor 6; TrEMBL-Plants: tr|I1LWA3|I1LWA3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0426100
Domains
6
LotjaGi2g1v0426100.2
– Phytoene synthase; TAIR: AT1G62730.1 Terpenoid synthases superfamily protein; Swiss-Prot: sp|A2AIL4|NDUF6_MOUSE NADH dehydrogenase (ubiquinone) complex I, assembly factor 6; TrEMBL-Plants: tr|I1LWA3|I1LWA3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0426100
Domains
6
LotjaGi2g1v0426100.3
– Phytoene synthase; TAIR: AT1G62730.1 Terpenoid synthases superfamily protein; Swiss-Prot: sp|A2AIL4|NDUF6_MOUSE NADH dehydrogenase (ubiquinone) complex I, assembly factor 6; TrEMBL-Plants: tr|I1LWA3|I1LWA3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0426100
Domains
6
LotjaGi3g1v0513800.1
– Squalene synthase; TAIR: AT4G34640.1 squalene synthase 1; Swiss-Prot: sp|P53800|FDFT_NICBE Squalene synthase; TrEMBL-Plants: tr|Q84LE3|Q84LE3_LOTJA Squalene synthase; Found in the gene: LotjaGi3g1v0513800
Domains
20
LotjaGi3g1v0513800.2
– Squalene synthase; TAIR: AT4G34640.1 squalene synthase 1; Swiss-Prot: sp|P53800|FDFT_NICBE Squalene synthase; TrEMBL-Plants: tr|Q84LE3|Q84LE3_LOTJA Squalene synthase; Found in the gene: LotjaGi3g1v0513800
Domains
20
LotjaGi6g1v0036600.1
– Phytoene synthase; TAIR: AT5G17230.1 PHYTOENE SYNTHASE; Swiss-Prot: sp|P08196|PSY1_SOLLC Phytoene synthase 1, chloroplastic; TrEMBL-Plants: tr|G7JA42|G7JA42_MEDTR Squalene/phytoene synthase; Found in the gene: LotjaGi6g1v0036600
Domains
16
LotjaGi6g1v0177100.1
– Phytoene synthase; TAIR: AT5G17230.1 PHYTOENE SYNTHASE; Swiss-Prot: sp|Q9SSU8|PSY_DAUCA Phytoene synthase, chloroplastic; TrEMBL-Plants: tr|I3T1X4|I3T1X4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0177100
Domains
17
LotjaGi6g1v0177100.2
– Phytoene synthase; TAIR: AT5G17230.1 PHYTOENE SYNTHASE; Swiss-Prot: sp|Q9SSU8|PSY_DAUCA Phytoene synthase, chloroplastic; TrEMBL-Plants: tr|I3T1X4|I3T1X4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0177100
Domains
16

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd00683 CDD 1 5.26