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LotjaGi2g1v0426100.3

Overview

Field Value
Gene ID LotjaGi2g1v0426100
Transcript ID LotjaGi2g1v0426100.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Phytoene synthase; TAIR: AT1G62730.1 Terpenoid synthases superfamily protein; Swiss-Prot: sp|A2AIL4|NDUF6_MOUSE NADH dehydrogenase (ubiquinone) complex I, assembly factor 6; TrEMBL-Plants: tr|I1LWA3|I1LWA3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0426100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:92383307..92384227) extracted from Lotus japonicus Gifu genome v1.2.

CACTCACGTGAGGATTTAATGAATGGTGGTTCTGCATCTAGGAAAGCTTTCTCCCATTGTGTGCAACAAGTGAGAAATTA TGATTATCATCACTATCTTTGCCTTCTTGAACTGCCTCCATCTTTGCGGAAGGCTGCATTTGCACTCCGTGCCTTGAATG TTGAAACAGCTAGAGCAATGGATGTTGCTTCAGATCCCAGGATTGGACTTATGCGCCTTGTATGGTGGCAGGAAGCCATT GACAAAATGTTTGCCAATAAACTGATTGAACACCCAACAGCACAGGCCGTGTCATCTGTGATAGCTGAGACCAAAATCAG CAAGACATGGTTAAAACGATCTGTTGAAGCTCGGATTAATGATGCAAGAAGAGAGGTTACTGACATGCCAAAAGGTATGG AAGAGTTGGAGAAATATGCTGAGGACACTGTATCAACAATGCTGTACTTGACACTTCAAGCTGGTGGTATCAAGTCTACC GCAGCTGACCATGCAGCCTCACATGTTGGTAAGGCTAGTGGTATTCTTTTGCTCCTTAAATCACTGCCCTATCACGCCGG TCGCAACCGACATTTTTCCTACATACCAACTTCAGTAGCATCCAAGCATGGTCTATTAGTTAAAGAGGGAAATGGAGAAG AGAGGTGGGTGGATTCTCGCGAGGGCCTCTGTGACGCAGTTTATGAAATGGCATCAGTAGCCAATGCACACTTGCAGAAG GCTCGGAAGTTAGCAGAAAGTGTGCCTGCTGAGGCTCTTCCAGTGCTCCTGCCAGCAGTGCCTGCTCAGGTTCTGTTGGA TTCCCTAAGTCGGGTGCAGTTTGACGTGTTTGATCCAAGGCTAACGCGAGGGGTGCTAGGGATTCCACCTTTGTGGTACC AGCTTAAGCTTAAGTGGACTTCATGGAGAAGGAAATACTAA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0426100.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATGGTGGTTCTGCATCTAGGAAAGCTTTCTCCCATTGTGTGCAACAAGTGAGAAATTATGATTATCATCACTATCT TTGCCTTCTTGAACTGCCTCCATCTTTGCGGAAGGCTGCATTTGCACTCCGTGCCTTGAATGTTGAAACAGCTAGAGCAA TGGATGTTGCTTCAGATCCCAGGATTGGACTTATGCGCCTTGTATGGTGGCAGGAAGCCATTGACAAAATGTTTGCCAAT AAACTGATTGAACACCCAACAGCACAGGCCGTGTCATCTGTGATAGCTGAGACCAAAATCAGCAAGACATGGTTAAAACG ATCTGTTGAAGCTCGGATTAATGATGCAAGAAGAGAGGTTACTGACATGCCAAAAGGTATGGAAGAGTTGGAGAAATATG CTGAGGACACTGTATCAACAATGCTGTACTTGACACTTCAAGCTGGTGGTATCAAGTCTACCGCAGCTGACCATGCAGCC TCACATGTTGGTAAGGCTAGTGGTATTCTTTTGCTCCTTAAATCACTGCCCTATCACGCCGGTCGCAACCGACATTTTTC CTACATACCAACTTCAGTAGCATCCAAGCATGGTCTATTAGTTAAAGAGGGAAATGGAGAAGAGAGGTGGGTGGATTCTC GCGAGGGCCTCTGTGACGCAGTTTATGAAATGGCATCAGTAGCCAATGCACACTTGCAGAAGGCTCGGAAGTTAGCAGAA AGTGTGCCTGCTGAGGCTCTTCCAGTGCTCCTGCCAGCAGTGCCTGCTCAGGTTCTGTTGGATTCCCTAAGTCGGGTGCA GTTTGACGTGTTTGATCCAAGGCTAACGCGAGGGGTGCTAGGGATTCCACCTTTGTGGTACCAGCTTAAGCTTAAGTGGA CTTCATGGAGAAGGAAATACTAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0426100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNGGSASRKAFSHCVQQVRNYDYHHYLCLLELPPSLRKAAFALRALNVETARAMDVASDPRIGLMRLVWWQEAIDKMFAN KLIEHPTAQAVSSVIAETKISKTWLKRSVEARINDARREVTDMPKGMEELEKYAEDTVSTMLYLTLQAGGIKSTAADHAA SHVGKASGILLLLKSLPYHAGRNRHFSYIPTSVASKHGLLVKEGNGEERWVDSREGLCDAVYEMASVANAHLQKARKLAE SVPAEALPVLLPAVPAQVLLDSLSRVQFDVFDPRLTRGVLGIPPLWYQLKLKWTSWRRKY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.10.600.10
3 271 269 1.1E-20
IPR008949
PANTHER
PTHR21181:SF13
5 300 296 2.7E-113 –
PANTHER
PTHR21181
5 300 296 2.7E-113 –
SUPERFAMILY
SSF48576
10 290 281 2.16E-48
IPR008949
Pfam
PF00494
18 275 258 8.4E-49 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0426100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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