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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0426600 |
| Transcript ID | LotjaGi2g1v0426600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calmodulin, putative; TAIR: AT1G12310.1 Calcium-binding EF-hand family protein; Swiss-Prot: sp|Q94AZ4|CML13_ARATH Probable calcium-binding protein CML13; TrEMBL-Plants: tr|A0A1J7I7M8|A0A1J7I7M8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0426600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92442508..92442951) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTAAGGATCTGAGCGATGACCAAGTTTCTTCTATGAAGGAAGCCTTCACACTCTTCGACACCGACGGCGACGGCAA GATCGCCCCCTCTGAGCTCGGAATCCTCATGCGTTCCCTCGGAGGAAACCCTACCCAAGCCCAGCTCAAATCCATCGTCG CCGAGGAGAATCTCACCTCCCCCTTCGATTTCCCTCGATTTCTGGATCTCATGGCCAAACACATGAAACCCGAGCCCTTC GATCGCCAGCTTCGTGACGCCTTCAAGGTCATCGACAAGGACTCCACCGGATTCGTCTCCGTCACCGAGCTCCGACACAT CCTCACCAGCATCGGCGAGAAGCTTGAGCCTGCTGAGTTTGATGAGTGGATCAGGGAGGTAGATGTTGGTTCTGATGGCA AGATCCGTTACGAGGATTTCATCGCCAGAATGGTCGCTAAGTAA
CDS sequence (LotjaGi2g1v0426600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAAGGATCTGAGCGATGACCAAGTTTCTTCTATGAAGGAAGCCTTCACACTCTTCGACACCGACGGCGACGGCAA GATCGCCCCCTCTGAGCTCGGAATCCTCATGCGTTCCCTCGGAGGAAACCCTACCCAAGCCCAGCTCAAATCCATCGTCG CCGAGGAGAATCTCACCTCCCCCTTCGATTTCCCTCGATTTCTGGATCTCATGGCCAAACACATGAAACCCGAGCCCTTC GATCGCCAGCTTCGTGACGCCTTCAAGGTCATCGACAAGGACTCCACCGGATTCGTCTCCGTCACCGAGCTCCGACACAT CCTCACCAGCATCGGCGAGAAGCTTGAGCCTGCTGAGTTTGATGAGTGGATCAGGGAGGTAGATGTTGGTTCTGATGGCA AGATCCGTTACGAGGATTTCATCGCCAGAATGGTCGCTAAGTAA
Protein sequence (LotjaGi2g1v0426600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKDLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIVAEENLTSPFDFPRFLDLMAKHMKPEPF DRQLRDAFKVIDKDSTGFVSVTELRHILTSIGEKLEPAEFDEWIREVDVGSDGKIRYEDFIARMVAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 79 | 77 | 5.7E-19 | – | |
| PANTHER | 4 | 147 | 144 | 1.7E-90 | – | |
| PANTHER | 4 | 147 | 144 | 1.7E-90 | – | |
| SUPERFAMILY | 5 | 144 | 140 | 2.56E-39 | ||
| ProSiteProfiles | 8 | 43 | 36 | 12.979 | ||
| SMART | 12 | 40 | 29 | 4.4E-5 | ||
| Pfam | 13 | 41 | 29 | 2.2E-7 | ||
| CDD | 14 | 55 | 42 | 6.01102E-8 | ||
| ProSitePatterns | 21 | 33 | 13 | - | ||
| ProSiteProfiles | 79 | 114 | 36 | 13.174 | ||
| Gene3D | 80 | 147 | 68 | 7.5E-20 | – | |
| Pfam | 82 | 144 | 63 | 2.6E-14 | ||
| CDD | 83 | 144 | 62 | 1.11927E-14 | ||
| SMART | 83 | 111 | 29 | 1.6E-4 | ||
| ProSitePatterns | 92 | 104 | 13 | - | ||
| ProSiteProfiles | 115 | 147 | 33 | 9.66 | ||
| SMART | 119 | 147 | 29 | 0.067 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi2g1v0426600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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