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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0427800 |
| Transcript ID | LotjaGi2g1v0427800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Bifunctional uridylyltransferase/uridylyl-removing enzyme; TAIR: AT1G12420.1 ACT domain repeat 8; Swiss-Prot: sp|Q9LNA5|ACR8_ARATH ACT domain-containing protein ACR8; TrEMBL-Plants: tr|G7KG51|G7KG51_MEDTR Translation factor EF-1 alpha-like protein; Found in the gene: LotjaGi2g1v0427800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92501448..92503204) extracted from Lotus japonicus Gifu genome v1.2.
TTTCAATCCGACATTTCAAACGTGAATTGGGGAAAAGTAATCTCACTGACTTTGACTTTTACAGGGTTGTCATTGACAAT GCTGTTTGCTCCACAGCGACAGTGGTCAAGGTTGATAGTGCTAGAAGACATGGTATTCTATTAGATGCTGTACAAATTCT CACTGATCTCAATCTTTCAATTAAGAAGGCCTATATTTCCTCTGATGGCAAATGGTTCATGGATGGTAAGCTAATCTTCA TTTTCCCTTTTCACCAATCAACTTCATTCCCAGTGAAATGAGTAACAATTCCTTAAACACTAACCTTTGCCTATTCAATG GACAGTTTTTCATGTCACTGATCAAAACGGAAACATGCTAACTGATGAGAGCGTTTTAAAATACATTGAACAGGTATTCC ATTGCTTCTTCACAGTTATAAATTATTTATTTTCCCTGTGGTTACAATTAATTACGAGTTCTGATTCTTAGTTTTCGGTT TTATGTTATAACAGTCACTTGGGACCATTCATTATGCGAGAACCAATTGCTCAAATGGTCTCACTGCCCTGGAATTAACT GGAACGGATAGAGTTGGTCTTCTATCTGAGGTTTTTGCTGTGCTGGCTGATCTTCAATGTGATGTTGTTGAGGCTAAGGT TTGGACGCACAATGGCCGCATTGCCTCTTTAATCTATGTAAAGGACTGTGATTCTGGTTCCACTATTGAGGATTCCCAGA GAATTAACAACATTGAAGTGCGTTTAAGAAGTGTTTTGAAGGGAGACAATGACATTAGAAGTGCAAAAACTTCTGTCTCT TTGTCTGTCATGCACACGGAAAGAAGGCTTCACCAGATGATGTTCGCAGACCGTGATTACGAGAGGACCCCCATTCTCAA GTTTACCTCTGATAATGCTGTAGTGAATGTCCAAAATTGGGCTGAGAGGGGTTACTCAGTTGTCAATGTTCAATGCAAGG ATCGATCCAAGCTATTGTTTGATGTGTTATGCAATTTGACAGACATGGAGTATATTGTATTTCATGCTACTATAAACACC AATGATGGACGAGCATACTTGGTAATTATTCAACCTCCTTAGTCCTTCCATGAAATGTAGTAGTATTTTTCTTTTACTTG CTTGGTTTATGCTGTAAACTAACTTTCTTTTTTCAATTTCTGATCTCAGGAGTTTTATATAAGACACAAGGATGGCACAC CAATAAGCTCAGAACCCGAGCGTCATCGTGTGATTCAATGCTTAAAAGCTTCTGTGGAGAGAAGGGCATCTCAGGTATAA GCTTCCTTCATAGCATGTTTGGATCAATTTGTTTTTTCTATGAATCAAGTTTGACACTGAGAAGCTACTTATGAAGTGAC CGAGACTAATCAATTGTTAATTGTTTGGTTATAGGGTGTTCGATTAGAGTTATGCACAGAAGACAAGCAAGGGCTTCTAG CAGAAGTGATGAGAACTTTCCGAGAGAATGGGCTGAATGTGACTCGGGCTGAGATATCCACTGAAGGGAAAGTGGCTACT AATGAGTTCTATGTAACGGATGCGATTGGAAACATTGTTGACCAAAAAGTAATCGAATCTGTTAGGCAGAGAATTGGGTC AAGCAATTTGGAAGTGAAAGAGGTACCGTTGATGTATCATCACAAGGCGGAGAGAGAGGATGATACAGTTGGAGTTGGTG GGGCAGTGTTGTGGTCTATTGGGAGCCTTGTGAGAAGGAATCTGATCAATTTGGGGCTGATCAAATCATGTTCTTAA
CDS sequence (LotjaGi2g1v0427800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGTTTTTCATGTCACTGATCAAAACGGAAACATGCTAACTGATGAGAGCGTTTTAAAATACATTGAACAGTCACT TGGGACCATTCATTATGCGAGAACCAATTGCTCAAATGGTCTCACTGCCCTGGAATTAACTGGAACGGATAGAGTTGGTC TTCTATCTGAGGTTTTTGCTGTGCTGGCTGATCTTCAATGTGATGTTGTTGAGGCTAAGGTTTGGACGCACAATGGCCGC ATTGCCTCTTTAATCTATGTAAAGGACTGTGATTCTGGTTCCACTATTGAGGATTCCCAGAGAATTAACAACATTGAAGT GCGTTTAAGAAGTGTTTTGAAGGGAGACAATGACATTAGAAGTGCAAAAACTTCTGTCTCTTTGTCTGTCATGCACACGG AAAGAAGGCTTCACCAGATGATGTTCGCAGACCGTGATTACGAGAGGACCCCCATTCTCAAGTTTACCTCTGATAATGCT GTAGTGAATGTCCAAAATTGGGCTGAGAGGGGTTACTCAGTTGTCAATGTTCAATGCAAGGATCGATCCAAGCTATTGTT TGATGTGTTATGCAATTTGACAGACATGGAGTATATTGTATTTCATGCTACTATAAACACCAATGATGGACGAGCATACT TGGAGTTTTATATAAGACACAAGGATGGCACACCAATAAGCTCAGAACCCGAGCGTCATCGTGTGATTCAATGCTTAAAA GCTTCTGTGGAGAGAAGGGCATCTCAGGGTGTTCGATTAGAGTTATGCACAGAAGACAAGCAAGGGCTTCTAGCAGAAGT GATGAGAACTTTCCGAGAGAATGGGCTGAATGTGACTCGGGCTGAGATATCCACTGAAGGGAAAGTGGCTACTAATGAGT TCTATGTAACGGATGCGATTGGAAACATTGTTGACCAAAAAGTAATCGAATCTGTTAGGCAGAGAATTGGGTCAAGCAAT TTGGAAGTGAAAGAGGTACCGTTGATGTATCATCACAAGGCGGAGAGAGAGGATGATACAGTTGGAGTTGGTGGGGCAGT GTTGTGGTCTATTGGGAGCCTTGTGAGAAGGAATCTGATCAATTTGGGGCTGATCAAATCATGTTCTTAA
Protein sequence (LotjaGi2g1v0427800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVFHVTDQNGNMLTDESVLKYIEQSLGTIHYARTNCSNGLTALELTGTDRVGLLSEVFAVLADLQCDVVEAKVWTHNGR IASLIYVKDCDSGSTIEDSQRINNIEVRLRSVLKGDNDIRSAKTSVSLSVMHTERRLHQMMFADRDYERTPILKFTSDNA VVNVQNWAERGYSVVNVQCKDRSKLLFDVLCNLTDMEYIVFHATINTNDGRAYLEFYIRHKDGTPISSEPERHRVIQCLK ASVERRASQGVRLELCTEDKQGLLAEVMRTFRENGLNVTRAEISTEGKVATNEFYVTDAIGNIVDQKVIESVRQRIGSSN LEVKEVPLMYHHKAEREDDTVGVGGAVLWSIGSLVRRNLINLGLIKSCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 367 | 367 | 6.8E-224 | ||
| PANTHER | 1 | 367 | 367 | 6.8E-224 | – | |
| SUPERFAMILY | 39 | 109 | 71 | 1.31E-11 | – | |
| Gene3D | 41 | 124 | 84 | 5.9E-8 | – | |
| ProSiteProfiles | 43 | 127 | 85 | 11.35 | ||
| Pfam | 44 | 96 | 53 | 5.5E-7 | ||
| CDD | 172 | 246 | 75 | 7.50463E-37 | – | |
| ProSiteProfiles | 174 | 248 | 75 | 7.541 | ||
| SUPERFAMILY | 248 | 318 | 71 | 9.49E-11 | – | |
| Gene3D | 251 | 336 | 86 | 8.8E-9 | – | |
| ProSiteProfiles | 252 | 331 | 80 | 13.813 | ||
| Pfam | 253 | 315 | 63 | 1.6E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0427800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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