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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0427900 |
| Transcript ID | LotjaGi2g1v0427900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent Clp protease; TAIR: AT4G12060.1 Double Clp-N motif protein; Swiss-Prot: sp|Q8GW78|CLPT2_ARATH ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic; TrEMBL-Plants: tr|I3SMJ9|I3SMJ9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0427900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92507781..92515259) extracted from Lotus japonicus Gifu genome v1.2.
TCCAACGTGCATCGACATGTTCCCACGAAATTAATTTACAATTAATCCAACCCCTCCAATCACAATATTTAATTCCTTCC AAATCTTTGCTTGCTTTATTTTCCCCTATACATTTCCCTGAATTAAGCCAGTTTTGATTTCGTGCCTATAAAACAATGTG CTCATTCGCTGTGAGTTTTATCACTTACGCCACTCCTCACTCATCAATGAGCAATCTCTCATCCTTGGATAAAGATGTTT GTTGAAGCAACTACTATTGGAAAAATATTATTAACACTTATTTTAAGTTTGTGTTTGCAAAATTCAGATGAATCCACATC TAGTGGAATCATTAAATTAAATAGTTGTTTTTAGAAAGTTAGATCTACAATGTTAAAATTGAAACCAAACATTAACATCT TTTCACAATGCACATCATTTATTTGTTGAAATCCATGAGTATACTAAAAATATGTAACTCACTCTCAATGAACTCACATA AATTTAAGAGTGATAAAAAAAAGAATGTCTTGGGATATTGATAGCACTCCTCCTAGTCCCCTACTACCATTACTAGTATT AATAGCTTGAGCAGAGACTTTTGTTAGACGATTCTGTCATGACGACGATTTGCGCTTAGATGTAGAGTTGCGAGTCAACA TGACTAGCTGCAGCAGCGATGCTCAAAGAGAGGCTCATTTATTGAATTCCATCATCGGAGGTTGGTATAAACTATGATGG GAGTGAGGGTGATTCCCCGCGGCAGGATGGCTTCGGTGGTTGTCTTCGCAACAGTCTTGAGGAATGTATAATTAGTTTCA TGAGAGTTGGTTGTGGAGATTACATTATTCACATGGAGCTTTGGACCATCTTTCATAGCCAACGCGTGGCTTGGGATCAG GGCTTTTGTTTGCTACTTGGATCCCCTTTGAGTGTCTTTGATTGGGACCTTTTATAGATCTTCACGTGTATGCAGTTCTT ATTGCTAATATTAGGGACTTGTTTGGTAGGCAGTTAATTCTTGGCTTGCCCTCCGACTAATCTCACTCCTCTTCTCTTGG CTGATGCTATAAAGACTTGTTTTTCCAGCATAGTTGTCGTGTGTTTTGTGCTTTTATTTTTCGTTTTATTATCGTCTTGT AAAAAAAGAGAAGCATATAGTATGCTTCCTTTCTTCTTTTTAATTTTTTCGGTTCAAATAACCTGCCTTCCTATTCGTCA AGAAAACGAGAGAAGGCTTATCATCAAACTTTGCAACCTAACTAGCACCAGAAATTTTAAAGGCTATATATAATAAGCCC ATTTCCTAAATGACCCCAAAAAGCCCACTCCAATACGTCGTCGTTGTTCTCCCGGTTAAAACACTATCCAACTCCCAATC CCAAGTCCCGTGAAAAACTGAAAATGGCTTCTGCGCAATCCCATTGCGCTTCCTCCTTGAGTCTCATACGACGCTCGGAG CCTTCACCTCATTTGGCCAAGATTGTGTTGGTAAAATGCCCTAACAATTCATGGCTTGGAACCAAAATTCTCACCGTGAA ACCTCAGCTTTCCGTTTGCAACCGCCGCCCCTTCGCTGCCACCGTCTCCTTCAGTCTCCCCACAGCGTAAGCTTCTTCTT CTGTTTCCAAATTGGACGTTGATTTTAGGGTTTCGGAATTCATGTGATTTTGTCTCTGCAGGAATCCATCGCGTGCTGAT TCTCCAGGTGCGGAAATTCCCAAGTGAGTATCGCGCAAATCTACTTTCCCTTTTCGTTTTCAGTTGTCATTGCTTCGTTG CTGATTGTAGTGTTTCGTGAAAGGAAGATGGTCTTCTAAGGCTATAAAATCGTTTGCAATGGGGGAGTTGGAGGCTAGGA AACTCAAGTATCCAACTACCGGCACTGAAGCCCTTCTCATGGGGGTTCTTATCGAGGGTAACTCATTTGCTTCATTGCAA TCTCCTTAAAATTCTCTCATCTTAATGTTCTTTGCATAGGAACTTAGCTCAACACAATAGGAACATTCCCTGATAATTGA TATAGTGGATTTTAGATGTATTTAGCTAATGACCATGAATGTACTTTTACCATTTTCATTAATGTTGATTCTTAAATTCA GTCATTTAATCTCATGAACTTATATTTTCCTCATGAACTTCTTAAGTTTGACCAGAACACACGTTTGGAATTGATTCCTT CTCCTAACCAATGATTCGAGGCAACAAAAAATTTGTTTCTCATTGGGGGAAGATGGAAAACTTAATACTAAAAGCTGCAA TTTAAGAGTAAAATTACTTTGAGGTTCAAGTTATGCCTTTATTATGTTTGGGATGGTTTTAATGATACAAGTCCCATGTG TGATGTGTTGTTATCCCATGTCTTTGCACTGAAACTTTTGGATATCTAAGTTTTAGCAGTGTGCCTAATCTATGTTTTGG CTCTAGGTACTAATGTAGCTGCTAAATTCTTGCGTGCCAATGGAGTTACACTTTTTAAGGTGCGAGATGAAACCGTGAAG TTACTTGGAAAAGCTGATATGTTTTTCTTCAGCCCTGAGCATCCTCGACTCACTGATGAAGCTCAGAAGGCCCTTGATTG GGCTGTTGATACAAAATTACAATCTGGTTTGTTATCTTTTTCTCTTATCTTTTACTTTTCTTTATCACCAATTACAGAAG GGTAAAGAGCTTCTTGCATAATCTATAGGGCTTTATGCTAATGGTCTAAATTCTCTTCGATATTTTTTTCTACGACTCTG CTCTTGTTCTCTCCAGCTCTTTTAAGTAGCGTTAAGCCGTTAACATACACAAAATTTGACCTTTTTTTATATTGAATGAT ACGATGTAGTTTTTATCTTAAACTAAGCCACCAGCCATTGTTAATATGCATGGAACCCGAGTTTGTATTGAAGATAGTAA AGTTTGCAAAAATATGCTCAATATGGGGAAAATGAAAACCAAATTTCTTCTAATCCTCCCATATGTTCAATCTTTTTTTA GTTCTTTTCTTATAATTCGCCCTCGGGATGATCAAACTCAAAGGAAATAGCCTCCTTGAAAAATGAGTTACTGTTGTTGC TTTTCATGCTTTCGGGATGTACCGTACCAGACCTGATACATCTATTCCTTGACAAGTTGTTTGGTTTAGGAGAGAAGAGA GAAAAAGAGAAGAGTGATGAGTTGAGATAAAGAGAGTAGATTTTATAGGTTATATGGTATGATAGAAGAGGAGAAAAAGA AGAGATGAATGATATAACACTCTCTCCTTTCATTTTGTTGAATAGAAAGTGAGAATTGAGAAGATTGCTTTTATGTGAAA TGACATTATTACCATAAATATATGAATATTTATAAATAAGTATGATAATGATAGAGGGATAAAATGGGAAAGTTGGTTTA ATTTTATACTCACTCATTTCTCTCCATCTTAGGCGAGACCCCAAAAAGGAACCCACCACCTATCTCTCTTATGCATACCA AACAAGGGTGACTAACTATCTTTCCCCTAACTCTCTCTCTCTCTTCAATTCACCCTCTACCAAACACAATGTGAGTAAAT ATATAGGATTCCAGAATTGCTGAATCAGTCATTTTATGTTTTTTTTTTTTGCTACATCGCTAGAGTGTCAATGAAAACTG ACTAATTCTCAAAAAAAAAAATGAACAACTGCGATGAAGGATCTGGATTCATTTCTTAATTTGAATATTTCTTCTTAGAA CACTTTTGATTTGACTGCATAAGTGAAATCACCACCCTACAACATGTTGCTGCTAGAGGGAAAAACTACATATAGTACCG GACCAATTATTTGGACGATACGTCCCATAATTTTTTAATAGTGTACAGATTGTTAGATCCAAACTTCATATTCGAAGCAG AAACAGATGTGGCCAAAACATATAAATATTGGCGTAGTTGATCGGTTCCACTGACTAGACTCTTAGAGTGATTTAGTTGA TGCAGATTGAAGTGGAGTGTGTGTTGTCCCTAGGACTTTCAGACCAAGAAGAGATTATTTTAAGCTGAATTATATATGAA AAATTATATTATAGCACATCTTGTTGGGAAATTTTATTGTCTAGATGTAGTCCTGCCAAAATAAATACATGTGGTCAAAG TTGTGGATGAGAGGTGCTATTTTATCTGAAACCCTGGTCACCGACTTTTTACTGCCCATAATCTTCTTTGCTTATTTCAT GAGTATTAATGACTTGTCTTTTGGTCCTGAAGTTTTTCTTGTACCATCTATTAGATGGTTTTTGTTACTTGGAATGGTCT TTTGTGATAATAGTTCGTATAATTATTAGTTGTCTAGTGATTTATTTTTCTTTTGTGGGGCAGAATTGTTCTCAATATGA CTAGAAATGACACTTTGGGGTAGCCATTGCTGATCTATACATTTTCCTAATGTGAAGTTAGAGAGTGGACCAATATTGAA GCAGTTCACCTGTAACGCACTATTAACAACCATTGATATAATAATTTTTTATTTGACGATCCTGAATCAACGACTATTAT TAGTGGATCATCGGTGGACTACTTCAAAATTGGTCCATCCTATAACTTCCCTTTCCTTTAAGTTCCTAGTATTTTCTCAT TCACTAATTCGGAGAATGTAGTGGTGCATGATTACCTTTTCTTCTGCAATTGATATTATTACAAAATGTTATTTGTTCAA GGCTAAAAAGATTAATCCTTTCTGTAAATCCATGTGACTTGCAGTTGATGGTGGGGAAATTACTACAGTGCACATCATTC TTGGCATTTGGTCTGAAGTGGATTCACCTGGTCACAAGATACTGTCCACCCTTGGCTTTAATGATGAAAAAGCTAAAGAG CTAGAGACCTCAATTTCTAAACCTGGATTTAAGGATGATTGATGTTTGCTGTAAATGTATGAGCAAGAGTTTTGCTTTGA GTGCATATTATTTATTCGAGCAATTGTTTGTACAATTGATAGATCAACAGGCTGTCCTGTTCAGCCTGTTGTTTCAACTA CACACATCTGATTTCCAAAATGTGCAATGCCCCCTGCCCACTGCCCCCTAACCAAAAAAGAAAAAGAAAAGAAACAAGCA AACTAACAAAAGCATCAAGCTAGTGATCTAAAATGACAGAGAACCACTAGGTTGCTTTTTAGTGATATTTAGGAATTTTC CCTGAGCACGGGCACGTTCATTGTGAGTATGACCTCACGTCTTGAATTGTTGTACATAGTTGTGCCGTGTTGTACTCGTC CTGGTCTTAAGTTCTTACTGTTTATCAATATGCATGAATTTGGGTAGGTAAAAATACATTTTCACCACACTTTTTATACT TCATGTTCACGGGCCTCCATTTGTTGTTCTAGTTCATATTTGGGAACTTCCTTCACATGCTCGTTGCTGGCTAGTGCTTG TGCCTTGGAAGCTTCTTCCTCCCAGTTTATTCTCGCAATGAATATCACTAATAGAGACAAACAGGTGACAATACCAGTAA TGAGTCCAATGAAGAGTCCAAAAAGCCCGAGATTGAGTTTGAAGGCAAAAACCACGCCCAGAGGCAGTGCCAGGAAGTAA AATCCACCTAGATTAGCATACATTCCCAACCAAGGCCGAGCGGTCCCACGAACTATGCCTCCACAGACTGCCAATGGAAA ATTGAACACTTCCACCAGAGCCATCAACAACATTGTCTTCTTCACTCCATTGATAATCCCTCTGTCATGGCTAAACAGAG GCCCCCAAATTCCCCTGGCAGCCACCATCACCAAGCTGCCAATGCAACCTAAGATAAGCCCCAATGCAAGAGACACACAC GCTGATCGGTAAGCGCGTCCAGCTTGGTTCGCGCCCAGCTCATTTGAGACCCGGGTGGAAACACAAGTGGCTAGCGACAG CATCACTGAGAAAAGCAAATAATCGAAGTTGAGCACAATGGCCAAAACCCCCACTGCTTGCTTTGCGTTTGCCAAGTGGC CAGTGAGCAGGACAAGAATCTCATAGCACCACCACTCCAGGCATGTGTTGAGGCAGCATGGTCCAGAAAGCTTGAGCAGC CTAGTCCAATCTGCAATGCTCTGTTCCCACCACCCTCCTTCCTTCCACATGCTACCCTTTCTATGCTCAAGAATCACAAC ATAAATGGCCAGCAAAACCATGACAATAAGATCAGTTATCCACACTGCCATGGAAATTCCCCTCAGACCCATGGTTTTGG AGAGCAGAATGTTAACAGGTATGTGGAAAACTAGTGCCACAGCTGAACTGAACATGGTGGGAAGAGTTATGCTTTGAGAG CTGAGGTATGCTTTTAAGGGACAGAAGAGTGAGGTGACAAACAAGTCAGGTATGAGAGAGAAAACAAAGGTTTTTGCCAC AGTTGCAATTTCTTCTTGCTGGCCAAAATGAATCAAGATTTTATCAACATTGAGCCACAGGAAAGTAATGGGAAGTGTTA GCAATAGCAACAACATGATTGTCATGAGAAGGGTCTTGTGAAGGAGGGTGGTGTTTTTAGCACCATGAGCCTGTCCGCAG ATGGGTTCCATGGCGCCGCAGAGACCATTTAAGACAGAGAAGCCGGTGACATTAGCAAAAGTGAAGCCGAGCGCACCGCC GGCTAAGCTGAGCTCCCCCAATCGACCCAAAAAGGCTGTTGTGATGGCGGTCTTGGCAAACCAAGCCAGGTTCATGGCCA CCATTGGAAGGGCTAGTCCTCGTTGAACTCTCAGCTCTAATATCACCATGTTCAGTAAATTTGCAGGACATGTTTGAGTT TGCAGAGGCAGAGAAGGTGAAGATGGTTGTTGGCTAATTTTCTGGTTTGAGCTAAGGTTCTCTTCTAGTTTAGATGTTGG TGGCATTTTTTTTTTGCTGAACTGGTAATGTCTTGGTTGGTCACATTGATTGGTGGGATTGAATTCACTTCACTTAAGTA TTCTTGTTTGCTTTCCCTTCGTGGCTGAGGTTGGATGCAGGAGTTTCGTGAGGGAATTGTAGTAGTTTTTTTAATTGAAA GGAGGAAGAGAACCAGGCTTTTTGGCTGCCAATAGAAGAAGCGGTTGTTGGTTTAACATTTATAGTGCGTGATGAGGCAT GGCATAGACTAGTGAGAGACTATAGAACGCACTTCGGTTATTGCAAGAGAACCACGCGTTGAGTACAAGATTTTGCTATA GAAGAATAACTAGTGTACAAACACAATAAAATCAAGTACTTAAAAATATGAAAAATATTTTTAAATAGTTATTATCTATA ACTATTTTCTAAGTGTAAACCAAAGAACCCTTAGAGGAACCAAAAGCCTATTTTATTTTATTTTTATATTAAACGGGTTT TGTTGGAGACACTGACTAAAATGCATTTAAATGGTTAGTGCAATTTTTTTCCTTCTTTAACCATGTAGCTGTCATGTATA TTTTGCTTCTTTTTTTTTTCCCCTGTTTTCTGCAACTGTTGCTCTTAGCTGAGTTAGCTAAGTAGCTTGGTTGCTTGTTC TGCTTTTCTAATTTGTATTCGGGTTTAGCACCCCTTGTG
CDS sequence (LotjaGi2g1v0427900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTGCGCAATCCCATTGCGCTTCCTCCTTGAGTCTCATACGACGCTCGGAGCCTTCACCTCATTTGGCCAAGAT TGTGTTGGTAAAATGCCCTAACAATTCATGGCTTGGAACCAAAATTCTCACCGTGAAACCTCAGCTTTCCGTTTGCAACC GCCGCCCCTTCGCTGCCACCGTCTCCTTCAGTCTCCCCACAGCGAATCCATCGCGTGCTGATTCTCCAGGTGCGGAAATT CCCAAATGGTCTTCTAAGGCTATAAAATCGTTTGCAATGGGGGAGTTGGAGGCTAGGAAACTCAAGTATCCAACTACCGG CACTGAAGCCCTTCTCATGGGGGTTCTTATCGAGGGTACTAATGTAGCTGCTAAATTCTTGCGTGCCAATGGAGTTACAC TTTTTAAGGTGCGAGATGAAACCGTGAAGTTACTTGGAAAAGCTGATATGTTTTTCTTCAGCCCTGAGCATCCTCGACTC ACTGATGAAGCTCAGAAGGCCCTTGATTGGGCTGTTGATACAAAATTACAATCTGTTGATGGTGGGGAAATTACTACAGT GCACATCATTCTTGGCATTTGGTCTGAAGTGGATTCACCTGGTCACAAGATACTGTCCACCCTTGGCTTTAATGATGAAA AAGCTAAAGAGCTAGAGACCTCAATTTCTAAACCTGGATTTAAGGATGATTGA
Protein sequence (LotjaGi2g1v0427900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASAQSHCASSLSLIRRSEPSPHLAKIVLVKCPNNSWLGTKILTVKPQLSVCNRRPFAATVSFSLPTANPSRADSPGAEI PKWSSKAIKSFAMGELEARKLKYPTTGTEALLMGVLIEGTNVAAKFLRANGVTLFKVRDETVKLLGKADMFFFSPEHPRL TDEAQKALDWAVDTKLQSVDGGEITTVHIILGIWSEVDSPGHKILSTLGFNDEKAKELETSISKPGFKDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 230 | 219 | 9.1E-106 | – | |
| PANTHER | 12 | 230 | 219 | 9.1E-106 | – | |
| ProSiteProfiles | 80 | 225 | 146 | 26.984 | – | |
| Gene3D | 82 | 230 | 149 | 6.5E-34 | ||
| SUPERFAMILY | 82 | 215 | 134 | 5.76E-10 | ||
| Pfam | 97 | 146 | 50 | 3.1E-8 | ||
| Pfam | 183 | 222 | 40 | 3.0E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein metabolic process | The chemical reactions and pathways involving a protein. Includes protein modification. |
Expression pattern of LotjaGi2g1v0427900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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