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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0428700 |
| Transcript ID | LotjaGi2g1v0428700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TVP38/TMEM64 family membrane protein; TAIR: AT1G12450.1 SNARE associated Golgi protein family; Swiss-Prot: sp|Q55909|Y305_SYNY3 TVP38/TMEM64 family membrane protein slr0305; TrEMBL-Plants: tr|A0A0B2SEL7|A0A0B2SEL7_GLYSO TVP38/TMEM64 family membrane protein; Found in the gene: LotjaGi2g1v0428700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92609932..92613863) extracted from Lotus japonicus Gifu genome v1.2.
TTTAGATATTTTATTCTCATAAAAATTTAGATATTTATTAATGGTTGAGTTGAGTCTCCAATCGGTTGATTATTTCGCGG GCATCGACGGTTGTTCTGTTATTCTGAATCACGAATCTCTACAAACGGTTCCCGAGCCTAAAACTGTGCTTATCTTCGCA TCGATTTCCCCTGCCGGTGGCGGTGAGCCCGCCGTTCAAACCCGATGACGTATTTGGAGGGGAATGACGGTGGTCGCTCA AGGGAGGGCGATGGTGACTACGTTAAATTACGGTGGGGAACTCAAGATTCTCAATCGGAGGTCGCACTTCCTTCTCCGCC ACCGCGAGGTGCTGCGAAGCTATGGTTTTGGGTTAAATTGGTGGCGTCTTTCCTATGTCTAGGGCTATTGGCTTTCATTG TTTTCCAATGGGTTGGACCCTTTTTTATAGAAAAGGTTTTCACACTTTTTCCCTTCATTCTCCAAATCACCACTTACATT GATTGCTTGACCTAATTGTGTTTTAGGGCTTGTTTTTCCTTCTTAGAAATTTCAATTTTCATGAACAAGTCATGCATAGA TAGGTTATATATAGATTGCTTGCAGGCAAATGATTGTTTGAAAAGTGAATAATTGTGTTTTAATTATAATGTTGAATCAC TTATGTCACTGATGATGTATGTACATTACTCTTATTTTTAGGTGATTATTCCAATAACAAATTGGGAGAGGAACAGATTC AGTCCTTCGGAGTTAGCGGTTATGTTGTTTGGTTCTATAGCACTATTTCCTACCTTGCTTTTGCCCTCTTCACCTTCCAT GTGGATGGCTGGAATGCTATTTGGTTATGTTTTAGGATTCATGCTAATAATTTCTGCAGCTGCTGTGGGAGTATCCCTCC CCTTTTTCATTGGTTCAATCTTCCATCGCAAAATCGAAGTAAGTACATGTCTTCAGTGTTCGCATCTGTGTTCATGTGTT TACCTCACCTGTGCTAATTAGGATATTACTCATGATTCTTTGCAGGGGTGGTTAGAAAAGTATCCAAAGAAAGCTTCTGT TTTAAGATTTGCCGGTGAAGGAAATTGGTTTCATCAGTTTCAAGCAATTACTTTAATAAGGATTTCTCCATTCCCGTATA TTCTCTTCAACTATTGTGCCGTCGCAACAACTGTTAAGTATGGCCCTTACTTGTGCGGATCCTTGGTAGGAATGGTGCCA GAAGTACTTGTTTCACTCTATACGTAGGGTCTCCCTCTCTAATATACTTGGTTATACTAGGAGCTTGCTTTTGGTTTGCT ATAGCTATTTGAATACTTGGATTACTTATCATATATGTATTACTTGTATGTAAAATAAATGTATTACTTGTATGTAGATG TAGAAGTTTTCATGTACATCAAAAGGTATAGAGGGTAGCCATTAATGATGGCTAGCTATGCCTCCATCATGAGTATATTT TGAACAATATTGAGTGATAATTGTTTCATTAAGGTGTCATATGATGGCTTCTTGAATAAATTGATTAGTTGCATTTCGTC ATATTAGCTGTGTTACATATCTGATCTGATTAAGGTGAGACTAATATGTGACATGTGGAACTACTGTTCTGATAAACTTC TTTTGTTGAATTGTTATGGCTATGGACTATTGAATTCATTGGCTGCTTGATCCTCACCACCCACCAGCTGGATACAATAT TTTCTTATCTTTTTTATGTTGAAAATGTATACATACTTAGCAGCAATAAGACAATTCCTGTGTCAATTCTATGTTTGACA TTTTTTTCTTCTTATTTTCTCTCTGCCCTTTCAGGTCGTTTTTGAAAACTTATATCACCTGATCTGCAATACTATATATC TTAATTGTCATTTCTTTGCTTTGGTTTCATATATATATATATATATATATATATATATATATATATATATATATATCTCC ATCAAAAGCATTTTGTTAGTTAATAGTATTGATGATATCCCCTTCAGTGATGATCAATCCTAGTATATGACATGTATTTT CAAATGTTGGTTTGTTTGTAATTTTCACAAAGATAGGAACTAGTGATGCAAAATATCCTGTTGAATTTATTACCTCCTTG TCTTTCATTGTAGGGGAATTTTGATCCGAACGTTGGCCAATGCTTCACATAAAGAGCACACTATATCTGTCGTGCAAATT GTCCTCAATGTTGTTGGCTTGTGCATAACTGTAGCTACGGTATATTTTATCACAGTCTATGCTAAGAGGCGGCTCAAAGA GTTACAGAAAGGGGATGAGCTGCTATTGCAATAATCCTGTAGTTTTAGTCTGGGTTCATTGCTGACTGCATGAGGCTGCT TCCAATAACTCTCATATTGCCATATATTGATGAACACGACATAGCTGAGTGTGGTCTTCTAAGTAAGTAACCTCATCTCT GGGAGGGTTGACTGTCAAATGTTTTAAAGGGTGGTAATGGAACATGCTAACACCACTGAAATCCGCATTTTATTTATTTA TTTCAGTTTGTTGTCTACAGAAGTTGTGTTTCTTTTTTTGTGCTTTGATATCATTTGAATTTGTATATGAAGTAAAAGCA AAATTAATGCAGTACAGATTTCAAATTATTTCTTTTAATATGGACAGGAGGTAGTATATACAGAAAACATGATTGTATAA TTGGGGGGAGAAGCGCATCTTTGGAAACTTGTTCATCACGATGAAGTCAAATCTTTGATGGACAGAAGCAGCTTCTCTTA ACTTTGGCTTCTGCCCACCACAATTTTAGATTCACTGTTGTTTTCGAACGAGTTTCCTTTCTTTCTAGTAAAATTGCTTT GATCTTTTCCCCTTAATGATACCTTGTCACTTGTATCAATGTTTGAAGATTTATACATGTGCGAGCTTGTCATGATAGTT GTAATGAATATGGTAAAAATATCCAGGCCATTCATTCAAGGGGGATTTACTTTGCCAACTAAGGCATAGATTGGAACATT AAAATATATACGTCACTTCCTGTATAACCTAATTTACTGGAGAATGAAAGATCATGATCATGTTCTACAGTAAATAATAC TACTTACTATCTTACTTAAGTCAGTTGAACCAAATTTAACCATTAAAATTGGAAATAGAAATATAAAATAATCACTGAAT TCACTTTGATCATTATGTTTAGTTCCACTCTCTTGGTGTCTTAAAATTTTCCATGTAGTATAAGATATGTGATACACTTT GTATTGTTGCAGAGGGAGCACATATTGTTGTCCTCTGTCTCAGATCAGCGTCTCACAGCTCAGCAGAGAATTTAGTGTTT TGTTCTGCTTAACCTTTCTATCGTTGTATTCCCCGTTACTTAAGCCAATGTCTTGAACAATTGTCTCTATGTAATGAACA CTCTCATTCATAATGACATGAGCACACAGGTACATATTCGATTTCAATGCCACTACAAATGAACTGGGTCAGTTTGGCCC CTTATTTGTTTTCTTTTTTGGGGACATTGGTCAAGAATATAGGTGTACACTTTTGCTGGAGGTAGGGTCTACCAGGGTCC AGGAAGCTTATCTTGCCGTAACATTGCCATAACATTAATCATTATAGAGCACTTGATTAAATGAGATTAGATGAGATTAG CTTCGCTAATCACTTGATTTGTATAATCTTGAACTTAAGATCAGAGGGCAAAAACAAAAGGGAGTAGGGACCACTAGTGT GTAATATTAATATGCCAGCCATGACTTATTATTAGTAGTTAGATGGGGGTCCGTTAGATGGAATAGAAGAACACATTAAA TGAAAGCATTTCCAAACACGGCAGTGGATGAAACCGTGGCAAAAGGGGAAACCTTTTGAAGGACTGCGTTTATTTATTCA GTCACATGCTCGTGTTGTACGTGTCAATATGTCATTTGCAAAAGTTGTTCTTTTTTTATAGCAAAAGTTGTTCTTTTTAA TCGTTGATTAAG
CDS sequence (LotjaGi2g1v0428700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGTATTTGGAGGGGAATGACGGTGGTCGCTCAAGGGAGGGCGATGGTGACTACGTTAAATTACGGTGGGGAACTCA AGATTCTCAATCGGAGGTCGCACTTCCTTCTCCGCCACCGCGAGGTGCTGCGAAGCTATGGTTTTGGGTTAAATTGGTGG CGTCTTTCCTATGTCTAGGGCTATTGGCTTTCATTGTTTTCCAATGGGTTGGACCCTTTTTTATAGAAAAGGTGATTATT CCAATAACAAATTGGGAGAGGAACAGATTCAGTCCTTCGGAGTTAGCGGTTATGTTGTTTGGTTCTATAGCACTATTTCC TACCTTGCTTTTGCCCTCTTCACCTTCCATGTGGATGGCTGGAATGCTATTTGGTTATGTTTTAGGATTCATGCTAATAA TTTCTGCAGCTGCTGTGGGAGTATCCCTCCCCTTTTTCATTGGTTCAATCTTCCATCGCAAAATCGAAGGGTGGTTAGAA AAGTATCCAAAGAAAGCTTCTGTTTTAAGATTTGCCGGTGAAGGAAATTGGTTTCATCAGTTTCAAGCAATTACTTTAAT AAGGATTTCTCCATTCCCGTATATTCTCTTCAACTATTGTGCCGTCGCAACAACTGTTAAGTATGGCCCTTACTTGTGCG GATCCTTGGTAGGAATGGTGCCAGAAGTACTTGTTTCACTCTATACGGGAATTTTGATCCGAACGTTGGCCAATGCTTCA CATAAAGAGCACACTATATCTGTCGTGCAAATTGTCCTCAATGTTGTTGGCTTGTGCATAACTGTAGCTACGGTATATTT TATCACAGTCTATGCTAAGAGGCGGCTCAAAGAGTTACAGAAAGGGGATGAGCTGCTATTGCAATAA
Protein sequence (LotjaGi2g1v0428700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTYLEGNDGGRSREGDGDYVKLRWGTQDSQSEVALPSPPPRGAAKLWFWVKLVASFLCLGLLAFIVFQWVGPFFIEKVII PITNWERNRFSPSELAVMLFGSIALFPTLLLPSSPSMWMAGMLFGYVLGFMLIISAAAVGVSLPFFIGSIFHRKIEGWLE KYPKKASVLRFAGEGNWFHQFQAITLIRISPFPYILFNYCAVATTVKYGPYLCGSLVGMVPEVLVSLYTGILIRTLANAS HKEHTISVVQIVLNVVGLCITVATVYFITVYAKRRLKELQKGDELLLQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 45 | 45 | - | – | |
| PANTHER | 8 | 287 | 280 | 1.3E-142 | – | |
| PANTHER | 8 | 287 | 280 | 1.3E-142 | – | |
| Phobius | 46 | 75 | 30 | - | – | |
| TMHMM | 52 | 74 | 23 | - | – | |
| Phobius | 76 | 94 | 19 | - | – | |
| Phobius | 95 | 111 | 17 | - | – | |
| TMHMM | 95 | 114 | 20 | - | – | |
| Pfam | 111 | 231 | 121 | 2.7E-15 | ||
| Phobius | 112 | 122 | 11 | - | – | |
| Phobius | 123 | 151 | 29 | - | – | |
| TMHMM | 129 | 151 | 23 | - | – | |
| Phobius | 152 | 210 | 59 | - | – | |
| Phobius | 211 | 231 | 21 | - | – | |
| TMHMM | 211 | 233 | 23 | - | – | |
| Phobius | 232 | 250 | 19 | - | – | |
| TMHMM | 248 | 270 | 23 | - | – | |
| Phobius | 251 | 272 | 22 | - | – | |
| Phobius | 273 | 288 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0428700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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