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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0429500 |
| Transcript ID | LotjaGi2g1v0429500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PGR5-like protein 1A, chloroplastic; TAIR: AT4G22890.1 PGR5-LIKE A; Swiss-Prot: sp|Q8H112|PGL1A_ARATH PGR5-like protein 1A, chloroplastic; TrEMBL-Plants: tr|I3SI74|I3SI74_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0429500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92664801..92669452) extracted from Lotus japonicus Gifu genome v1.2.
TTTTGATATTCTCAGACAGTGAAAGCAAGATTAGTCCCTCCACACATTCATTGTTACCTTATCTTTGTACACTCTTTGTT TCCCTCCAAACAAAAATGACCCTGAATTTAATTCCCAAATGCATCCAATTTCACTTGATAGCACCACTACACAGTAATCA CCATCATTCATCACCACCATGGCTAGCAAATTAGCATCCACATTGACATACCAGCGTCCATTCACCGCCACAACACAACC AACATCCTCAATTTCTACTCCCCGGGCTCACCTTGTTCAATTTAATGGCCGCCGCAACGTATGCCTTCGCCGCCGCCGGC TACTCTTGCTCTCCCCCAAGGCCTCTGCTGATCAACAAGGTCTCAACACTATTGATCTTTTTTTCTTTCATTAATTCATT GCTCTGTTCTGCATGCTGAATTGTTGTTCTTCTCTTAATTTCAGGGAAGGTTGAGAAAGATGCTGTTGATAGTATAAAAG AGAAGAAATCAATAGGTGAACTTGAGCAAGATTTTCTTCAAGCACTGCAGGTATGGTCACATTTAATTTGATTATTTCAT CCTGTCTGTTATTATTTAATTTTAAGTTATAAGGATGAATTTTGAAATTGGTTGTTGAACAGGCATTCTACTATGAGGGA AAGGCTATTATGTCAAATGAGGAATTTGATAATCTCAAGGAAGAACTAATGTGGGAAGGGAGCAGTGTTGTAATGCTAAG TATGGAGCTGAAACAACTGTAATTAATGATACATGCATGATTTCCTGCTAATTAACTAAATTAATCTCTTTTTTCTATTG GTTAACTGCCTCTACAGGTTCTGATGAGCAAAAATTTCTTGAAGCAGCTATGGGTTATGTGTCTGGAAAACCAATCATGA GCGATAAAGAGTATGATGAATTGAAACTCAGGCTAAAGGTACTTAGGAATTGTATTTGAAATTGATTTATGAATTTCGTT ATGAGTATTTAATGTTTTGAAAAAAGATTATTGCATAAGATGTCTTTTAACATGATGTTGTATAAATAAATGTTATATTC TTGCTGTGTCTAGGGTCTAGCAGTGGTCAGTTATTTACTTATTTCATGGATGTTTCTAGATGGAAGGCAGTGAAATTGTA GCTGAGGGTCCACGGTGCAGTATTCGCAGTCGCAAGGTGCGCGTTACTACTCTAAAGTATACTTTGGTTGAGTAATTGGT GAGATTGGTAATAGGTGAAACTAGGAGATGATCGATAGGAAAGAAAAAAATGATGAGAAATTGAGAATGGTAATAGGTGA AAATAGGGTATATGTGAAACAAAATTAGATAAGTAGGATTTGATTTCTAAAACAATAAGGTTAAAAAACACTAAAACAAG TGGATGAAAAATGGAATTGATCTTGGCTGTTTAAAAATATCTAGTTGACATCCTTTTGCAGGTTTACAGTGACCTGTCTA TTGACTACTTGAAGATGTTCCTGCTAAACGTGCCAGCAACTGTGGTTGCCCTGGGATTGTAAGTAACTGTCTTTCCCTGT ATTGAATACGTAGTTCATGATGTTATTGGAGTTACTAGAAACTGTTAGGGTTAGATTGAAAGTTAGAACTGATTGATTGT AACCACAACTGTTTTCCCCTCCACTTCCTATAGTTAGTTAGGCCATACTGTCTAAGTGTCTATTAGTGAGTTAGTTAATG TTAGTAGCTATTAACTACTCAGTTGTAAACACTTTACACTTCACTTCTTCAATGAATCAATAATGAAAGAGTTTCATTAT CTGTTACTTTGATAGATGTATTTAATTTAGCTAAAATTTTGATTCCAGCAACCACTATTAGTTGGTCTGTACGATCCACA GGTTATACAAGGTGAAACCTGTTTGAAAAAATGTCATATTACCCTTGTGTGCATTTCGAAAGATTCGAGATCAAAATTAT GTTTACCTTTATTTCATATATTTGTATGTCCAAGGATTAAATAATGATTCACTTATTATAAGTAAGAACAAAAAAGGAGT CCCAGAAATTCCAAATGTTCAAAGTCGAGTTTTTACATGCCACTTCATCCATCATGACTCATGAGTGTCATTATCTAGCT GTTACTATTAATTCCATAATCTGTCATTTACATATGCAACTGTGCTAGCATTTGAAGACATCAGCACTGTTATGCCTTTG GGTAAACAACTTAGTGCTTTTCAAATAAGCGCTTATTTATTACCATATTTGATAAGCTTATTGGAATAAAGTCAAAATAT TTTATACATAGATATAACTGCTTATTCATAAGCTAATAGGGAGCTTAAAACAACTTATAGGGAGCTCGTAAATTGTTCTT ATAAGTTTAACCAAACACTTGTGTAAGTGCTTATATTATACGATAAGCTCAATTAAGTGATATCCCTTCGTCAATCTATG TTTGTATAGTTGTAGATTCCAATATACAGCTAGCTTCTGCTCCTTTCATTTTCTTTGGACTGCAAGCAAATGTGATTGTA CAATAGAAATTCAACATAGTTGAAAGGATTACTGGCCTGGAAATTCAAATCAATTTGTTGGACCAATAACATAACTGGTA AACTACACTACAGTTCCATCAGGGTCCAACAAATTTTTCCTTTACTTTTTCGTATTCCTCGTGATTCCCAGACTGCTTTT TGAAAATCACCTTGCCGAGTTTATGGTTGCTGATATCTAAATTTAGATTGAATTAAAACAGCTTATACCTGGTATCCTTT ATGAATGTGCATAGTTTCCTTGTGGTTAAAATTGGTCCTAGAATGTTGATATTGTTGATTCAGTTGTCTTCTGAAGGATG AAACAGCACTGCACTATCCACACTAATCTTATATCTCTTAAATATTGTAACATGTCCTAGTTATGTCATATGGCAATTCT AGATTTAAGATACTTTTAGTATTAGTATCATACTTTTTTTCTATCTTTTCTTAAATCAAAGGTTTTCATCCCAAATGATC AGAAAAAGTATGTGTTTCCTTTACCTCTGCATTTTACAGGGAGGTGTGGATGTTACCGTTTGCACAAGTTAGGTCATGAC TTTTTTGGTTTTTTACATTTTCCCCCTTACGATCTATTAGGTTCTTCTTCCTTGATGATGTGACTGGATTTGAGATCAAT TCTCTGATAGAGGTATGTTCTCCTCATTTGCTAACTGGTCAGGTTCTAATCTCATATTTTATAAAATTGAAAATAGTAAA TACTATTAATGATTATAACAGGTTCTGAAATGTGAATTGTTAACTGCAGATTCCAGAGCCTTATAGCTTCATTTTGACTT GGTTTGCAGCTGTCCCCTTCATTGTATGGCTGGCTCAGTCAATTACAAATGCCATTATAAATGACTTTCTGATTTTAAAG GTATCATTTTGGGGACTTTCTAGTTTAGTTTATATTGAATCAGTTGATTTGATATGCTAACATGGAATTTTTTAAAGGGC CCATGTCCTAACTGTGGCACTGAAAATACTTCCTTCTTTGGGACTATACTGTCAATTTCAAGTGGGAATTCTACCAACAA AGTCAAATGTGTTAAGTAAGTACATAAACATTCCTGCATTAACTAACCCCTGTCAGTCCATATTAACTAATATGACTTAT GATAGATCATTAGTATAACAATCCAAATTTATATGTTTCTTCAGCTGTGGTACTGCAATGGTGTATGATTCAAGTACAAG ATTGATTACATTGCCTGAAGGGAGTAATGCCTGAGTGGAGGTACATTCCTTGATTACTCTAGAATATTTCTACTATATCT GTTGTAGCATATGCATTTGGCATATGAGCTGCTCTTAATTTGTTTCTTTCCTGTGTGGAATAATCAATGTATCATGGAAA TGAGATCTATTCACGGTTGATTTTGACTTTTATTTTCCATATTCTGTAACGACATGCTGATCTGCATATTATATGTATCT CATTTTCATACATACAGGGACACACAGGCATGCTTTTGTCATATCATTGTTCCAACGTTGAGATGTGATCACCATCGGTG CAGAAGCTACTTAATTACATACGAAGCTAGTTACTAATTTATCAAGTCAGGAATCTGCCATGGTGATCCCCTAATTAATC AAGGCCAATATCACTATCATACTTGTAATCAAATGAGATTTGTATAGCATATTTAGGATTGTCCATTTTGATTGATTCCG ACCTGGAACTATCATAATAAGTCTGCAAAGATCTGTGCGTAAAATCTTTAGAAAGTCAGCTGAGGCCTTGCTTCAGTTGT TTGCTTATAGACTTCAAGGAAAATATGCAATACACTGTGGTTGAGCAGGGTGTATCAATGCATGCCGATTCTCATCTGCA AATGAATGTAATTGAAACTAAGAATTTTGTTTTTGGATCCAAACTAGGTTTCCACATTTGTGAAAAAATGTTTGATTATG ACAGCAACCTAAGACTTGTGCTGTATAGGAATGTCCAGGTGAAGCAGCTAAAATCATCCACTGTTGTGAGGAAAATCCTT TGACCCTTGGCATTCAGTAGCTAGGGTCCCTAAACAATTACATATATTGGAGATAACAAATAGTTTTAGGTTAACTGCCG TGGCCTAACACAACCCTTCTTCTCTAACCGGGCTTGAGACTGGATATACAAGCATCGGCGAAGTTTCCCTAAACATTAAC ATGAACCAAATT
CDS sequence (LotjaGi2g1v0429500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAGCAAATTAGCATCCACATTGACATACCAGCGTCCATTCACCGCCACAACACAACCAACATCCTCAATTTCTAC TCCCCGGGCTCACCTTGTTCAATTTAATGGCCGCCGCAACGTATGCCTTCGCCGCCGCCGGCTACTCTTGCTCTCCCCCA AGGCCTCTGCTGATCAACAAGGGAAGGTTGAGAAAGATGCTGTTGATAGTATAAAAGAGAAGAAATCAATAGGTGAACTT GAGCAAGATTTTCTTCAAGCACTGCAGGCATTCTACTATGAGGGAAAGGCTATTATGTCAAATGAGGAATTTGATAATCT CAAGGAAGAACTAATGTGGGAAGGGAGCAGTGTTGTAATGCTAAGTTCTGATGAGCAAAAATTTCTTGAAGCAGCTATGG GTTATGTGTCTGGAAAACCAATCATGAGCGATAAAGAGTATGATGAATTGAAACTCAGGCTAAAGATGGAAGGCAGTGAA ATTGTAGCTGAGGGTCCACGGTGCAGTATTCGCAGTCGCAAGGTTTACAGTGACCTGTCTATTGACTACTTGAAGATGTT CCTGCTAAACGTGCCAGCAACTGTGGTTGCCCTGGGATTGTTCTTCTTCCTTGATGATGTGACTGGATTTGAGATCAATT CTCTGATAGAGATTCCAGAGCCTTATAGCTTCATTTTGACTTGGTTTGCAGCTGTCCCCTTCATTGTATGGCTGGCTCAG TCAATTACAAATGCCATTATAAATGACTTTCTGATTTTAAAGGGCCCATGTCCTAACTGTGGCACTGAAAATACTTCCTT CTTTGGGACTATACTGTCAATTTCAAGTGGGAATTCTACCAACAAAGTCAAATGTGTTAACTGTGGTACTGCAATGGTGT ATGATTCAAGTACAAGATTGATTACATTGCCTGAAGGGAGTAATGCCTGA
Protein sequence (LotjaGi2g1v0429500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKLASTLTYQRPFTATTQPTSSISTPRAHLVQFNGRRNVCLRRRRLLLLSPKASADQQGKVEKDAVDSIKEKKSIGEL EQDFLQALQAFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQKFLEAAMGYVSGKPIMSDKEYDELKLRLKMEGSE IVAEGPRCSIRSRKVYSDLSIDYLKMFLLNVPATVVALGLFFFLDDVTGFEINSLIEIPEPYSFILTWFAAVPFIVWLAQ SITNAIINDFLILKGPCPNCGTENTSFFGTILSISSGNSTNKVKCVNCGTAMVYDSSTRLITLPEGSNA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 182 | 182 | - | – | |
| PANTHER | 1 | 308 | 308 | 7.7E-174 | – | |
| PANTHER | 1 | 308 | 308 | 7.7E-174 | ||
| Phobius | 183 | 204 | 22 | - | – | |
| TMHMM | 187 | 204 | 18 | - | – | |
| Phobius | 205 | 223 | 19 | - | – | |
| TMHMM | 224 | 246 | 23 | - | – | |
| Phobius | 224 | 247 | 24 | - | – | |
| Phobius | 248 | 309 | 62 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Chloroplast thylakoid membrane | The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. | ||
| Biological process | Photosynthetic electron transport in photosystem I | A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, X) through a chain of electron transport molecules in the thylakoid membrane until they reach ferredoxin which passes the electron to the ultimate electron acceptor; NADP. | ||
| Molecular function | Oxidoreductase activity, acting on iron-sulfur proteins as donors | Catalysis of an oxidation-reduction (redox) reaction in which an iron-sulfur protein acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. |
Expression pattern of LotjaGi2g1v0429500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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