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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0431200 |
| Transcript ID | LotjaGi2g1v0431200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dehydration-responsive element binding factor; TAIR: AT1G12610.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9LN86|DRE1F_ARATH Dehydration-responsive element-binding protein 1F; TrEMBL-Plants: tr|B3TPR9|B3TPR9_SOYBN CBF3 protein; Found in the gene: LotjaGi2g1v0431200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92806267..92807400) extracted from Lotus japonicus Gifu genome v1.2.
GGTCCAGCCAAAGCTATATAAACTCCACACACACTCACTTCCTCACTTAAATCAATACCATTCAGCAATCAATCACCTGA AAGAAACCAACAAGATCATCGAATTCCCCCATTCCAAACAGTAGTAATCTTCAATTCTCAATTGGATCATGAGCCTTTTC AATTCAACATTCGACGAGTTCAACTACGGCTACCAGTCGCCAGAAACAAGCTCCTACACCACCACCACCACCCGCAGCGA AGAGGAAGTGGTATTGGCATCGGCGCGGCCAAAGAAGCGAGCTGGGCGGCGAGTATTCAAGGAGACCAGGCACCCTGTAT ATAGAGGAGTGCGGCAGAGAAACTCCAACAAGTGGGTTTGCGAGATGCGAGTTCCTAACGACACTAAGAGGATCTGGCTC GGGACATTCCCGACACCCGAAATGGCGGCGAGGGCGCACGACGTCGCCGCGCTTGCTCTCCGAGGGCAATCAGCTTGCCT TAATTTTGCCGACTCCGCGTGGCTGCTCACGGTGCCGGCGTCAACCGATGCGGATGAGATAAGGAGGGCTGCGGTGGCGG CGGCTGAGTCATTCGCGCCTGGGAATGAGGTGATGGAAGATGCGAATCAAACTCTACAGCAGCAGCAACAAGAACAAGAA CAGGGGATGATGTACGGGGAAGAAGAGGTTGCGGCGGCGGTGCCGGAATTTGAAGACTTTCATGATTTGCTTATGAGCAT TGCGAATGGTCCATTGCTGTCTCCTCCACCTCCTGCAAGAGATGGTAGGGACTGGAATGACGTGGAGATGTTTGATGATG GAGTGTCACTGTGGAACTTTTGACCAATTTGGCACGTGGATGCCCTATATGTGAGTTATTGATTTTGAGATGCTGAAGTG TCTTTGGGATATTTTTTATGAAGGCCTTTTCAAAAAGTCTTTGATTATTTTCTAGCCCAAAATTAGTAGTTCTAGCTGTG TGCTTATCTTCCCATATTAGGAATGGAAGAAGTTATGTTTTGGACTTATCCTTAGCTCTATGAGTTAGCTTCTTAATTTT ATGTACAAGTTGATATTTTTCTATTAAGATAAAGAGGGCCAGAAAATTGGTTATCGCCTCATTTTATTTTATTCTTAGAT TATTTTAGCTTTTT
CDS sequence (LotjaGi2g1v0431200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCCTTTTCAATTCAACATTCGACGAGTTCAACTACGGCTACCAGTCGCCAGAAACAAGCTCCTACACCACCACCAC CACCCGCAGCGAAGAGGAAGTGGTATTGGCATCGGCGCGGCCAAAGAAGCGAGCTGGGCGGCGAGTATTCAAGGAGACCA GGCACCCTGTATATAGAGGAGTGCGGCAGAGAAACTCCAACAAGTGGGTTTGCGAGATGCGAGTTCCTAACGACACTAAG AGGATCTGGCTCGGGACATTCCCGACACCCGAAATGGCGGCGAGGGCGCACGACGTCGCCGCGCTTGCTCTCCGAGGGCA ATCAGCTTGCCTTAATTTTGCCGACTCCGCGTGGCTGCTCACGGTGCCGGCGTCAACCGATGCGGATGAGATAAGGAGGG CTGCGGTGGCGGCGGCTGAGTCATTCGCGCCTGGGAATGAGGTGATGGAAGATGCGAATCAAACTCTACAGCAGCAGCAA CAAGAACAAGAACAGGGGATGATGTACGGGGAAGAAGAGGTTGCGGCGGCGGTGCCGGAATTTGAAGACTTTCATGATTT GCTTATGAGCATTGCGAATGGTCCATTGCTGTCTCCTCCACCTCCTGCAAGAGATGGTAGGGACTGGAATGACGTGGAGA TGTTTGATGATGGAGTGTCACTGTGGAACTTTTGA
Protein sequence (LotjaGi2g1v0431200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLFNSTFDEFNYGYQSPETSSYTTTTTRSEEEVVLASARPKKRAGRRVFKETRHPVYRGVRQRNSNKWVCEMRVPNDTK RIWLGTFPTPEMAARAHDVAALALRGQSACLNFADSAWLLTVPASTDADEIRRAAVAAAESFAPGNEVMEDANQTLQQQQ QEQEQGMMYGEEEVAAAVPEFEDFHDLLMSIANGPLLSPPPPARDGRDWNDVEMFDDGVSLWNF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 224 | 224 | 3.3E-89 | – | |
| PANTHER | 1 | 224 | 224 | 3.3E-89 | – | |
| Pfam | 56 | 106 | 51 | 4.0E-13 | ||
| Gene3D | 57 | 115 | 59 | 2.4E-25 | ||
| SUPERFAMILY | 57 | 116 | 60 | 6.54E-21 | ||
| SMART | 57 | 120 | 64 | 4.8E-26 | ||
| ProSiteProfiles | 57 | 114 | 58 | 20.943 | ||
| PRINTS | 58 | 69 | 12 | 5.6E-8 | ||
| CDD | 58 | 116 | 59 | 4.40785E-29 | ||
| PRINTS | 80 | 96 | 17 | 5.6E-8 | ||
| Coils | 146 | 166 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0431200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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