Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0435300 |
| Transcript ID | LotjaGi2g1v0435300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GH3 family protein; TAIR: AT2G47750.1 putative indole-3-acetic acid-amido synthetase GH3.9; Swiss-Prot: sp|O82243|GH39_ARATH Putative indole-3-acetic acid-amido synthetase GH3.9; TrEMBL-Plants: tr|V7BDE0|V7BDE0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0435300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93183444..93186480) extracted from Lotus japonicus Gifu genome v1.2.
CTGTTTTTAAACATAACGTATTGTAATTGTTTACATAATTACATTCATAGATAATAGGCTTGTTTTTCCGATGGAGAAAA AAAATAGATAATGGGCTTAAATATGTTATATATCTATATATATGTGGGTACGAGGCTTTTCAAACCATGGAAAAGTAATT AGTTTGTGAGTTCTGTTACACTTTTGTCTCTTGTAGTTCTCTTTTTCAGTCTTTCTTTTCGTGAGCATCATGGACGGAAA GAAATTGGAGTACAAAGGTGAGGAAGCACTGAATGAGATTGAGAGGTTGACAAAGAATAGTGCTGAAATTCAGGAAAGCC TTTTAAAACAGATATTAAGTCAGAACAAGGAAACTGAGTATTTGAGTAAGTATATGAAGAAGGGAGATCATGTAACTGAT GACGTCATAGCAGAGTTTAAGCTTCATGTTCCAGTTATAAGTTATGAAGAGATCTTGCCATATATCCAGAGAATTACAAA TGGGGAAGATTTTTCTCTCATTACTGCTCAACCAATAACAGAGATGTTATGCAGGTACAGCTAGCTAGTGTGTGTGTATA TATATATATATATATATATATATATATATATATATATTCATTGCTCACTCGCTTGTGTTTGTATTAATTGAGTGTATTTG TTGAGAAGTTTCACATTAAATAGAAATTTATAAACTAAATAAGTGTTTGTAAAAGTTAGAACAACCTTAACTCTAACTAG TTTTTGGGTAGAGTTATACGTAGCTCAAATTCTAACACTCTCAAATCATTTGGTATATATGTACAGTTCAGGAACATCAG GTGGAGAGCCTAAAATGGTGCCATCAACTGCTGAATATCTTGATCGTCGTACCTTCATGTACAATCTTATCACGGCAATC ATGAATAAGTTAATATTAATCATGCTCTTAGTTAATTTCATTGATTTAAATAAACATTTCAATCTTACCATGATCATGAA TTAACTTGATCATCTTCAACTTCAGATATGTTCCTGGTCTTGACAAGGGCAAGGCAATGTATCTCAACTTTGTAAGGACA GAAATGCCCCCAACTCCTTGTGGCTTACCGGTTAGGACTGCATTGACAAGCTACTACAAGAGCAAGCACTTCCTGTGCCG CGCATGTGAGCCTTGGAATGATTTCACAAGCCCTGACCAAACCATTCTATGTGATGACATAAACCAAAGCATGTATTGCC AGCTTCTAGCTGGTTTGGTTAACCGCCACAATGTCCTAAGGCTTAGTACTGCATATGCCTCTGCATTTCTCAGAGCGATC TCCTTCCTTGAAAATAACTGGATGAGCCTCTGTGAGGACATGCGCAGTGGAAAGCTCAGTTCCTTTGTCACAGACCCTGG TTGTCGCGCCGGCATGTCCACGGTGCTTTCGTCCCCTGTCCCACATCTTGCAGATGAGATCGCTGAAATTTGTAGCCAAA AGTGTTGGAAGGGGATTCTCTGTCAGCTTTGGCCTAAGGCCAAGTACATAGAAACAGTGATCACTGGCTCCATGGCTCAA TATGTTCCTACACTGCAGTATTACAGTGATGAGAAATTGCCTTTGGTTTGCACTAGGTATTCTTCTTCTGAGTGTCACTT TGGGATCAACATAAAACCTTTGAGTGACCCTGCTGATGTTGCTTTTACATTGTTGCCTAACATGGGTTACTTTGAGTTCC TTCCTATTGGACATAATGAGACACTAATGATGGACTTTGAGGAGGAGCATGTTCCTAATGACAAGCTCGTAGATTTGGGG AATGTCAAGCTTGGTTGCTTTTATGAGATTGTGGTCACAACCTTTGCTGGTAAATTTTTAATCAGGAAAATGTTAGTTAA ACATATGTATAGTGTAACTGCATCTTATACATAGATTTTGCGACCGTTTTATGTTTTAAAATAATCACATCACATCTACA TATGTTAATAACAAAACGCTGAAAATATTCATAGGGGTTTGAAATCACCACAAGTTGCACATATGAAAAGTACGATTAGA GGTGATTTCAAACTCAAAATAACACTTAAAAAAGTTGCATTTTGGCCGTTCAATTGGGTATTGTTTATATTGTTGTCCAA TCAAAAACTCAACTAGCCACTATTTCAATATTTTATTAATGTGATTACCTTTTTAACTTCTCATTTTTAACTTCTCATTT TCAGTCCACGTGCCATGTTGTAATTTTGAGTAAGGTTTATTCCAGTAACATAACCCATTTATTATTATAGTGATATTCAT TTACCAATTTATTTTCTTCCTCTAACTTTACAATATTGTGTTCCCAATGATCAGGGCTATACCGATACCGTGTTGGTGAT GTACTTCAAGTGGTTGGGTTTTACAATAAAGCTCCACAATTTAGATTCATTTGTAGGAAAAATGTTGTGATCAGCATTGA CCATGACAAAACTAGTGAAGAGGATTTGCATAAGAGTGTCACTGCTGCCAATAAATTGTTAGAGTCTCATGATGCTCTAC TAGTGGAATACACTAGTTACTCTGATACTTCTTCATTGCCAGGACACTACGTATTGTACTGGGAAATTCTGTATTACGGT TCAAAAATAGAGTCACTTGATACAAATATTATTAAAGAATGTTGCATTGCGGTTGAAGAGCAACTAAACTATGTATATTG GCATTTGCGCAATGACGGGTCAATAGGACCACTTGAGATACGTGTGGTGGAGGCAGGAACATTTGATGCATTGATGGATT TCTTCATTAGCCAAGGGGCTTCAATTGGTCAATACAAAACACCAAGGTGCATTAAATCTAATAAAGCACTCAACTTGCTC GACTCCAAAGTTACTGCTTCCTTTTTCAGTCCTAGAGATCCCCAAAGAAGGATATAAGAAGGTGTGTTAAGTTAAAAAGG TTGATTAAGGTGTTGTTTGGAAGAATTTACTTGAGTTTATTTTATAACATATACACTTATGCAAGTGTTGTTCCTATTTG TAAGTTGTTTAATTTTGAGCTTATTTTCATAAGTTGATCAAATTGATCTATGAATAAAAGTTTATGATTACCTATAA
CDS sequence (LotjaGi2g1v0435300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGGAAAGAAATTGGAGTACAAAGGTGAGGAAGCACTGAATGAGATTGAGAGGTTGACAAAGAATAGTGCTGAAAT TCAGGAAAGCCTTTTAAAACAGATATTAAGTCAGAACAAGGAAACTGAGTATTTGAGTAAGTATATGAAGAAGGGAGATC ATGTAACTGATGACGTCATAGCAGAGTTTAAGCTTCATGTTCCAGTTATAAGTTATGAAGAGATCTTGCCATATATCCAG AGAATTACAAATGGGGAAGATTTTTCTCTCATTACTGCTCAACCAATAACAGAGATGTTATGCAGTTCAGGAACATCAGG TGGAGAGCCTAAAATGGTGCCATCAACTGCTGAATATCTTGATCGTCGTACCTTCATGTACAATCTTATCACGGCAATCA TGAATAAATATGTTCCTGGTCTTGACAAGGGCAAGGCAATGTATCTCAACTTTGTAAGGACAGAAATGCCCCCAACTCCT TGTGGCTTACCGGTTAGGACTGCATTGACAAGCTACTACAAGAGCAAGCACTTCCTGTGCCGCGCATGTGAGCCTTGGAA TGATTTCACAAGCCCTGACCAAACCATTCTATGTGATGACATAAACCAAAGCATGTATTGCCAGCTTCTAGCTGGTTTGG TTAACCGCCACAATGTCCTAAGGCTTAGTACTGCATATGCCTCTGCATTTCTCAGAGCGATCTCCTTCCTTGAAAATAAC TGGATGAGCCTCTGTGAGGACATGCGCAGTGGAAAGCTCAGTTCCTTTGTCACAGACCCTGGTTGTCGCGCCGGCATGTC CACGGTGCTTTCGTCCCCTGTCCCACATCTTGCAGATGAGATCGCTGAAATTTGTAGCCAAAAGTGTTGGAAGGGGATTC TCTGTCAGCTTTGGCCTAAGGCCAAGTACATAGAAACAGTGATCACTGGCTCCATGGCTCAATATGTTCCTACACTGCAG TATTACAGTGATGAGAAATTGCCTTTGGTTTGCACTAGGTATTCTTCTTCTGAGTGTCACTTTGGGATCAACATAAAACC TTTGAGTGACCCTGCTGATGTTGCTTTTACATTGTTGCCTAACATGGGTTACTTTGAGTTCCTTCCTATTGGACATAATG AGACACTAATGATGGACTTTGAGGAGGAGCATGTTCCTAATGACAAGCTCGTAGATTTGGGGAATGTCAAGCTTGGTTGC TTTTATGAGATTGTGGTCACAACCTTTGCTGGGCTATACCGATACCGTGTTGGTGATGTACTTCAAGTGGTTGGGTTTTA CAATAAAGCTCCACAATTTAGATTCATTTGTAGGAAAAATGTTGTGATCAGCATTGACCATGACAAAACTAGTGAAGAGG ATTTGCATAAGAGTGTCACTGCTGCCAATAAATTGTTAGAGTCTCATGATGCTCTACTAGTGGAATACACTAGTTACTCT GATACTTCTTCATTGCCAGGACACTACGTATTGTACTGGGAAATTCTGTATTACGGTTCAAAAATAGAGTCACTTGATAC AAATATTATTAAAGAATGTTGCATTGCGGTTGAAGAGCAACTAAACTATGTATATTGGCATTTGCGCAATGACGGGTCAA TAGGACCACTTGAGATACGTGTGGTGGAGGCAGGAACATTTGATGCATTGATGGATTTCTTCATTAGCCAAGGGGCTTCA ATTGGTCAATACAAAACACCAAGGTGCATTAAATCTAATAAAGCACTCAACTTGCTCGACTCCAAAGTTACTGCTTCCTT TTTCAGTCCTAGAGATCCCCAAAGAAGGATATAA
Protein sequence (LotjaGi2g1v0435300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGKKLEYKGEEALNEIERLTKNSAEIQESLLKQILSQNKETEYLSKYMKKGDHVTDDVIAEFKLHVPVISYEEILPYIQ RITNGEDFSLITAQPITEMLCSSGTSGGEPKMVPSTAEYLDRRTFMYNLITAIMNKYVPGLDKGKAMYLNFVRTEMPPTP CGLPVRTALTSYYKSKHFLCRACEPWNDFTSPDQTILCDDINQSMYCQLLAGLVNRHNVLRLSTAYASAFLRAISFLENN WMSLCEDMRSGKLSSFVTDPGCRAGMSTVLSSPVPHLADEIAEICSQKCWKGILCQLWPKAKYIETVITGSMAQYVPTLQ YYSDEKLPLVCTRYSSSECHFGINIKPLSDPADVAFTLLPNMGYFEFLPIGHNETLMMDFEEEHVPNDKLVDLGNVKLGC FYEIVVTTFAGLYRYRVGDVLQVVGFYNKAPQFRFICRKNVVISIDHDKTSEEDLHKSVTAANKLLESHDALLVEYTSYS DTSSLPGHYVLYWEILYYGSKIESLDTNIIKECCIAVEEQLNYVYWHLRNDGSIGPLEIRVVEAGTFDALMDFFISQGAS IGQYKTPRCIKSNKALNLLDSKVTASFFSPRDPQRRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 595 | 593 | 0.0 | – | |
| PANTHER | 3 | 595 | 593 | 0.0 | ||
| Coils | 10 | 30 | 21 | - | – | |
| Pfam | 16 | 573 | 558 | 1.4E-188 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0435300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…