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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0435600 |
Transcript ID | LotjaGi2g1v0435600.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | transferring glycosyl group transferase (DUF604); TAIR: AT4G23490.1 fringe-like protein (DUF604); Swiss-Prot: sp|Q694C5|ABC3G_ERYPA DNA dC->dU-editing enzyme APOBEC-3G; TrEMBL-Plants: tr|G7KC11|G7KC11_MEDTR Transferring glycosyl group transferase; Found in the gene: LotjaGi2g1v0435600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93224855..93225946) extracted from Lotus japonicus Gifu genome v1.2.
CTCCATGCTATTCTGCAAGCAATTCCACTGACAGCCCTTGGTTTATTGAAACAGTATGATGTGTATGGGAACCTGTTGGG CCTTCTTACATCTCATCCTGTGACTCCATTGGTTTCACTTCACCATCTTGATGTGGTTGAGCCGATCTTCCCCAATGTCA CTAGAGTAGAAGCACTTCAACGGCTTACCATACCAATGAGGCTCGACTCTGCAGGGCTCATTCAGCAATCCATCTGCTAT GACAAAAAAAATAGCTGGACAGTTTCAGTTTCATGGGGTTATGCTGTTCAGATATTTCGAGGCATATTTTCGCCCCGGGA GATAGAAATGCCTTCAAGAACATTCCTGAATTGGTATAGAAGAGCAGATTACACTGCATACGCATTCAACACACGCCCGG TTACCCGAAACCCATGTCAGAAGCCTTTTGTGTTTTACATGTCAAAGGCAAAACTCAATTCTACAATGCAGCAGACAGTG AGTGAATATGAAAGGCATCGCGTCCCTCATCCGGAATGTCGGTGGAAGATGGCTGATCCTTCTGCTCTTGACAAAGTTGT TGTATATAAGAAGCCAGACCCACATCTATGGGATAGAGTAAGTGCTTTTCACATCAATTTTCCTTACTATATAATGTGAG CCTACCACATATGCAAATGTCATTAATTAGTGATGACATATCATTAGCAAGTCTAACTAATGCCAGTGCTAAATTCTAGC CTGTTTTGAGTGTTTTTATGCTTCAAATCTTAATTTGCAAAAGCAAAACCTGATTGTGGTATCATTTGTTGAGAAATTAA TGTTTGACATTAAAACTGATTTGAACTAATTTGACATAGTTATAAGTTACTTGTTTTAGAGCAAAAGTTAGTTACCCAAA ACTCTGCATATAATAAGCATTGTATGAATGAGAAATGGTTACTCTTTTTTTTCACATATCATAATAGTTAATGTGGTTTG TTTTGGGTGTTTTGTTGATATATTTGGCAGGCTCCAAGGAGAAACTGTTGCAGAGTAATGAAGCCAAACAAGAAAGGAAC CATGGTGATAGATGTGGGTATATGTAGAGATGGTGAGGTAAGCGAAGCTTAG
CDS sequence (LotjaGi2g1v0435600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGCTCGACTCTGCAGGGCTCATTCAGCAATCCATCTGCTATGACAAAAAAAATAGCTGGACAGTTTCAGTTTCATG GGGTTATGCTGTTCAGATATTTCGAGGCATATTTTCGCCCCGGGAGATAGAAATGCCTTCAAGAACATTCCTGAATTGGT ATAGAAGAGCAGATTACACTGCATACGCATTCAACACACGCCCGGTTACCCGAAACCCATGTCAGAAGCCTTTTGTGTTT TACATGTCAAAGGCAAAACTCAATTCTACAATGCAGCAGACAGTGAGTGAATATGAAAGGCATCGCGTCCCTCATCCGGA ATGTCGGTGGAAGATGGCTGATCCTTCTGCTCTTGACAAAGTTGTTGTATATAAGAAGCCAGACCCACATCTATGGGATA GAGCTCCAAGGAGAAACTGTTGCAGAGTAATGAAGCCAAACAAGAAAGGAACCATGGTGATAGATGTGGGTATATGTAGA GATGGTGAGGTAAGCGAAGCTTAG
Protein sequence (LotjaGi2g1v0435600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLDSAGLIQQSICYDKKNSWTVSVSWGYAVQIFRGIFSPREIEMPSRTFLNWYRRADYTAYAFNTRPVTRNPCQKPFVF YMSKAKLNSTMQQTVSEYERHRVPHPECRWKMADPSALDKVVVYKKPDPHLWDRAPRRNCCRVMKPNKKGTMVIDVGICR DGEVSEA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 166 | 166 | 3.2E-108 | – | |
PANTHER | 1 | 166 | 166 | 3.2E-108 | – | |
Pfam | 1 | 141 | 141 | 1.2E-48 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0435600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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