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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006740
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 32 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.423s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0064639.1
n.a. Uncharacterized protein TCM_005286 [Theobroma cacao] gi|508704000|gb|EOX95896.1| chr0 22393166 22397549 -
2 domain predictions
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Lj0g3v0064649.1
n.a. Beta-1,3-glucosyltransferase [Theobroma cacao] gi|508777574|gb|EOY24830.1| chr0 22395008 22397575 -
2 domain predictions
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Lj0g3v0270989.1
n.a. Beta-1,3-glucosyltransferase [Theobroma cacao] gi|508777574|gb|EOY24830.1| chr0 140359244 140365479 -
2 domain predictions
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Lj0g3v0270989.2
n.a. Beta-1,3-glucosyltransferase [Theobroma cacao] gi|508777574|gb|EOY24830.1| chr0 140361444 140364646 -
2 domain predictions
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Lj0g3v0311539.1
n.a. Uncharacterized protein TCM_021877 [Theobroma cacao] gi|508715549|gb|EOY07446.1| chr0 162674465 162679133 -
2 domain predictions
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Lj1g3v2738200.1
n.a. Uncharacterized protein TCM_005286 [Theobroma cacao] gi|508704000|gb|EOX95896.1| chr1 31462326 31463337 -
2 domain predictions
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Lj1g3v3444020.1
n.a. Uncharacterized protein TCM_021877 [Theobroma cacao] gi|508715549|gb|EOY07446.1| chr1 39898704 39902355 +
2 domain predictions
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Lj2g3v2124640.1
n.a. Beta-1,3-glucosyltransferase [Medicago truncatula] gi|357481189|ref|XP_003610880.1| chr2 31959807 31967390 +
2 domain predictions
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Lj3g3v1342680.1
n.a. Fringe-related-like protein [Medicago truncatula] gi|357453517|ref|XP_003597036.1| chr3 17417983 17420444 +
2 domain predictions
 –
Lj3g3v1353740.1
n.a. Fringe-related-like protein [Medicago truncatula] gi|357453517|ref|XP_003597036.1| chr3 17438415 17441265 -
2 domain predictions
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Lj3g3v2888620.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508707263|gb|EOX99159.1| chr3 35841429 35851236 -
2 domain predictions
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Lj3g3v3117650.1
n.a. Fringe-like protein [Medicago truncatula] gi|357472519|ref|XP_003606544.1| chr3 38942596 38944339 -
2 domain predictions
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Lj4g3v2976890.1
n.a. Beta-1,3-glucosyltransferase [Theobroma cacao] gi|508777574|gb|EOY24830.1| chr4 39401654 39405758 -
2 domain predictions
 –
Lj4g3v2976900.1
n.a. Beta-1,3-glucosyltransferase [Theobroma cacao] gi|508777574|gb|EOY24830.1| chr4 39401991 39405758 -
2 domain predictions
 –
LotjaGi1g1v0479800.1
n.a. Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TAIR: AT4G11350.1 transferring glycosyl group transferase (DUF604); Swiss-Prot: sp|P79948|LFNG_XENLA Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TrEMBL-Plants: tr|A0A0R0IDE2|A0A0R0IDE2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0479800 LjG1.1_chr1 99189010 99194998 -
2 domain predictions
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LotjaGi1g1v0579000.1
n.a. Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TAIR: AT2G37730.1 glycosyltransferase (DUF604); Swiss-Prot: sp|Q8BHT6|B3GLT_MOUSE Beta-1,3-glucosyltransferase; TrEMBL-Plants: tr|A0A072U016|A0A072U016_MEDTR Transferring glycosyl group transferase; Found in the gene: LotjaGi1g1v0579000 LjG1.1_chr1 111865753 111875168 +
2 domain predictions
 –
LotjaGi2g1v0365800.1
n.a. Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TAIR: AT1G07850.1 transferring glycosyl group transferase (DUF604); Swiss-Prot: sp|Q9JJ06|C1GLT_MOUSE Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1; TrEMBL-Plants: tr|I1MPH9|I1MPH9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0365800 LjG1.1_chr2 86334015 86337010 -
2 domain predictions
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LotjaGi2g1v0435600.1
n.a. Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TAIR: AT4G23490.1 fringe-like protein (DUF604); Swiss-Prot: sp|Q6Y288|B3GLT_HUMAN Beta-1,3-glucosyltransferase; TrEMBL-Plants: tr|G7KC11|G7KC11_MEDTR Transferring glycosyl group transferase; Found in the gene: LotjaGi2g1v0435600 LjG1.1_chr2 93224469 93228646 -
2 domain predictions
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LotjaGi2g1v0435600.2
n.a. transferring glycosyl group transferase (DUF604); TAIR: AT4G23490.1 fringe-like protein (DUF604); Swiss-Prot: sp|Q694C5|ABC3G_ERYPA DNA dC->dU-editing enzyme APOBEC-3G; TrEMBL-Plants: tr|G7KC11|G7KC11_MEDTR Transferring glycosyl group transferase; Found in the gene: LotjaGi2g1v0435600 LjG1.1_chr2 93224855 93225946 -
2 domain predictions
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LotjaGi2g1v0448000.1
n.a. Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TAIR: AT1G33250.1 beta-1,3-n-acetylglucosaminyltransferase radical fringe protein, putative (DUF604); Swiss-Prot: sp|Q8BHT6|B3GLT_MOUSE Beta-1,3-glucosyltransferase; TrEMBL-Plants: tr|I1JAJ0|I1JAJ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0448000 LjG1.1_chr2 94186032 94193709 +
2 domain predictions
 –
LotjaGi2g1v0448000.2
n.a. Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TAIR: AT1G33250.1 beta-1,3-n-acetylglucosaminyltransferase radical fringe protein, putative (DUF604); Swiss-Prot: sp|Q8BHT6|B3GLT_MOUSE Beta-1,3-glucosyltransferase; TrEMBL-Plants: tr|I1JAJ0|I1JAJ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0448000 LjG1.1_chr2 94186097 94193707 +
2 domain predictions
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LotjaGi3g1v0192000.1
n.a. Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TAIR: AT1G05280.1 ERV-F (C)1 provirus ancestral Env polyprotein, putative (DUF604); Swiss-Prot: sp|Q8JHF2|LFNG_DANRE Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TrEMBL-Plants: tr|K7M2U6|K7M2U6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0192000 LjG1.1_chr3 27765979 27769174 -
2 domain predictions
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LotjaGi3g1v0275500.1
n.a. Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TAIR: AT1G07850.1 transferring glycosyl group transferase (DUF604); Swiss-Prot: sp|Q2KJ92|LFNG_BOVIN Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TrEMBL-Plants: tr|G7IU85|G7IU85_MEDTR Transferring glycosyl group transferase; Found in the gene: LotjaGi3g1v0275500 LjG1.1_chr3 54623940 54628519 -
2 domain predictions
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LotjaGi3g1v0275500.2
n.a. Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TAIR: AT1G07850.1 transferring glycosyl group transferase (DUF604); Swiss-Prot: sp|Q2KJ92|LFNG_BOVIN Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TrEMBL-Plants: tr|G7IU85|G7IU85_MEDTR Transferring glycosyl group transferase; Found in the gene: LotjaGi3g1v0275500 LjG1.1_chr3 54623940 54628519 -
2 domain predictions
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LotjaGi3g1v0275500.3
n.a. Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TAIR: AT1G07850.1 transferring glycosyl group transferase (DUF604); Swiss-Prot: sp|Q2KJ92|LFNG_BOVIN Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TrEMBL-Plants: tr|G7IU85|G7IU85_MEDTR Transferring glycosyl group transferase; Found in the gene: LotjaGi3g1v0275500 LjG1.1_chr3 54623940 54628519 -
2 domain predictions
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LotjaGi3g1v0386100.1
n.a. Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TAIR: AT5G41460.1 transferring glycosyl group transferase (DUF604); Swiss-Prot: sp|Q8JHF2|LFNG_DANRE Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TrEMBL-Plants: tr|A0A0B2R507|A0A0B2R507_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0386100 LjG1.1_chr3 78185839 78192487 -
2 domain predictions
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LotjaGi3g1v0463100.1
n.a. transferring glycosyl group transferase (DUF604); TAIR: AT4G15240.1 glycosyltransferase (DUF604); Swiss-Prot: sp|A6LLU8|RUVC_THEM4 Crossover junction endodeoxyribonuclease RuvC; TrEMBL-Plants: tr|A0A151S6C9|A0A151S6C9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0463100 LjG1.1_chr3 87849771 87858431 -
2 domain predictions
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LotjaGi3g1v0463100.2
n.a. Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TAIR: AT1G05280.2 ERV-F (C)1 provirus ancestral Env polyprotein, putative (DUF604); Swiss-Prot: sp|P79948|LFNG_XENLA Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TrEMBL-Plants: tr|A0A0B2QSR2|A0A0B2QSR2_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0463100 LjG1.1_chr3 87849771 87858431 -
2 domain predictions
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LotjaGi4g1v0429400.1
n.a. Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TAIR: AT4G23490.1 fringe-like protein (DUF604); Swiss-Prot: sp|P79948|LFNG_XENLA Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TrEMBL-Plants: tr|I1K6F3|I1K6F3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0429400 LjG1.1_chr4 80355234 80359507 -
2 domain predictions
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LotjaGi6g1v0064100.1
n.a. Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TAIR: AT3G11420.1 beta-1,3-N-acetylglucosaminyltransferase lunatic protein, putative (DUF604); Swiss-Prot: sp|Q8JHF2|LFNG_DANRE Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TrEMBL-Plants: tr|V7D191|V7D191_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0064100 LjG1.1_chr6 11851015 11857471 +
2 domain predictions
 –
LotjaGi6g1v0064100.2
n.a. Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TAIR: AT3G11420.1 beta-1,3-N-acetylglucosaminyltransferase lunatic protein, putative (DUF604); Swiss-Prot: sp|Q8JHF2|LFNG_DANRE Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TrEMBL-Plants: tr|V7D191|V7D191_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0064100 LjG1.1_chr6 11851017 11856488 +
2 domain predictions
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LotjaGi6g1v0064100.3
n.a. Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TAIR: AT3G11420.1 beta-1,3-N-acetylglucosaminyltransferase lunatic protein, putative (DUF604); Swiss-Prot: sp|Q8JHF2|LFNG_DANRE Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TrEMBL-Plants: tr|V7D191|V7D191_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0064100 LjG1.1_chr6 11851147 11856084 +
2 domain predictions
 –