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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0435800 |
| Transcript ID | LotjaGi2g1v0435800.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear transport factor 2 (NTF2) family protein; TAIR: AT5G41470.1 Nuclear transport factor 2 (NTF2) family protein; Swiss-Prot: sp|B5ZAG0|MINC_HELPG Probable septum site-determining protein MinC; TrEMBL-Plants: tr|K7K592|K7K592_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0435800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93242734..93246434) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAGAAATGGATGAATGCATACGGTAATTATCCAAAATATGACAATCCTATGGTAATTTTTTGATAATCAAAGCGTAT TCACTCCAAAAATAAGTACGTGTACAAAACTCATCCTCAAAATTGACAAAGCATATATTCAAAACTGGATAACTGAAAAC TAGCGCTATATATAAATCAAAATACAAGTTACAGAGGATGGAACATGATAAACTAGATGAAGTTGATACAATATACAAAC AACAACATTGATCCTTGTTCTTTGTTCAACCCTGCTACAAGGGAGTACTAGTTTTGTCTTGGAGAATGCAATTGCAAGTC AGATGATGAAGAGGCTCTGGAAATTGCAGACACGATGGAATGAAAAGCATTGGCAGCTATTTTAGACTTTATCTGGCCTC TTTTTGGAAGAGGCTTTTTGTCTTTGAACCTGCGGTGGTTCTTCCTGTTGACAACAACATCAGCGGGTTGAACATGACCA AATATTCTGTTGTTCATTCTCTTGTTCTTATATATGCAAAGCTGAAACAATCTGGTACCTTCTGAATGTATATGTTGTCT GAAATTGGTGGAAGAGAAGGTAAAGGACCAGGAGTTTATATAGAACTCTGAATAAGCTTATCAGAAATTTATATTGGAAG GAGGGTGAAGAATGCAGTTTTGTCTCACTGTTGGAGGTTAGGGAACATGCCAGCTACTCAACAAGATTCGTTTCAGCTCA ACACATGACAAGTAGTTGAGTATAGGTTTGATTGATTTTGAATGACCAGAAAATTGATGATAGGTGTACATAGTTCCAGA GAAATAATATTGTTGTTCAGCGTCTGCAAGTGCCAATGATGAACACGTGCAGGTAAATTAATGGGATCTTGAAGCTGTCT TAATCGTGTCTGGTATATGAAAGGATTTAGTCAATTGTTTTATAATTATTAATATTTCATTTGCTAATTGGGTAGGAATC AGGGAGCAGCGTGTATTTTTTAGTTGAATTATCATCTTTTTCAGTGTAAATTTCAAGGCTAGCTGGCAATATATTAACAA ATATCAGTGTTTGTATCGCAGATATGAAGCACGCCCACCATCACCGTGCATAATCTTCTGACAAACAAATGCACATACAG CAAGCAATAATATTTGCGTTTCCAAATGATCTTGCTTCCTCGCAGTTTCAGTTTGATAAGTTAAATTAACTTTTCTGTCA TGCTTGTCTAGGTGGTGTTTTGATTGTCCTGATTGTATATTTATGTGGAAGATTCAGGACTACCTTCCACACGAAGAAAT AGTCAGATATCATTTTACAGAAGTGGACCTTTTTACATTGTTAAAAATGTATCAATGAGTTAAGGATTACCCCCCATCAT TTTACCTTCTAACCATGCAAGATGTACAGCCAGAAACTTTTGCAGGGGTTTACGCCAGCCACAATTTTCTTGCACCAGCA AAATCAGCCTAATAGTTAATTTAGCAATAGTAATTTCTTGTGATTAATTTTCTTGTGAAATAATGAGTGATAAGGAAGTG TGGTGGGGCACTACCCCTCCCAATAACCCAAAAAAATAAATATAAGGTGGTGAGGTATTATTCTTAGATTTCATGTTAAG GCAGACACAGTAAAGCAAATGGAGAAACTAAACAAACTAGGCACTGATTCTTTGGCTCAATCTAGAGAAAGCTCTTTGTT CTTTCCCTCCAGTAAGTCACATAAGAAAACAATATATTAGTCAGTTGCCTATACTTTTCTATGTTCATTTTTGTCAAGAA AACATACTAATGGATGTTCTAGTTAAATTCCCAATTAGAGCTTCTTCATTTCATTGCCCGGTAATAAACTCTGATATCAC AAAGAAGCTTGCCCTTAGGTTCTCTTCCACTCCCAGCAAAAGAATATGCAACTTGCAAAGCATTGGTTTCAACAGGAATG TCCTAAAAAAACCTTGGGATAGGAAAAGAATTTCAGCCATAGCACCAAACAGAGACCCCAAATCTGAGCAAAATTCATTC TCTCCAGCAGAGATTGTAGATCACTTCTACACATGCATCAATGACAAGGAGCTACGAAAATTGGATGAATGCATATCTCA AGATGCTTGCTTTGATGACTACACGTTCATCAAACCATTCCAAGGAAAGAAGGTTTGCATCTAAATTCTAAACCACACTT AAACTCGAATAAGCCATGGTTAACTACATGACAAAGTCTAAAAATAACATTGCAGGAAGTAATGCATTTCTTGCAGCAGC TTACTGATAGCATGGGCCAAAATGTGAAATTCAGAACAAGAAAAATATTGGAGGGAGATGATTTAACTGTTGCAGCAAAC TGGCACTTGGGTCATATTCCTATCCTAGATTTACTATTTTTTTTCTGCTTGTTATTTACTGCTTCCTAAGCCTAAGGTAC AAATAATACAAGGCTTGATGAATATATTTGTGGTATATTAGAATGGAAAAAGGAACAGATCCCTTTAACCAGAGGCTGCA GTTTCTTCAAGCTATCAAAAGAAGGAGAAATCATGATCATTAGGTACGTAGCAAAACGATCAAATTCTCAAGAGTCATCT ATAGTGTAATACATATACTCACTATAAAATTATATTCAGTAGAGCTGAAGTACTAATCGAATCACCCGTCAAACCTGGAA GCATAGTTTTGGTAACTCCAAAAACACAATCTAACTCTTCTAAGTATTCTGATTCTTATGATAATCTACTTTCTACATCC TAAATATGACAATCCTATGGTAATTTTGTTTCCTCTTGAGAAATCAGACAGTGTTGAAGACCGTGACTTCACTATTTGAT GCCTTTCCAAATGCAGCTGAATGTGAGTCAATTTTCCTACATAACTAAATTTCTCATTTCATTTCATTCATATCGCAACA CATCGACTAATACATACATATTTATGCTCTGTTGATGCAGGGTTCCTAAGAAAGCCTCATGCAATACTAACATGGATACT AAAAATTTACAGCATATTTATAGAGCCTATGGTTAAACCACTACTAGATGGGTACATAAAACTATGGGGTTTCACGGTTC GATTGCTTATCGATGCATTCAAGCTTTTGGCATTTATTTCTAAGATCCTATTCAAGTAGAGAGTATGTATGATCTCACAT CACATTAGCTGGCATCAACCATCATCATCAGAACCGCTGTTCCACCATGTCTCCAACAATGAAAGGGCAAGCAATGGTCC TATAACCGGTGGAAGCGGTGGCGGCCGGCTAAAGGAAACTATTGGATCATTGTTGTCTTGTTTCTTAGGTTTTGAAGTCA CCAATATACCTGTTTCAATTTCAATAATAACAAATTTGATTTCATAAGTTAATCTCTTATATTTGCAAAAAAATCATCTA ATCAATCATCAAGTAAGAACTGAAAACCCTAGAAATGAAAAGTGAAAATCTAACATCTATCAATAGAGGAATTTGAATAA TACCCTGTGATCCTTTCATCGGGTACGTATGCTTGAATCTGTGTTTTGCAATTGCGACAAGTTGTCTACTCATGAAGACG AAGGTGGAATTGCGAGGAACACGAAGGTGGAATCGGAAGGAAGAATCTGGAAGATGGAATTCGCAGTCTGAGTCGGTGTC AGTCTGAAGGGGAAGCGCGGAAATGGGAAATTGAGAGTTCCCGAAGTTTCGCAAACTGTTGGATTTATAAAGACACGTGT ACGACAGATGGCGAAACCCTA
CDS sequence (LotjaGi2g1v0435800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGTTCTAGTTAAATTCCCAATTAGAGCTTCTTCATTTCATTGCCCGGTAATAAACTCTGATATCACAAAGAAGCT TGCCCTTAGGTTCTCTTCCACTCCCAGCAAAAGAATATGCAACTTGCAAAGCATTGGTTTCAACAGGAATGTCCTAAAAA AACCTTGGGATAGGAAAAGAATTTCAGCCATAGCACCAAACAGAGACCCCAAATCTGAGCAAAATTCATTCTCTCCAGCA GAGATTGTAGATCACTTCTACACATGCATCAATGACAAGGAGCTACGAAAATTGGATGAATGCATATCTCAAGATGCTTG CTTTGATGACTACACGTTCATCAAACCATTCCAAGGAAAGAAGGAAGTAATGCATTTCTTGCAGCAGCTTACTGATAGCA TGGGCCAAAATGTGAAATTCAGAACAAGAAAAATATTGGAGGGAGATGATTTAACTGTTGCAGCAAACTGGCACTTGGAA TGGAAAAAGGAACAGATCCCTTTAACCAGAGGCTGCAGTTTCTTCAAGCTATCAAAAGAAGGAGAAATCATGATCATTAG AGCTGAAGTACTAATCGAATCACCCGTCAAACCTGGAAGCATAGTTTTGACAGTGTTGAAGACCGTGACTTCACTATTTG ATGCCTTTCCAAATGCAGCTGAATGGTTCCTAAGAAAGCCTCATGCAATACTAACATGGATACTAAAAATTTACAGCATA TTTATAGAGCCTATGGTTAAACCACTACTAGATGGGTACATAAAACTATGGGGTTTCACGGTTCGATTGCTTATCGATGC ATTCAAGCTTTTGGCATTTATTTCTAAGATCCTATTCAAGTAG
Protein sequence (LotjaGi2g1v0435800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVLVKFPIRASSFHCPVINSDITKKLALRFSSTPSKRICNLQSIGFNRNVLKKPWDRKRISAIAPNRDPKSEQNSFSPA EIVDHFYTCINDKELRKLDECISQDACFDDYTFIKPFQGKKEVMHFLQQLTDSMGQNVKFRTRKILEGDDLTVAANWHLE WKKEQIPLTRGCSFFKLSKEGEIMIIRAEVLIESPVKPGSIVLTVLKTVTSLFDAFPNAAEWFLRKPHAILTWILKIYSI FIEPMVKPLLDGYIKLWGFTVRLLIDAFKLLAFISKILFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 229 | 229 | - | – | |
| PANTHER | 19 | 274 | 256 | 2.5E-95 | – | |
| PANTHER | 19 | 274 | 256 | 2.5E-95 | – | |
| Gene3D | 73 | 196 | 124 | 4.5E-15 | – | |
| SUPERFAMILY | 78 | 187 | 110 | 4.81E-13 | ||
| Pfam | 83 | 183 | 101 | 4.9E-7 | ||
| Phobius | 230 | 250 | 21 | - | – | |
| Phobius | 251 | 255 | 5 | - | – | |
| Phobius | 256 | 279 | 24 | - | – | |
| Phobius | 280 | 280 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0435800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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